Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015062.1 Kokia drynarioides strain JFW-HI SEQ_130106, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4046
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33


Found at i:186 original size:21 final size:21

Alignment explanation


    Indices: 162--203  Score: 50
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        152 AGTAAATTAC

                                  
        162 TAAA-AAAATTAATACATAAAA
          1 TAAATAAAA-TAATACATAAAA

                  *       *      
        183 TAAATACAATAATAGATAAAA
          1 TAAATAAAATAATACATAAAA

        204 CGAGATGCGA


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  21   15  0.83
  22    3  0.17

ACGTcount: A:0.69, C:0.05, G:0.02, T:0.24


Consensus pattern (21 bp):   
TAAATAAAATAATACATAAAA
Done.