Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015064.1 Kokia drynarioides strain JFW-HI SEQ_130108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115403
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Warning! 31 characters in sequence are not A, C, G, or T
Found at i:9487 original size:43 final size:42
Alignment explanation
Indices: 9435--9524 Score: 171
Period size: 43 Copynumber: 2.1 Consensus size: 42
9425 TCAAATAAGG
9435 TTATTCAAAGTTGTTATTTTCTTAATTTTATTTTGACTAAAT
1 TTATTCAAAGTTGTTATTTTCTTAATTTTATTTTGACTAAAT
9477 TATATTCAAAGTTGTTATTTTCTTAATTTTATTTTGACTAAAT
1 T-TATTCAAAGTTGTTATTTTCTTAATTTTATTTTGACTAAAT
9520 TTATT
1 TTATT
9525 TATTTTAAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 5 0.11
43 42 0.89
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.58
Consensus pattern (42 bp):
TTATTCAAAGTTGTTATTTTCTTAATTTTATTTTGACTAAAT
Found at i:13754 original size:16 final size:15
Alignment explanation
Indices: 13733--13762 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
13723 TTATTATATA
13733 GAAAAGAAAGAATAAC
1 GAAAAGAAA-AATAAC
13749 GAAAAGAAAAATAA
1 GAAAAGAAAAATAA
13763 ATAAGAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.73, C:0.03, G:0.17, T:0.07
Consensus pattern (15 bp):
GAAAAGAAAAATAAC
Found at i:17664 original size:30 final size:28
Alignment explanation
Indices: 17625--17692 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
17615 AGGAATTTTG
* *
17625 GGGTCAAAATTAAAATTTTTAGAAAATTT
1 GGGTTAAAATT-AAACTTTTAGAAAATTT
* *
17654 GGGATTAAAATTGAACTTTTGGAAAATTT
1 GGG-TTAAAATTAAACTTTTAGAAAATTT
17683 GAGGTTAAAA
1 G-GGTTAAAA
17693 ATATGATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 24 0.73
30 9 0.27
ACGTcount: A:0.43, C:0.03, G:0.19, T:0.35
Consensus pattern (28 bp):
GGGTTAAAATTAAACTTTTAGAAAATTT
Found at i:17694 original size:30 final size:28
Alignment explanation
Indices: 17641--17795 Score: 99
Period size: 29 Copynumber: 5.4 Consensus size: 28
17631 AAATTAAAAT
*
17641 TTTTAGAAAATTTG-GGATTAAAATTGAA
1 TTTTGGAAAATTTGAGG-TTAAAATTGAA
*
17669 CTTTTGGAAAATTTGAGGTTAAAAATATGAT
1 -TTTTGGAAAATTTGAGGTT-AAAAT-TGAA
17700 TTTTGG-AAATTTGGAGG-TAAAA-TGTAA
1 TTTTGGAAAATTT-GAGGTTAAAATTG-AA
* *
17727 TTTTGGAAAGTTCGAGAGTTAAAATGTG-A
1 TTTTGGAAAATTTGAG-GTTAAAAT-TGAA
* *
17756 TTTT-AAAGAAGTTTGGGGGTTAAAA-TGTAA
1 TTTTGGAA-AA-TTT-GAGGTTAAAATTG-AA
17786 TTTTGGAAAA
1 TTTTGGAAAA
17796 GTTCAAGGGT
Statistics
Matches: 100, Mismatches: 10, Indels: 31
0.71 0.07 0.22
Matches are distributed among these distances:
26 2 0.02
27 10 0.10
28 13 0.13
29 33 0.33
30 33 0.33
31 9 0.09
ACGTcount: A:0.38, C:0.01, G:0.23, T:0.37
Consensus pattern (28 bp):
TTTTGGAAAATTTGAGGTTAAAATTGAA
Found at i:17798 original size:30 final size:30
Alignment explanation
Indices: 17641--17871 Score: 151
Period size: 30 Copynumber: 7.9 Consensus size: 30
17631 AAATTAAAAT
* *
17641 TTTTAGAAAA-TTT-GGGATTAAAAT-TGAA
1 TTTTGGAAAAGTTTGGGGGTTAAAATGT-AA
* * *
17669 CTTTTGGAAAA-TTT-GAGGTTAAAAATATGAT
1 -TTTTGGAAAAGTTTGGGGGTT-AAAATGT-AA
*
17700 TTTTGG-AAA-TTTGGAGG-TAAAATGTAA
1 TTTTGGAAAAGTTTGGGGGTTAAAATGTAA
* * * *
17727 TTTTGG-AAAGTTCGAGAGTTAAAATGTGA
1 TTTTGGAAAAGTTTGGGGGTTAAAATGTAA
*
17756 TTTT-AAAGAAGTTTGGGGGTTAAAATGTAA
1 TTTTGGAA-AAGTTTGGGGGTTAAAATGTAA
*** * *
17786 TTTTGGAAAAGTTCAAGGGTTACAATGTGA
1 TTTTGGAAAAGTTTGGGGGTTAAAATGTAA
* *
17816 TTTTAGAGAAGTTTGGGGGTTAAAATGTAA
1 TTTTGGAAAAGTTTGGGGGTTAAAATGTAA
* * *
17846 TTTTAGAAAAATTT-AGGGTTAAAATG
1 TTTTGGAAAAGTTTGGGGGTTAAAATG
17872 AGATTGTTAA
Statistics
Matches: 162, Mismatches: 32, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
27 10 0.06
28 10 0.06
29 48 0.30
30 89 0.55
31 5 0.03
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (30 bp):
TTTTGGAAAAGTTTGGGGGTTAAAATGTAA
Found at i:17820 original size:60 final size:60
Alignment explanation
Indices: 17709--17885 Score: 243
Period size: 60 Copynumber: 3.0 Consensus size: 60
17699 TTTTTGGAAA
* * *
17709 TTTGGAGG-TAAAATGTAATTTTGG-AAAGTTCGAGAGTTAAAATGTGATTTTAAAGAAG
1 TTTGGGGGTTAAAATGTAATTTTGGAAAAGTTCAAGGGTTAAAATGTGATTTTAAAGAAG
* *
17767 TTTGGGGGTTAAAATGTAATTTTGGAAAAGTTCAAGGGTTACAATGTGATTTTAGAGAAG
1 TTTGGGGGTTAAAATGTAATTTTGGAAAAGTTCAAGGGTTAAAATGTGATTTTAAAGAAG
* * * *
17827 TTTGGGGGTTAAAATGTAATTTTAGAAAAATT-TAGGGTTAAAATGAGATTGTTAAAGAA
1 TTTGGGGGTTAAAATGTAATTTTGGAAAAGTTCAAGGGTTAAAATGTGATT-TTAAAGAA
17886 AATAGGATTT
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
58 7 0.07
59 31 0.30
60 67 0.64
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.35
Consensus pattern (60 bp):
TTTGGGGGTTAAAATGTAATTTTGGAAAAGTTCAAGGGTTAAAATGTGATTTTAAAGAAG
Found at i:18832 original size:19 final size:20
Alignment explanation
Indices: 18793--18835 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
18783 GATTTTATTG
*
18793 TTCTTTTAAAATTGTTTTTT
1 TTCTTTTAAAACTGTTTTTT
18813 TTCTTTTAAAACTGTTTTTT
1 TTCTTTTAAAACTGTTTTTT
18833 TTC
1 TTC
18836 AGATTTGTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.09, G:0.05, T:0.67
Consensus pattern (20 bp):
TTCTTTTAAAACTGTTTTTT
Found at i:19183 original size:27 final size:27
Alignment explanation
Indices: 19153--19210 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
19143 TTTGACTTCA
* *
19153 AATG-CTATCTGTTTGTATTGGTTTTTG
1 AATGCCTATCTCTTTGTATT-GATTTTG
* *
19180 AATGCCTGTTTCTTTGTATTGATTTTG
1 AATGCCTATCTCTTTGTATTGATTTTG
19207 AATG
1 AATG
19211 TTCAACAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 14 0.54
28 12 0.46
ACGTcount: A:0.17, C:0.09, G:0.21, T:0.53
Consensus pattern (27 bp):
AATGCCTATCTCTTTGTATTGATTTTG
Found at i:19530 original size:21 final size:20
Alignment explanation
Indices: 19499--19542 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
19489 TGTTTTAAAA
*
19499 TTTGGATTTTGGATTTGGAC
1 TTTGGATTTTGGATTTAGAC
*
19519 TTTGGAATTTTGTATTTAGAC
1 TTTGG-ATTTTGGATTTAGAC
19540 TTT
1 TTT
19543 TAAAATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.18, C:0.05, G:0.23, T:0.55
Consensus pattern (20 bp):
TTTGGATTTTGGATTTAGAC
Found at i:19716 original size:21 final size:21
Alignment explanation
Indices: 19683--19732 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
19673 ATAATTGTAT
*
19683 AATCCAAATATAAAGTTTAGA
1 AATCCAAACATAAAGTTTAGA
* *
19704 AATCTAAACATAAAGTTTATA
1 AATCCAAACATAAAGTTTAGA
19725 AATCCAAA
1 AATCCAAA
19733 TTACATAATC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.54, C:0.12, G:0.06, T:0.28
Consensus pattern (21 bp):
AATCCAAACATAAAGTTTAGA
Found at i:33827 original size:2 final size:2
Alignment explanation
Indices: 33822--33866 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
33812 TTTTTTCTTA
*
33822 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33864 AT A
1 AT A
33867 ATTTAAATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:35781 original size:11 final size:12
Alignment explanation
Indices: 35745--35793 Score: 57
Period size: 11 Copynumber: 4.1 Consensus size: 12
35735 AGATATGATG
35745 TATTATTTAAAA
1 TATTATTTAAAA
35757 TATTATTTCAAAAA
1 TATTATTT--AAAA
35771 TATT-TTTAAAA
1 TATTATTTAAAA
*
35782 CATT-TTTAAAA
1 TATTATTTAAAA
35793 T
1 T
35794 TACAATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
11 14 0.42
12 8 0.24
13 3 0.09
14 8 0.24
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (12 bp):
TATTATTTAAAA
Found at i:35809 original size:25 final size:25
Alignment explanation
Indices: 35778--35829 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
35768 AAATATTTTT
*
35778 AAAACATTTTTAAAATT-ACAATTTA
1 AAAACATTTTAAAAATTGA-AATTTA
35803 AAAACATTTTAAAAATTGAAATTTA
1 AAAACATTTTAAAAATTGAAATTTA
35828 AA
1 AA
35830 TATTTTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (25 bp):
AAAACATTTTAAAAATTGAAATTTA
Found at i:35815 original size:11 final size:11
Alignment explanation
Indices: 35761--35817 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
35751 TTAAAATATT
* *
35761 ATTTCAAAAAT
1 ATTTTAAAAAC
*
35772 ATTTTTAAAAC
1 ATTTTAAAAAC
35783 ATTTTTAAAATTAC
1 A-TTTTAAAA--AC
*
35797 AATTTAAAAAC
1 ATTTTAAAAAC
35808 ATTTTAAAAA
1 ATTTTAAAAA
35818 TTGAAATTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
11 20 0.54
12 7 0.19
13 7 0.19
14 3 0.08
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (11 bp):
ATTTTAAAAAC
Found at i:37170 original size:22 final size:21
Alignment explanation
Indices: 37142--37213 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 21
37132 ATTTATATTG
37142 TTGTTTTTGTACTGTTTTTTTA
1 TTGTTTTTGTA-TGTTTTTTTA
* *
37164 TTGTTTTGGT-TGTTGTTTTTTG
1 TTGTTTTTGTATG-T-TTTTTTA
* *
37186 TTATTTTTGTATTTTTTTTTA
1 TTGTTTTTGTATGTTTTTTTA
*
37207 CTGTTTT
1 TTGTTTT
37214 GATCGTTATT
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
20 2 0.05
21 12 0.31
22 24 0.62
23 1 0.03
ACGTcount: A:0.07, C:0.03, G:0.15, T:0.75
Consensus pattern (21 bp):
TTGTTTTTGTATGTTTTTTTA
Found at i:37237 original size:12 final size:12
Alignment explanation
Indices: 37228--37293 Score: 64
Period size: 12 Copynumber: 5.7 Consensus size: 12
37218 GTTATTTTCG
37228 TGTTGTTTTTGC
1 TGTTGTTTTTGC
* *
37240 TGTTATTTTTGT
1 TGTTGTTTTTGC
*
37252 TGTTGTTTTTGT
1 TGTTGTTTTTGC
* *
37264 TGCTATTTTT--
1 TGTTGTTTTTGC
*
37274 TGTTGTTTTTGA
1 TGTTGTTTTTGC
37286 TGTTGTTT
1 TGTTGTTT
37294 ACTGTTATTT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
10 8 0.18
12 37 0.82
ACGTcount: A:0.05, C:0.03, G:0.21, T:0.71
Consensus pattern (12 bp):
TGTTGTTTTTGC
Found at i:37237 original size:24 final size:22
Alignment explanation
Indices: 37210--37289 Score: 88
Period size: 24 Copynumber: 3.5 Consensus size: 22
37200 TTTTTTACTG
37210 TTTTGATCGTTATTTTCGTGTTGT
1 TTTTGAT-GTTATTTT-GTGTTGT
*
37234 TTTTGCTGTTATTTTTGTTGTTGT
1 TTTTGATGTTA-TTTTG-TGTTGT
* * *
37258 TTTTGTTGCTATTTTTTGTTGT
1 TTTTGATGTTATTTTGTGTTGT
37280 TTTTGATGTT
1 TTTTGATGTT
37290 GTTTACTGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
22 14 0.29
23 9 0.19
24 25 0.52
ACGTcount: A:0.06, C:0.05, G:0.20, T:0.69
Consensus pattern (22 bp):
TTTTGATGTTATTTTGTGTTGT
Found at i:37237 original size:44 final size:44
Alignment explanation
Indices: 37140--37238 Score: 119
Period size: 43 Copynumber: 2.2 Consensus size: 44
37130 AAATTTATAT
* * * * *
37140 TGTTGTTTTTGTACTGTTTTTTTATTGTTTTGGTTGTTGTTTTT
1 TGTTGTTTTTGTACTGTTTTTTTACTGTTTTGATCGTTATTTTG
* *
37184 TGTTATTTTTGTA-TTTTTTTTTACTGTTTTGATCGTTATTTTCG
1 TGTTGTTTTTGTACTGTTTTTTTACTGTTTTGATCGTTATTTT-G
37228 TGTTGTTTTTG
1 TGTTGTTTTTG
37239 CTGTTATTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 24 0.52
44 22 0.48
ACGTcount: A:0.07, C:0.04, G:0.18, T:0.71
Consensus pattern (44 bp):
TGTTGTTTTTGTACTGTTTTTTTACTGTTTTGATCGTTATTTTG
Found at i:37492 original size:26 final size:26
Alignment explanation
Indices: 37463--37539 Score: 75
Period size: 26 Copynumber: 2.8 Consensus size: 26
37453 TATAAAAAAA
37463 ATTTTTAATGTATTTTAAATTTATTT-
1 ATTTTTAATGT-TTTTAAATTTATTTG
* *
37489 ATTTTTTAATGTTTTTAAGTGTATTTG
1 A-TTTTTAATGTTTTTAAATTTATTTG
*
37516 ATTTATTATATATTTTTTAAATTT
1 ATTT-TTA-AT-GTTTTTAAATTT
37540 GTTGTATGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
26 16 0.39
27 14 0.34
28 2 0.05
29 9 0.22
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (26 bp):
ATTTTTAATGTTTTTAAATTTATTTG
Found at i:37498 original size:27 final size:27
Alignment explanation
Indices: 37464--37539 Score: 84
Period size: 27 Copynumber: 2.7 Consensus size: 27
37454 ATAAAAAAAA
37464 TTTTTAATGTATTTTAAATTTATTT-AT
1 TTTTTAATGT-TTTTAAATTTATTTGAT
* *
37491 TTTTTAATGTTTTTAAGTGTATTTGAT
1 TTTTTAATGTTTTTAAATTTATTTGAT
37518 TTATTATATAT-TTTTTAAATTT
1 TT-TT-TA-ATGTTTTTAAATTT
37540 GTTGTATGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
26 12 0.29
27 14 0.34
28 2 0.05
29 11 0.27
30 2 0.05
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (27 bp):
TTTTTAATGTTTTTAAATTTATTTGAT
Found at i:52457 original size:30 final size:31
Alignment explanation
Indices: 52421--52492 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 31
52411 TTTACAAAAA
*
52421 AAAAAAATTGAAGAA-TTTAATTGA-AATTTT-
1 AAAAAAATTGAA-AAGTTTAA-TAATAATTTTC
*
52451 AAAAAAATTCAAAAGTTTAATAATAATTTTC
1 AAAAAAATTGAAAAGTTTAATAATAATTTTC
52482 AAAAAAATTGA
1 AAAAAAATTGA
52493 GAGGCCTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 4 0.11
30 22 0.61
31 10 0.28
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (31 bp):
AAAAAAATTGAAAAGTTTAATAATAATTTTC
Found at i:54884 original size:18 final size:19
Alignment explanation
Indices: 54845--54905 Score: 72
Period size: 20 Copynumber: 3.2 Consensus size: 19
54835 AGCAAACAAA
*
54845 TAAATAAATTATGAAATAAT
1 TAAATATATTAT-AAATAAT
54865 TAAA-AT-TTATAAATATAT
1 TAAATATATTATAAATA-AT
*
54883 TAAATATATTATAAATAAC
1 TAAATATATTATAAATAAT
54902 TAAA
1 TAAA
54906 AAAAAAAACT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
17 5 0.14
18 10 0.28
19 8 0.22
20 13 0.36
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
TAAATATATTATAAATAAT
Found at i:58458 original size:13 final size:14
Alignment explanation
Indices: 58434--58462 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
58424 GTCATGATTA
58434 TTTTTCTCTCTTCT
1 TTTTTCTCTCTTCT
58448 TTTTTCT-TCTTCT
1 TTTTTCTCTCTTCT
58461 TT
1 TT
58463 GTTTTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTTCTCTCTTCT
Found at i:71965 original size:66 final size:66
Alignment explanation
Indices: 71883--72026 Score: 243
Period size: 66 Copynumber: 2.2 Consensus size: 66
71873 GAGTTCTATT
* *
71883 AGGTGGAGGCGGTGGAGGTGGAGGCGGAGGTGTCACTAGACTTTTATTGCTTTGAATCAGTAACG
1 AGGTGGTGGAGGTGGAGGTGGAGGCGGAGGTGTCACTAGACTTTTATTGCTTTGAATCAGTAACG
71948 G
66 G
* * *
71949 AGGTGGTGGAGGTGGAGGTGGAGGCTGAGGTGTCACTAGACTTTTATTGCTTTGAATCGGTAATG
1 AGGTGGTGGAGGTGGAGGTGGAGGCGGAGGTGTCACTAGACTTTTATTGCTTTGAATCAGTAACG
72014 G
66 G
72015 AGGTGGTGGAGG
1 AGGTGGTGGAGG
72027 CACAAATTTT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 73 1.00
ACGTcount: A:0.20, C:0.10, G:0.43, T:0.27
Consensus pattern (66 bp):
AGGTGGTGGAGGTGGAGGTGGAGGCGGAGGTGTCACTAGACTTTTATTGCTTTGAATCAGTAACG
G
Done.