genome.fa.s15068.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015068.1 Kokia drynarioides strain JFW-HI SEQ_130112, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  452914

Tables:   1   2   

This is table  2  of  2  ( 220 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243421--243459	17	2.3	17	86	0	51	17	12	23	46	1.83
250736--250795	29	2.1	29	96	0	111	38	36	3	21	1.70
253619--253645	2	13.5	2	100	0	54	51	0	48	0	1.00
260926--260991	24	2.8	24	75	9	64	33	12	21	33	1.90
262650--262713	31	2.0	32	85	8	87	57	0	1	40	1.08
262773--262804	16	2.0	16	93	0	55	59	0	0	40	0.97
274350--274414	31	2.1	31	88	5	96	50	4	7	36	1.52
274740--274774	18	1.9	18	94	0	61	54	11	14	20	1.70
275398--275574	87	2.0	87	100	0	354	31	5	23	38	1.78
278209--278243	18	1.9	18	94	0	61	40	17	17	25	1.90
279906--279934	14	2.0	15	93	6	51	34	3	6	55	1.44
282969--283000	17	1.9	17	93	6	57	46	3	0	50	1.17
283441--283509	30	2.3	29	80	7	75	44	14	8	31	1.75
285522--285546	7	3.6	7	100	0	50	84	0	0	16	0.63
288061--288188	63	2.1	60	85	5	168	24	17	7	50	1.71
288362--288533	31	5.8	29	69	18	97	53	12	9	25	1.67
288362--288533	88	1.9	88	81	5	204	53	12	9	25	1.67
289207--289268	26	2.3	27	81	8	65	24	14	1	59	1.44
291524--291597	24	3.1	24	78	0	94	22	17	22	36	1.95
293727--293785	22	2.7	22	97	0	109	67	16	11	3	1.34
294738--294816	30	2.7	29	82	4	86	30	26	3	39	1.74
294738--294821	29	2.9	29	77	8	73	30	28	3	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295020--295079	29	2.1	29	87	3	86	23	11	6	58	1.57
298972--299025	24	2.2	24	87	6	74	25	22	24	27	2.00
298972--299041	24	2.9	24	82	4	70	28	21	21	28	1.99
299032--299168	27	5.0	27	91	0	184	36	20	15	27	1.93
301664--301701	20	2.0	20	85	15	53	34	7	15	42	1.76
304978--305018	18	2.3	18	84	12	50	51	0	41	7	1.30
309900--310467	38	14.9	38	71	11	250	30	23	19	26	1.98
310026--310468	38	11.4	39	72	11	286	30	23	19	26	1.98
310016--310446	78	5.5	80	78	8	213	30	25	18	25	1.98
310061--310276	118	1.8	118	88	5	330	28	23	22	25	1.99
310062--310309	118	2.1	118	83	11	307	29	24	20	25	1.99
312232--312312	42	1.9	42	100	0	162	37	19	2	40	1.65
314865--314949	31	2.8	31	80	5	84	28	25	7	38	1.82
314859--314959	30	3.3	31	77	8	100	29	27	6	35	1.83
316066--316164	31	3.3	28	70	17	83	36	30	7	26	1.83
316724--316800	37	2.1	37	100	0	154	49	15	5	29	1.66
318525--318705	89	2.0	89	97	0	344	35	21	12	30	1.90
323246--323311	25	2.6	25	82	0	87	30	22	24	22	1.99
328386--328410	13	1.9	13	100	0	50	44	8	24	24	1.80
328565--328898	158	2.1	158	85	5	460	22	24	24	28	1.99
333484--333516	16	2.0	17	88	5	50	69	3	3	24	1.16
340288--340319	15	2.1	15	100	0	64	18	31	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341305--341350	7	6.7	7	76	14	51	23	0	0	76	0.79
341296--341357	27	2.3	27	83	2	63	22	0	1	75	0.88
341312--341357	12	3.7	12	86	11	65	23	0	0	76	0.79
341305--341366	27	2.3	26	83	8	79	27	0	0	72	0.85
356351--356390	15	2.6	16	84	8	55	35	12	2	50	1.54
357487--357675	42	4.5	42	89	2	236	26	25	11	37	1.89
360128--360168	18	2.5	16	82	17	57	29	0	4	65	1.13
360265--360300	18	1.9	18	88	5	54	69	0	0	30	0.89
360245--360321	28	2.8	26	80	11	73	66	1	0	32	1.00
360494--360546	26	2.0	26	100	0	106	35	11	18	33	1.87
360778--360836	27	2.2	27	84	6	75	52	11	8	27	1.66
361089--361132	20	2.2	20	88	8	63	2	56	0	40	1.11
374668--374719	19	2.7	19	78	3	59	38	1	1	57	1.21
377279--377321	17	2.6	17	82	17	56	44	2	0	53	1.13
383933--383961	3	9.7	3	100	0	58	31	0	0	68	0.89
397779--398038	29	8.9	29	85	6	296	36	26	3	34	1.72
402002--402032	15	2.0	16	93	6	55	77	0	19	3	0.90
402876--402973	11	8.9	11	72	16	78	79	0	19	1	0.79
402882--402973	10	9.5	10	74	15	86	79	0	19	1	0.80
402882--402973	18	5.3	18	72	17	79	79	0	19	1	0.80
402876--402978	7	14.9	7	73	15	72	79	0	19	0	0.79
402876--402966	41	2.3	38	80	14	103	80	0	18	1	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402883--402978	17	5.6	17	72	17	74	79	0	19	1	0.80
403987--404293	146	2.1	148	83	2	377	33	15	30	19	1.94
403924--404698	49	16.0	50	69	9	290	33	16	30	20	1.94
404162--404524	99	3.7	100	76	6	267	34	16	29	19	1.94
403921--404488	246	2.3	245	83	1	681	33	15	30	20	1.94
404345--404687	185	1.8	186	83	3	458	33	17	30	18	1.94
405041--405208	39	4.3	39	71	3	115	26	30	15	27	1.96
404964--405206	117	2.1	116	82	3	292	27	30	14	26	1.95
405080--405237	78	2.0	78	81	4	185	27	29	17	25	1.97
405150--405324	92	1.9	92	84	6	239	26	33	17	23	1.96
405294--405445	39	3.9	39	80	1	153	25	25	21	27	1.99
405289--405459	78	2.2	78	81	2	200	24	26	19	28	1.99
405289--405460	39	4.4	39	77	5	136	24	26	19	29	1.99
405235--405452	117	1.9	116	81	5	260	25	27	19	27	1.99
405350--405530	39	4.6	39	70	5	123	23	26	20	29	1.99
406097--406161	29	2.2	30	76	20	75	44	33	1	20	1.61
406578--406613	18	2.0	18	100	0	72	44	16	5	33	1.71
407380--407539	29	5.8	30	77	18	168	37	25	1	35	1.67
407385--407539	57	2.9	50	85	7	175	37	25	1	35	1.67
407414--407458	21	2.1	21	91	0	72	37	24	0	37	1.56
417532--417574	21	2.0	23	86	9	63	44	2	0	53	1.13
418381--418446	28	2.3	29	81	5	80	43	0	53	3	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418495--418566	11	5.9	11	73	20	54	50	4	0	45	1.21
418472--418558	29	3.2	28	75	21	105	48	2	0	49	1.13
419041--419083	3	14.3	3	100	0	86	32	0	0	67	0.91
427900--427937	19	2.0	20	84	5	51	60	2	0	36	1.11
430305--430352	20	2.4	20	96	0	87	45	10	10	33	1.72
436120--436161	22	1.9	22	85	9	59	35	26	0	38	1.57
437438--437503	27	2.4	28	82	2	80	36	19	19	24	1.95
437421--437511	13	6.9	13	67	9	51	38	19	19	21	1.94
437427--437504	41	1.9	41	83	0	102	38	19	19	23	1.93
437545--437579	16	2.2	16	90	5	54	8	5	34	51	1.56
437966--438003	17	2.2	17	95	0	67	26	15	39	18	1.91
441946--441971	3	8.7	3	100	0	52	69	0	0	30	0.89

Tables:   1   2

The End!