Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015079.1 Kokia drynarioides strain JFW-HI SEQ_130123, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 413849
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
Warning! 252 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:237 original size:16 final size:16
Alignment explanation
Indices: 216--269 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
206 TGAATTATTG
**
216 ATTACAGCCCTATTCC
1 ATTACAGCTTTATTCC
232 ATTACAGCTTTATTCC
1 ATTACAGCTTTATTCC
* *
248 ATTGCAACTTTATTCC
1 ATTACAGCTTTATTCC
264 ATTACA
1 ATTACA
270 ACGAACCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.28, C:0.28, G:0.06, T:0.39
Consensus pattern (16 bp):
ATTACAGCTTTATTCC
Found at i:271 original size:16 final size:16
Alignment explanation
Indices: 226--271 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
216 ATTACAGCCC
*
226 TATTCCATTACAGCTT
1 TATTCCATTACAACTT
*
242 TATTCCATTGCAACTT
1 TATTCCATTACAACTT
258 TATTCCATTACAAC
1 TATTCCATTACAAC
272 GAACCAAACG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.28, C:0.26, G:0.04, T:0.41
Consensus pattern (16 bp):
TATTCCATTACAACTT
Found at i:3467 original size:20 final size:19
Alignment explanation
Indices: 3429--3469 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
3419 TTGTAATTAT
* *
3429 TATATTTTAATATTTAAAA
1 TATAGTTTAATATTCAAAA
3448 TATAGTTTATATATTCAAAA
1 TATAGTTTA-ATATTCAAAA
3468 TA
1 TA
3470 GGTTTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (19 bp):
TATAGTTTAATATTCAAAA
Found at i:3478 original size:18 final size:19
Alignment explanation
Indices: 3429--3478 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
3419 TTGTAATTAT
*
3429 TATA-TTTTAATATTTAAAA
1 TATAGTTTT-ATATTCAAAA
3448 TATAGTTTATATATTCAAAA
1 TATAGTTT-TATATTCAAAA
*
3468 TA-GGTTTTATA
1 TATAGTTTTATA
3479 AATAATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 4 0.15
19 8 0.30
20 14 0.52
21 1 0.04
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (19 bp):
TATAGTTTTATATTCAAAA
Found at i:4174 original size:49 final size:49
Alignment explanation
Indices: 4121--4224 Score: 199
Period size: 49 Copynumber: 2.1 Consensus size: 49
4111 TAAATTTTAA
4121 AATTTCTTTACAAATTTTTACAAAATTTATTAAATTCCTATAGTTTGTT
1 AATTTCTTTACAAATTTTTACAAAATTTATTAAATTCCTATAGTTTGTT
4170 AATTTCTTTACAAATTTTTACAAAATTTATTAAATTCCTATAGTTTGTT
1 AATTTCTTTACAAATTTTTACAAAATTTATTAAATTCCTATAGTTTGTT
4219 ATATTT
1 A-ATTT
4225 TATAGGGTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 50 0.93
50 4 0.07
ACGTcount: A:0.35, C:0.10, G:0.04, T:0.52
Consensus pattern (49 bp):
AATTTCTTTACAAATTTTTACAAAATTTATTAAATTCCTATAGTTTGTT
Found at i:4266 original size:21 final size:22
Alignment explanation
Indices: 4234--4281 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
4224 TTATAGGGTT
*
4234 TATTTATTTTATATAAT-TTTTA
1 TATTTATTTTATA-AATCTTATA
4256 TATTT-TTTTATAAATCTTATA
1 TATTTATTTTATAAATCTTATA
4277 TATTT
1 TATTT
4282 GAATTTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 3 0.12
21 16 0.67
22 5 0.21
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TATTTATTTTATAAATCTTATA
Found at i:4275 original size:19 final size:22
Alignment explanation
Indices: 4234--4277 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 22
4224 TTATAGGGTT
*
4234 TATTTATTTTATATAATTTTTA
1 TATTTATTTTATATAATTCTTA
4256 TATTT-TTTTATA-AA-TCTTA
1 TATTTATTTTATATAATTCTTA
4275 TAT
1 TAT
4278 ATTTGAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 2 0.10
21 7 0.33
22 5 0.24
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTTATTTTATATAATTCTTA
Found at i:7420 original size:21 final size:21
Alignment explanation
Indices: 7396--7446 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7386 TTGAACACAG
* *
7396 AATTTCGAATTCTAAACCTTA
1 AATTTCGAATACCAAACCTTA
* *
7417 AATTTTGAATACCAAACCTTG
1 AATTTCGAATACCAAACCTTA
7438 AATTTCGAA
1 AATTTCGAA
7447 ATTTAGGGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (21 bp):
AATTTCGAATACCAAACCTTA
Found at i:7523 original size:7 final size:7
Alignment explanation
Indices: 7511--7542 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
7501 TGAGTTTAAC
7511 ATTTGAG
1 ATTTGAG
7518 ATTTGAG
1 ATTTGAG
7525 ATTTGAG
1 ATTTGAG
*
7532 ATTTTAG
1 ATTTGAG
7539 ATTT
1 ATTT
7543 AAGGTTCAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.28, C:0.00, G:0.22, T:0.50
Consensus pattern (7 bp):
ATTTGAG
Found at i:9642 original size:92 final size:92
Alignment explanation
Indices: 9485--9665 Score: 299
Period size: 92 Copynumber: 2.0 Consensus size: 92
9475 ATGCCTTCTG
* * *
9485 ACATACAACCTGATGGAAGATCGTGTACTTGCACCCAAAAATTTGTTTTAACAATTTGCACCTGA
1 ACATACAACCTGATGGAAGATCGTGTACTTGCACCCAAAAATTTGTGTAAACAATTGGCACCTGA
9550 GTTGGATCCTCTCCTTCCTCTAATCTA
66 GTTGGATCCTCTCCTTCCTCTAATCTA
* * **
9577 ACATACAACTTGGTGGAAGATCGTGTACTTGCACCCGGAAATTTGTGTAAACAATTGGCACCTGA
1 ACATACAACCTGATGGAAGATCGTGTACTTGCACCCAAAAATTTGTGTAAACAATTGGCACCTGA
9642 GTTGGATCCTCTCCTTCCTCTAAT
66 GTTGGATCCTCTCCTTCCTCTAAT
9666 TTGTGCAAGG
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 82 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (92 bp):
ACATACAACCTGATGGAAGATCGTGTACTTGCACCCAAAAATTTGTGTAAACAATTGGCACCTGA
GTTGGATCCTCTCCTTCCTCTAATCTA
Found at i:10066 original size:43 final size:42
Alignment explanation
Indices: 9996--10080 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 42
9986 TGGTGCGCTG
* * *
9996 GAACCCATTAATCAAATCAAAAGGATAATAGGTATTTTTGAAA
1 GAACCCATTAATCAAATAAAAAAGATAACAGGT-TTTTTGAAA
10039 GAACCCATTAATCAAATAAAAAAGATAACAGGTTTTTTGAAA
1 GAACCCATTAATCAAATAAAAAAGATAACAGGTTTTTTGAAA
10081 AAGTCAACAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 9 0.23
43 30 0.77
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.27
Consensus pattern (42 bp):
GAACCCATTAATCAAATAAAAAAGATAACAGGTTTTTTGAAA
Found at i:10735 original size:30 final size:29
Alignment explanation
Indices: 10666--10740 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 29
10656 TTTAATATAT
* *
10666 TATATTTTTATAATTTTAAAAATGTTAAA
1 TATATTTTTATTATTTTAAAAATGTAAAA
* *
10695 TCATATTTTTATTATTTTTATAATGTAAAA
1 T-ATATTTTTATTATTTTAAAAATGTAAAA
* *
10725 GTATAATTTTACTATT
1 -TATATTTTTATTATT
10741 ATTACTTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 1 0.03
30 36 0.95
31 1 0.03
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.55
Consensus pattern (29 bp):
TATATTTTTATTATTTTAAAAATGTAAAA
Found at i:14555 original size:40 final size:40
Alignment explanation
Indices: 14464--14568 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 40
14454 TCAATCTGAC
* *
14464 ACATTGCATTGTTTACAACT-TCACTGCCATTTCAATGGTAT
1 ACATTGCAGTGTTTAC-AGTGTCACTGCCATTTCAAT-GTAT
* *
14505 TC-TTGTAGTGTTTACAGTGTCACTGCCATTTCAAT-TAT
1 ACATTGCAGTGTTTACAGTGTCACTGCCATTTCAATGTAT
*
14543 AACATTGCAGTGTTTTCAGTGTCACT
1 -ACATTGCAGTGTTTACAGTGTCACT
14569 ACTAATCGAT
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
38 3 0.06
39 3 0.06
40 47 0.87
41 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (40 bp):
ACATTGCAGTGTTTACAGTGTCACTGCCATTTCAATGTAT
Found at i:21943 original size:21 final size:20
Alignment explanation
Indices: 21893--21945 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
21883 GTAACCCATG
21893 ACCTCTACCAAAAATAATAT
1 ACCTCTACCAAAAATAATAT
*
21913 AGCC-CTTACCGAAAATAATATT
1 A-CCTC-TACCAAAAATAATA-T
21935 ACCTCTACCAA
1 ACCTCTACCAA
21946 CCTCTAGGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
20 2 0.07
21 22 0.81
22 3 0.11
ACGTcount: A:0.43, C:0.28, G:0.04, T:0.25
Consensus pattern (20 bp):
ACCTCTACCAAAAATAATAT
Found at i:29028 original size:3 final size:3
Alignment explanation
Indices: 29020--29049 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
29010 CTCTTAATTC
29020 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
29050 TATTTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:30253 original size:28 final size:29
Alignment explanation
Indices: 30203--30270 Score: 86
Period size: 28 Copynumber: 2.3 Consensus size: 29
30193 CATGTCACAC
*
30203 TAAAAATTAAAGAAAAATTTAAAATA-TA
1 TAAAAATTAAAGAAAAATATAAAATAGTA
30231 TAAAAATTAAA-AAAAATCATAAAATAGTTA
1 TAAAAATTAAAGAAAAAT-ATAAAATAG-TA
30261 TAAAATATTA
1 TAAAA-ATTA
30271 GAGTTAATTC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
27 6 0.17
28 18 0.51
30 7 0.20
31 4 0.11
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.29
Consensus pattern (29 bp):
TAAAAATTAAAGAAAAATATAAAATAGTA
Found at i:33252 original size:12 final size:12
Alignment explanation
Indices: 33235--33260 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33225 TGATAAATAG
33235 TTTATATTTAAA
1 TTTATATTTAAA
33247 TTTATATTTAAA
1 TTTATATTTAAA
33259 TT
1 TT
33261 ATGTAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTATATTTAAA
Found at i:34517 original size:18 final size:18
Alignment explanation
Indices: 34494--34529 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
34484 TACATAGACT
34494 AGAAAAGTGCTTATCCAG
1 AGAAAAGTGCTTATCCAG
34512 AGAAAAGTGCTTATCCAG
1 AGAAAAGTGCTTATCCAG
34530 TCATCCAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (18 bp):
AGAAAAGTGCTTATCCAG
Found at i:38287 original size:30 final size:30
Alignment explanation
Indices: 38252--38313 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
38242 TTTTATTTTA
* *
38252 TTGTTAATTTTATTATTATTTTAGAGGTAT
1 TTGTTAATTTTATTACTATTTTAGAGATAT
38282 TTGTTAATTTTATTACTATTTTAGAGATAT
1 TTGTTAATTTTATTACTATTTTAGAGATAT
38312 TT
1 TT
38314 ATTTGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.02, G:0.11, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTATTACTATTTTAGAGATAT
Found at i:44254 original size:20 final size:18
Alignment explanation
Indices: 44226--44273 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 18
44216 CCACATCAAT
*
44226 AAATAATTTTAAAATTATTA
1 AAATTATTTTAAAA-TA-TA
44246 AAATTATTTTTTAAAATATA
1 AAATTA--TTTTAAAATATA
44266 AAATTATT
1 AAATTATT
44274 AAATATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 2 0.08
20 13 0.52
21 2 0.08
22 8 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AAATTATTTTAAAATATA
Found at i:45427 original size:9 final size:9
Alignment explanation
Indices: 45413--45492 Score: 75
Period size: 9 Copynumber: 9.2 Consensus size: 9
45403 ATTTCAAAAA
45413 AATAATTTT
1 AATAATTTT
45422 AATAATTTT
1 AATAATTTT
45431 AAATTAATTTTT
1 -AA-TAA-TTTT
45443 AAATAATTTT
1 -AATAATTTT
45453 AATAATTTT
1 AATAATTTT
45462 -AT-ATTTT
1 AATAATTTT
45469 AA-AA----
1 AATAATTTT
45473 AATAATTTT
1 AATAATTTT
45482 AATAATTTT
1 AATAATTTT
45491 AA
1 AA
45493 AATCATTTGT
Statistics
Matches: 61, Mismatches: 0, Indels: 20
0.75 0.00 0.25
Matches are distributed among these distances:
4 2 0.03
5 2 0.03
7 5 0.08
8 4 0.07
9 29 0.48
10 6 0.10
11 6 0.10
12 7 0.11
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
AATAATTTT
Found at i:45430 original size:31 final size:29
Alignment explanation
Indices: 45392--45491 Score: 114
Period size: 31 Copynumber: 3.3 Consensus size: 29
45382 AAATTATTTG
45392 ATAATTTTATTATTTCAAAAAAATAATTTTA
1 ATAATTTTATTATTT--AAAAAATAATTTTA
**
45423 ATAATTTTAAATTAATTT-TTAAATAATTTTA
1 ATAATTTT--ATT-ATTTAAAAAATAATTTTA
45454 ATAATTTTA-TATTTTAAAAAATAATTTTA
1 ATAATTTTATTA-TTTAAAAAATAATTTTA
45483 ATAATTTTA
1 ATAATTTTA
45492 AAATCATTTG
Statistics
Matches: 60, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
27 1 0.02
28 4 0.07
29 21 0.35
31 27 0.45
33 3 0.05
34 4 0.07
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (29 bp):
ATAATTTTATTATTTAAAAAATAATTTTA
Found at i:45493 original size:22 final size:22
Alignment explanation
Indices: 45392--45494 Score: 89
Period size: 22 Copynumber: 5.0 Consensus size: 22
45382 AAATTATTTG
* *
45392 ATAATTTT-ATTATTTCAAAAAA
1 ATAATTTTAATAATTT-TAAAAA
45414 ATAATTTTAATAATTTT--AAA
1 ATAATTTTAATAATTTTAAAAA
*
45434 TTAATTTTTAAATAATTTT----A
1 ATAA-TTTT-AATAATTTTAAAAA
45454 ATAATTTT-AT-ATTTTAAAAA
1 ATAATTTTAATAATTTTAAAAA
45474 ATAATTTTAATAATTTTAAAA
1 ATAATTTTAATAATTTTAAAA
45495 TCATTTGTTG
Statistics
Matches: 68, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
16 5 0.07
17 2 0.03
19 4 0.06
20 19 0.28
21 6 0.09
22 26 0.38
23 6 0.09
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAATTTTAATAATTTTAAAAA
Found at i:45494 original size:20 final size:20
Alignment explanation
Indices: 45411--45500 Score: 98
Period size: 20 Copynumber: 4.5 Consensus size: 20
45401 TTATTTCAAA
45411 AAAATAATTTTAATAATTTT
1 AAAATAATTTTAATAATTTT
*
45431 AAATTAATTTTTAAATAATTTT
1 AAAATAA-TTTT-AATAATTTT
45453 --AATAATTTT-AT-ATTTT
1 AAAATAATTTTAATAATTTT
45469 AAAAAATAATTTTAATAATTTT
1 --AAAATAATTTTAATAATTTT
*
45491 AAAATCATTT
1 AAAATAATTT
45501 GTTGACGTGA
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
16 5 0.08
17 2 0.03
19 4 0.07
20 28 0.47
21 6 0.10
22 14 0.24
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (20 bp):
AAAATAATTTTAATAATTTT
Found at i:46336 original size:18 final size:18
Alignment explanation
Indices: 46315--46349 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
46305 ATAAATTATT
*
46315 AAAAATTTTTAAAAAATA
1 AAAAATATTTAAAAAATA
*
46333 AAAAGTATTTAAAAAAT
1 AAAAATATTTAAAAAAT
46350 TGATTTATGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (18 bp):
AAAAATATTTAAAAAATA
Found at i:48884 original size:21 final size:21
Alignment explanation
Indices: 48860--48913 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
48850 GTTGTGATAG
*
48860 TTCTACCGATACAAGT-GTGAC
1 TTCTACCGATACAAGTCATG-C
*
48881 TTCTACCGAAACAAGTCATGC
1 TTCTACCGATACAAGTCATGC
48902 TTCTACCGATAC
1 TTCTACCGATAC
48914 TAAAAACTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 27 0.93
22 2 0.07
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (21 bp):
TTCTACCGATACAAGTCATGC
Found at i:51491 original size:23 final size:23
Alignment explanation
Indices: 51461--51506 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
51451 TATGTCAAGG
51461 TATTCCAAGAACTCAAGTGTATA
1 TATTCCAAGAACTCAAGTGTATA
*
51484 TATTCCAAGAACTCATGTGTATA
1 TATTCCAAGAACTCAAGTGTATA
51507 CGCTATAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (23 bp):
TATTCCAAGAACTCAAGTGTATA
Found at i:51614 original size:29 final size:29
Alignment explanation
Indices: 51572--51632 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
51562 TGTCCACTTC
* * * *
51572 TCCCAGATTGGTACCTAAAGTTTTTTTTG
1 TCCCAAATTAGTACCTAAACTTTTTTTCG
*
51601 TCCCAAATTAGTACCTGAACTTTTTTTCG
1 TCCCAAATTAGTACCTAAACTTTTTTTCG
51630 TCC
1 TCC
51633 ACTGATTTGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (29 bp):
TCCCAAATTAGTACCTAAACTTTTTTTCG
Found at i:52058 original size:38 final size:38
Alignment explanation
Indices: 52007--52129 Score: 158
Period size: 38 Copynumber: 3.3 Consensus size: 38
51997 TCTCGAAAAA
*
52007 AAAAAAAACCCAGTTCACATTTCCTCTTTTGTTTGCTT
1 AAAAAGAACCCAGTTCACATTTCCTCTTTTGTTTGCTT
* * * * *
52045 AAAAAGAACCCAGTTGAAATTGCCTATTTTATTTGCTT
1 AAAAAGAACCCAGTTCACATTTCCTCTTTTGTTTGCTT
* *
52083 AAAAAGAACTCAGTTCACA-TTGCTCTTTTGTTTGCTT
1 AAAAAGAACCCAGTTCACATTTCCTCTTTTGTTTGCTT
*
52120 AAAATGAACC
1 AAAAAGAACC
52130 TAATGATTTG
Statistics
Matches: 70, Mismatches: 15, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
37 22 0.31
38 48 0.69
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.37
Consensus pattern (38 bp):
AAAAAGAACCCAGTTCACATTTCCTCTTTTGTTTGCTT
Found at i:53812 original size:21 final size:21
Alignment explanation
Indices: 53773--53812 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
53763 AACCATACCC
**
53773 GTTGACCATTGACTGTTGATA
1 GTTGACCATTGACCATTGATA
*
53794 GTTGACTATTGACCATTGA
1 GTTGACCATTGACCATTGA
53813 CTTTTTCACC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (21 bp):
GTTGACCATTGACCATTGATA
Found at i:56691 original size:13 final size:13
Alignment explanation
Indices: 56645--56701 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
56635 AGACAAAAAT
56645 AAATAAATAAAT-A
1 AAATAAA-AAATAA
* * *
56658 AAATAAGATAGAA
1 AAATAAAAAATAA
56671 AAATAAAAAATAA
1 AAATAAAAAATAA
56684 AAAT-AAAAATAA
1 AAATAAAAAATAA
56696 AAATAA
1 AAATAA
56702 TTGGGTTGCC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
12 14 0.39
13 22 0.61
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.18
Consensus pattern (13 bp):
AAATAAAAAATAA
Found at i:56698 original size:12 final size:12
Alignment explanation
Indices: 56639--56701 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
56629 TTTCCTAGAC
56639 AAAAATAAATAA-
1 AAAAATAAA-AAT
*
56651 ATAAAT-AAAAT
1 AAAAATAAAAAT
* *
56662 AAGATAGAAAAAT
1 AA-AAATAAAAAT
56675 AAAAAATAAAAAT
1 -AAAAATAAAAAT
56688 AAAAATAAAAAT
1 AAAAATAAAAAT
56700 AA
1 AA
56702 TTGGGTTGCC
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
10 2 0.05
11 3 0.07
12 21 0.51
13 13 0.32
14 2 0.05
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.17
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:60737 original size:21 final size:21
Alignment explanation
Indices: 60711--60750 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
60701 ATAGATGCCT
*
60711 CAGTTTTCTTTTGAAAATCCA
1 CAGTTTGCTTTTGAAAATCCA
60732 CAGTTTGCTTTTGAAAATC
1 CAGTTTGCTTTTGAAAATC
60751 TATAGATTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
CAGTTTGCTTTTGAAAATCCA
Found at i:60760 original size:21 final size:21
Alignment explanation
Indices: 60718--60761 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
60708 CCTCAGTTTT
*
60718 CTTTTGAAAATCCACAGTTTG
1 CTTTTGAAAATCCACAGATTG
* *
60739 CTTTTGAAAATCTATAGATTG
1 CTTTTGAAAATCCACAGATTG
60760 CT
1 CT
60762 GCTGAAATTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (21 bp):
CTTTTGAAAATCCACAGATTG
Found at i:62349 original size:21 final size:22
Alignment explanation
Indices: 62303--62363 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
62293 CGATCTAAGG
62303 AAAAATAAAAGAAACAT--AATT
1 AAAAATAAAAGAAA-ATAGAATT
62324 AAAAATAAAAGAAAATAGAATT
1 AAAAATAAAAGAAAATAGAATT
*
62346 AAAAGA-AATAGAAAATAG
1 AAAA-ATAAAAGAAAATAG
62364 GGAAGTCGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
20 2 0.06
21 14 0.39
22 19 0.53
23 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.10, T:0.16
Consensus pattern (22 bp):
AAAAATAAAAGAAAATAGAATT
Found at i:62356 original size:15 final size:16
Alignment explanation
Indices: 62329--62358 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
62319 TAATTAAAAA
62329 TAAAAGAAAATAGAAT
1 TAAAAGAAAATAGAAT
62345 TAAAAG-AAATAGAA
1 TAAAAGAAAATAGAA
62359 AATAGGGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (16 bp):
TAAAAGAAAATAGAAT
Found at i:63185 original size:19 final size:19
Alignment explanation
Indices: 63161--63203 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
63151 AAACATAAAT
63161 TAAATACAAAT-TTAAATAA
1 TAAATA-AAATCTTAAATAA
* *
63180 TAAATAATATCTTAAATAT
1 TAAATAAAATCTTAAATAA
63199 TAAAT
1 TAAAT
63204 CCTAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAATAAAATCTTAAATAA
Found at i:64268 original size:22 final size:21
Alignment explanation
Indices: 64243--64286 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
64233 TTAGAATTAT
*
64243 ATAATTTAAAATTTTATTAAAA
1 ATAATTTAAAACTTT-TTAAAA
*
64265 ATAATTTTAAACTTTTTAAAA
1 ATAATTTAAAACTTTTTAAAA
64286 A
1 A
64287 AATCAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
ATAATTTAAAACTTTTTAAAA
Found at i:64287 original size:22 final size:24
Alignment explanation
Indices: 64243--64296 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
64233 TTAGAATTAT
*
64243 ATAA-TTTAAAATTTTAT-TAAAA
1 ATAATTTTAAAATTTTATAAAAAA
*
64265 ATAATTTTAAACTTTT-TAAAAAA
1 ATAATTTTAAAATTTTATAAAAAA
64288 ATCAATTTT
1 AT-AATTTT
64297 TTATAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 5 0.19
23 16 0.59
24 6 0.22
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (24 bp):
ATAATTTTAAAATTTTATAAAAAA
Found at i:65822 original size:15 final size:15
Alignment explanation
Indices: 65804--65836 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
65794 ATTTACAAAA
65804 AAAATAAGA-TAATTG
1 AAAATAA-ATTAATTG
65819 AAAATAAATTAATTG
1 AAAATAAATTAATTG
65834 AAA
1 AAA
65837 TTATAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 1 0.06
15 16 0.94
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (15 bp):
AAAATAAATTAATTG
Found at i:65952 original size:23 final size:23
Alignment explanation
Indices: 65905--65972 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
65895 CTTAAATACC
* * *
65905 TTTTTCATTTT-AATATATATTA
1 TTTTACATTTTAAATATTTATAA
65927 TTTTGAC-TTTTAAATATTTATAA
1 TTTT-ACATTTTAAATATTTATAA
65950 TTTTACATTTTAGAAT-TTTATAA
1 TTTTACATTTTA-AATATTTATAA
65973 AAATATTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
22 10 0.26
23 26 0.67
24 3 0.08
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (23 bp):
TTTTACATTTTAAATATTTATAA
Found at i:66136 original size:17 final size:19
Alignment explanation
Indices: 66104--66138 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
66094 ATAGACACTG
66104 AATTATATATAAAAATATT
1 AATTATATATAAAAATATT
66123 AATTA-ATA-AAAAATAT
1 AATTATATATAAAAATAT
66139 ATTTTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 3 0.19
19 5 0.31
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AATTATATATAAAAATATT
Found at i:66140 original size:19 final size:19
Alignment explanation
Indices: 66104--66141 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
66094 ATAGACACTG
*
66104 AATTATATATAAAAATATT
1 AATTATATAAAAAAATATT
66123 AATTA-ATAAAAAATATATT
1 AATTATATAAAAAA-ATATT
66142 TTTAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AATTATATAAAAAAATATT
Found at i:68473 original size:28 final size:26
Alignment explanation
Indices: 68441--68519 Score: 79
Period size: 28 Copynumber: 2.9 Consensus size: 26
68431 CCCTTAAACC
68441 TTAAACCCAAATCTTAAACCTCAAAAT
1 TTAAACCCAAA-CTTAAACCTCAAAAT
* *
68468 TCTAAACCCTAGACTTAAACCTCGAACAT
1 T-TAAACCC-AAACTTAAACCTC-AAAAT
* *
68497 TTAAACCGAAACTCAAA-CTCAAA
1 TTAAACCCAAACTTAAACCTCAAA
68520 TCCGAACCCG
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
25 2 0.05
26 3 0.07
27 8 0.19
28 23 0.53
29 7 0.16
ACGTcount: A:0.46, C:0.28, G:0.04, T:0.23
Consensus pattern (26 bp):
TTAAACCCAAACTTAAACCTCAAAAT
Found at i:83276 original size:29 final size:30
Alignment explanation
Indices: 83225--83460 Score: 234
Period size: 30 Copynumber: 7.9 Consensus size: 30
83215 AAAGGTCCCT
83225 AAACTTTCCAAAAATTCCATTTTT-ACCCC-
1 AAAC-TTCCAAAAATTCCATTTTTGACCCCA
* ** * *
83254 GAACTTCCAAAAATTATATTTTTGACCTCG
1 AAACTTCCAAAAATTCCATTTTTGACCCCA
* * *
83284 AAACTTCTAAAAATTCTA-TTTTAACCCCA
1 AAACTTCCAAAAATTCCATTTTTGACCCCA
*
83313 AAACTTCC-AAAATTCCATTTTTAACCCCA
1 AAACTTCCAAAAATTCCATTTTTGACCCCA
* *
83342 AAACTTCCAAAAATCCCATTTTTGACCCTA
1 AAACTTCCAAAAATTCCATTTTTGACCCCA
* *
83372 AGACTTCCAAAAACTCCATTTTTGACCCCCAA
1 AAACTTCCAAAAATTCCATTTTTGA-CCCC-A
* * *
83404 AAACTTCCAAAAA-TACTTTTTTTACCCTCA
1 AAACTTCCAAAAATTCCATTTTTGACCC-CA
83434 AAACTTCCAAAAATAT-CATTTTT-ACCC
1 AAACTTCCAAAAAT-TCCATTTTTGACCC
83461 TCGAACCTTC
Statistics
Matches: 174, Mismatches: 24, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
28 25 0.14
29 41 0.24
30 76 0.44
31 18 0.10
32 14 0.08
ACGTcount: A:0.37, C:0.28, G:0.03, T:0.33
Consensus pattern (30 bp):
AAACTTCCAAAAATTCCATTTTTGACCCCA
Found at i:83482 original size:29 final size:28
Alignment explanation
Indices: 83235--83519 Score: 163
Period size: 30 Copynumber: 9.7 Consensus size: 28
83225 AAACTTTCCA
*
83235 AAAATTCCATTTTTACCC-C-GAACTTCC
1 AAAATTCCATTTTTACCCTCAAAACTT-C
** *
83262 AAAAATTATATTTTTGA-CCTCGAAACTTC
1 -AAAATTCCATTTTT-ACCCTCAAAACTTC
* *
83291 TAAAAATTCTATTTTAACCC-CAAAACTTCC
1 --AAAATTCCATTTTTACCCTCAAAACTT-C
83321 AAAATTCCATTTTTAACCC-CAAAACTTCC
1 AAAATTCCATTTTT-ACCCTCAAAACTT-C
* *
83350 AAAAATCCCATTTTTGACCCT-AAGACTTCC
1 -AAAATTCCATTTTT-ACCCTCAAAACTT-C
* *
83380 AAAAACTCCATTTTTGACCCCCAAAAACTTCC
1 -AAAATTCCATTTTT-ACCCTC-AAAACTT-C
* **
83412 AAAAATACTTTTTTTACCCTCAAAACTTCC
1 -AAAATTCCATTTTTACCCTCAAAACTT-C
* *
83442 AAAAATAT-CATTTTTACCCTCGAACCTTC
1 -AAAAT-TCCATTTTTACCCTCAAAACTTC
* *
83471 AAAATCTCCATTTTCAACCTCAAAACTCTC
1 AAAAT-TCCATTTTTACCCTCAAAACT-TC
83501 AAAATTACC-TTTTTACCCT
1 AAAATT-CCATTTTTACCCT
83520 TGAATGTTTA
Statistics
Matches: 210, Mismatches: 32, Indels: 29
0.77 0.12 0.11
Matches are distributed among these distances:
28 32 0.15
29 50 0.24
30 104 0.50
31 5 0.02
32 19 0.09
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (28 bp):
AAAATTCCATTTTTACCCTCAAAACTTC
Found at i:83927 original size:96 final size:97
Alignment explanation
Indices: 83819--84004 Score: 245
Period size: 96 Copynumber: 1.9 Consensus size: 97
83809 AAAAACTTAA
* * *
83819 AATCGAGGCAATG-TTCTGTTAT-TTCGAGTT-TCGAAAATTTGCACCTTAACTTACTAGGTGCA
1 AATCGAGGCAATGTTTC-CTTATCTTCGA-TTCT-AAAAATTTACACCTTAACTTACTAGGTGCA
* * *
83881 A-TTTTTCTTCAAATTGAAATAATCGAATACCTTT
63 ACCTTTTCCTCAAATCGAAATAATCGAATACCTTT
*
83915 AATCGAGGCAATGTTTCCTTATCTTCGATTCTAAAAATTTACGCCTTAACTTACTAGGTGCAACC
1 AATCGAGGCAATGTTTCCTTATCTTCGATTCTAAAAATTTACACCTTAACTTACTAGGTGCAACC
*
83980 TTTTCCTCAAATCGAGATAATCGAA
66 TTTTCCTCAAATCGAAATAATCGAA
84005 CATCCTTTCC
Statistics
Matches: 78, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
96 47 0.60
97 31 0.40
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (97 bp):
AATCGAGGCAATGTTTCCTTATCTTCGATTCTAAAAATTTACACCTTAACTTACTAGGTGCAACC
TTTTCCTCAAATCGAAATAATCGAATACCTTT
Found at i:89166 original size:52 final size:52
Alignment explanation
Indices: 89103--89277 Score: 262
Period size: 52 Copynumber: 3.4 Consensus size: 52
89093 TGAATAAGTA
* *
89103 TCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATGGCCATGTG
1 TCATAGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATGGCTATGTG
89155 TCATAGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATGGCTATGTG
1 TCATAGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATGGCTATGTG
* * * * * *
89207 TCATCGTGAGTATATAAATCCTTTACAGATTATGAGGTCTGGTGGCTATATG
1 TCATAGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATGGCTATGTG
89259 TCATCA-TGAGTATATGAAT
1 TCAT-AGTGAGTATATGAAT
89278 GAAATGAAAT
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
52 112 1.00
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (52 bp):
TCATAGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGATGGCTATGTG
Found at i:96004 original size:21 final size:21
Alignment explanation
Indices: 95972--96016 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
95962 ATATTCTTAC
95972 TTTACAAAATAAATTATATTA
1 TTTACAAAATAAATTATATTA
* *
95993 TTTA-AAATATAAATTTTTTTA
1 TTTACAAA-ATAAATTATATTA
96014 TTT
1 TTT
96017 TATATCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTACAAAATAAATTATATTA
Found at i:96751 original size:27 final size:27
Alignment explanation
Indices: 96713--96768 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
96703 CTCTACACCA
96713 TCCATAACATCATAGGGAAAGGGTTCT
1 TCCATAACATCATAGGGAAAGGGTTCT
96740 TCCATAACATCATAGGGAAAGGGTTCT
1 TCCATAACATCATAGGGAAAGGGTTCT
96767 TC
1 TC
96769 ATCTTGAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (27 bp):
TCCATAACATCATAGGGAAAGGGTTCT
Found at i:110057 original size:6 final size:6
Alignment explanation
Indices: 110048--110082 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
110038 AACACTTCCA
*
110048 CTCTCT CTCTCC CTCTCC CTCTCC CTCTCC CTCTC
1 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTC
110083 AACTCTCACC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (6 bp):
CTCTCC
Found at i:116342 original size:18 final size:19
Alignment explanation
Indices: 116311--116349 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
116301 TAAAAAAATT
116311 AAAAATTCATAAAATCTAA
1 AAAAATTCATAAAATCTAA
* *
116330 AAAAATTTA-AAAATTTAA
1 AAAAATTCATAAAATCTAA
116348 AA
1 AA
116350 GTAAGAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAAATTCATAAAATCTAA
Found at i:116450 original size:29 final size:29
Alignment explanation
Indices: 116387--116450 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
116377 TATCAATTAA
* ** *
116387 AAAAATAATCTAATTATTTAAAAATATAT
1 AAAAATAATCTAATGATGAAAAAATAAAT
116416 ATAAAATAATCTAA-GATGAAAAAATAAATT
1 A-AAAATAATCTAATGATGAAAAAATAAA-T
116446 AAAAA
1 AAAAA
116451 AAGAATTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
29 15 0.52
30 14 0.48
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (29 bp):
AAAAATAATCTAATGATGAAAAAATAAAT
Found at i:116898 original size:23 final size:23
Alignment explanation
Indices: 116872--116917 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
116862 ATTTTCGAAT
**
116872 TTCGAATTATTCGAATCGAGTTA
1 TTCGAATTAAACGAATCGAGTTA
*
116895 TTCGAGTTAAACGAATCGAGTTA
1 TTCGAATTAAACGAATCGAGTTA
116918 AATTTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.35
Consensus pattern (23 bp):
TTCGAATTAAACGAATCGAGTTA
Found at i:117227 original size:58 final size:58
Alignment explanation
Indices: 117116--117228 Score: 174
Period size: 58 Copynumber: 1.9 Consensus size: 58
117106 ACCCATCAAC
*
117116 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTATTCAAAAACACTCCT
1 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTACTCAAAAACACTCCT
* * *
117174 AAACTAAACCCAAATATTTTTAAACTCAAATATAATTTTATTCCT-AAATAACACT
1 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTACTCAAA-AACACT
117229 AATAAACAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
57 3 0.06
58 47 0.94
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (58 bp):
AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTACTCAAAAACACTCCT
Found at i:125768 original size:19 final size:18
Alignment explanation
Indices: 125718--125783 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 18
125708 GACTCCTAGA
*
125718 TTTAAGATTTTTGTATTTTT
1 TTTAA-ATTATTGT-TTTTT
* *
125738 TTAAAAATATTGTTTTTT
1 TTTAAATTATTGTTTTTT
125756 TTTAAATTGATTGTTTTTAT
1 TTTAAATT-ATTGTTTTT-T
125776 GTTTAAAT
1 -TTTAAAT
125784 CAATTGTCAT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
18 11 0.29
19 15 0.39
20 5 0.13
21 7 0.18
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (18 bp):
TTTAAATTATTGTTTTTT
Found at i:125789 original size:21 final size:19
Alignment explanation
Indices: 125728--125790 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
125718 TTTAAGATTT
* *
125728 TTGTATTTTTTTAAA-AATA
1 TTGTTTTTTTTTAAATCA-A
**
125747 TTGTTTTTTTTTAAATTGA
1 TTGTTTTTTTTTAAATCAA
125766 TTGTTTTTATGTTTAAATCAA
1 TTGTTTTT-T-TTTAAATCAA
125787 TTGT
1 TTGT
125791 CATGTTGAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 23 0.64
20 1 0.03
21 12 0.33
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.62
Consensus pattern (19 bp):
TTGTTTTTTTTTAAATCAA
Found at i:125838 original size:55 final size:55
Alignment explanation
Indices: 125742--125900 Score: 201
Period size: 55 Copynumber: 2.9 Consensus size: 55
125732 ATTTTTTTAA
* * * * *
125742 AAATATTGTTTTTTTTTAAATTGATTGTTTTTATGTTTAAATCAATTGTCATGTTG
1 AAATATTG-TTTATTTTGAATCGATTGTTTATATGTTTAAATCAATTATCATGTTG
* *
125798 AAATATTGTTTATTTTGAATCGATTATTTATATGTTTAAATCGATTATCATGTTG
1 AAATATTGTTTATTTTGAATCGATTGTTTATATGTTTAAATCAATTATCATGTTG
* ** * *
125853 AAATGTTACTTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTAT
1 AAATATTGTTTATTTTGAATCGATTGTTTATATGTTTAAATCAATTAT
125901 TCTCCAATAT
Statistics
Matches: 91, Mismatches: 12, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
55 83 0.91
56 8 0.09
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.53
Consensus pattern (55 bp):
AAATATTGTTTATTTTGAATCGATTGTTTATATGTTTAAATCAATTATCATGTTG
Found at i:125839 original size:21 final size:20
Alignment explanation
Indices: 125806--125901 Score: 62
Period size: 21 Copynumber: 5.0 Consensus size: 20
125796 TGAAATATTG
*
125806 TTTAT-TTTGAATCGATTAT
1 TTTATGTTTAAATCGATTAT
125825 TTATATGTTTAAATCGATTA-
1 TT-TATGTTTAAATCGATTAT
* *
125845 -TCATGTTGAAAT-G-TTA-
1 TTTATGTTTAAATCGATTAT
* * * *
125861 CTTCT-TTTGAATCGATTGT
1 TTTATGTTTAAATCGATTAT
125880 TTATATGTTTAAATCGATTAT
1 TT-TATGTTTAAATCGATTAT
125901 T
1 T
125902 CTCCAATATT
Statistics
Matches: 57, Mismatches: 12, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
16 8 0.14
17 4 0.07
18 11 0.19
19 4 0.07
20 5 0.09
21 25 0.44
ACGTcount: A:0.28, C:0.07, G:0.12, T:0.52
Consensus pattern (20 bp):
TTTATGTTTAAATCGATTAT
Found at i:130005 original size:24 final size:25
Alignment explanation
Indices: 129962--130009 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
129952 CGGAATGTTT
*
129962 AAATTAATTTAATATATATTTTTTG
1 AAATTAATTAAATATATATTTTTTG
*
129987 AAATT-ATTAAATATCTATTTTTT
1 AAATTAATTAAATATATATTTTTT
130010 ATTTTGATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (25 bp):
AAATTAATTAAATATATATTTTTTG
Found at i:133428 original size:4 final size:4
Alignment explanation
Indices: 133421--133464 Score: 88
Period size: 4 Copynumber: 11.0 Consensus size: 4
133411 TATATATATA
133421 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
133465 CTTATAAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TATT
Found at i:135929 original size:41 final size:41
Alignment explanation
Indices: 135869--135946 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
135859 GTGTGTGCTA
* * *
135869 GTATAGATGCTTCAATTTACTCGATGCTACACCGTGTCTCG
1 GTATAGATGCCTCAATTTACCCGATGATACACCGTGTCTCG
** *
135910 GTATAGATGCCTCGGTTTACCCGATGATACACTGTGT
1 GTATAGATGCCTCAATTTACCCGATGATACACCGTGT
135947 ATGCCCGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (41 bp):
GTATAGATGCCTCAATTTACCCGATGATACACCGTGTCTCG
Found at i:135973 original size:43 final size:43
Alignment explanation
Indices: 135858--137771 Score: 1100
Period size: 43 Copynumber: 44.7 Consensus size: 43
135848 ATATTTGTAT
* * ** * * *
135858 TGTGTGTGCTAGTATAGATGCTTCAATTTACTCGATGCTACAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * *
135901 CGTGTCT--CGGTATAGATGCCTCGGTTTACCCGATGATACAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * * *
135942 TGTGTATGCCCGTATAGATGTCTCGGCTTACCTGATGATGTAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
** * * * *
135985 AATATGTGCCTGTATAGATGCTTTGGTTTACCCGATGATGCA-
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * *** * *
136027 T-TTTGTGCCATTATATATATGCCTTAATTTACTCGATGATGCAT
1 TGTGTGTGCCA--GTATAGATGCCTCGGTTTACCCGATGATGCAC
** *
136071 TGTGTGTGCCAGTATAGATGTTTCGGTTTACTCGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * *
136114 TATCTGTGCTAGTATAGATGTCTCGATTTACCCGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * ** * *
136157 TGTGTGTACCCGTATAGATGCCTCAATTTACTCGATGATACAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* *
136200 TGTGTGTGCTAGTATA-ATGGTCTCGGTTTACCCGATGATGCAC
1 TGTGTGTGCCAGTATAGAT-GCCTCGGTTTACCCGATGATGCAC
* **
136243 TGTGTGTGCCAGT-TAGATGCCTTGGTTTACTTGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * *
136285 TGTGTGTGCTAGTATAGATGCCTCGGTTTACCCGATGATACAT
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * * *
136328 TGTGTATGCCCGTATAGATGTCTCGGCTTACCTGATGATGTAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
** * * * *
136371 AATATGTGCCTGTATAGATGCTTTGGTTTACCCGATGATGCA-
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * *** * * *
136413 T-TTTGTGCCATTATATATATGCCTTAATTTACTCGATAATGCAT
1 TGTGTGTGCCA--GTATAGATGCCTCGGTTTACCCGATGATGCAC
** * * *
136457 TGTGTGTGCCAGTATAGATGTTTCGGTTTACTCGATGACGTAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * *
136500 TATCTGTGCTAGTATAGATGTCTCGATTTACCCGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * ** * *
136543 TGTGTGTACCCGTATAGATGCCTCAATTTACTCGATGATACAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* *
136586 TGTGTGTGCTAGTATA-ATGGTCTCGGTTTACCCGATGATGCAC
1 TGTGTGTGCCAGTATAGAT-GCCTCGGTTTACCCGATGATGCAC
* * **
136629 TGTGTGTACCAGT-TAGATGCCTTGGTTTACTTGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * *
136671 TGTGTGTGCTAGTATAGATGCCTCGATTTACCCGATGAGGCAT
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * * * * ** * * *
136714 TGTGTGCGTCAATATAAATACCACGATTTACCTAATTAAGCAG
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* ** * * ** *
136757 TTTGTGTGTAAGTGTAGATGCCTCGATTTACTAGATGATACAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * * * *
136800 --TATGTGCCAATATAGATACTTCGATTTACCTGATGACGCAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * ** *
136841 TATGTGTGCCAGTATAGATACCTCGATTTACTTGATGACGCAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* ** * * *
136884 TGCGTGTTTCAGTGTAGATG-CTGCGGTTTCCCCGATGATTCAC
1 TGTGTGTGCCAGTATAGATGCCT-CGGTTTACCCGATGATGCAC
* * * * *
136927 TGTGTGTGTCAGTATAGATGACTCAGTTTTCTCGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * ** * * * ** **
136970 TTTGTGTGCAAAAATAGATGCATCAGTTTAACTAATGACACAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * ** * *
137013 TGCGTGTGCTC-GTACAGATGCCTCAATTTTCTCGATGATGCA-
1 TGTGTGTGC-CAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * *
137055 TAATGTGTGCTAGTATAGATGACTCGATTTACCCGATAATGCA-
1 T-GTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * *
137098 T-TGTGTGTCAGTATAGATGCCTCGATTTACCAGATGAT-C-C
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * *** * * * * *
137138 TTTATGTGTTGGTATAGATGTCTCGGTTTACCTGATAATGTAA
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * *
137181 TATGTGTTAGCCAGTATAAATGTCTCAGTTTACACGATGATGCAC
1 TGTGTG-T-GCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* *** * * *
137226 TATGTGTAATAATATAAATGCGTCGGTTTACCCGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * *
137269 TGTGTGTGTCAATATAGATACCTTGGTTTACCCGATTATGCAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
** * * * * * *** * * *
137312 TGCATATGCCAGTATATA-GACGTCAGTTCAATTGATTATTCAT
1 TGTGTGTGCCAGTATAGATG-CCTCGGTTTACCCGATGATGCAC
* * * ** *
137355 TGTGTGTGCTAGTATAGATGTCTTGAATTACCCGATGATGTAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * ** * * *
137398 TGTGTGTGCCAATATAAATGTCTCGGTTTACTAGATAATGTAT
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * *
137441 TGTGTGTACAAGTATAGATGTCAT-GGTTAACCCGATAATGCAC
1 TGTGTGTGCCAGTATAGATG-CCTCGGTTTACCCGATGATGCAC
* * *
137484 TGTGTGTGCCAGTATAGATGTCTCGATTTACCCGATGATGCAT
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * * *
137527 TATATGTGCCAGCATAGATGCCTCGATTTACTCGATGATACAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * * *
137570 TATGTATGCCAAG-ATAGATGCATCAGTTTACTCGATGAAGCAC
1 TGTGTGTGCC-AGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * **
137613 TGCGTGTGCTAGTATAAATGCCTCGGTTTACTCGATGATATAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * ** * ** **
137656 TGTGTATACCCGTATAGATGTTTCGATTTACCAAATGATATAC
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * * * * * *
137699 TATGTGTGCTAGTATAGATCCCTCGATGTACTCGATGATGGAT
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
* * * **
137742 TATATTTGTAAGTATAGATGCCTCGGTTTA
1 TGTGTGTGCCAGTATAGATGCCTCGGTTTA
137772 TTCGATAGTA
Statistics
Matches: 1411, Mismatches: 425, Indels: 70
0.74 0.22 0.04
Matches are distributed among these distances:
40 2 0.00
41 138 0.10
42 77 0.05
43 1136 0.81
44 10 0.01
45 48 0.03
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (43 bp):
TGTGTGTGCCAGTATAGATGCCTCGGTTTACCCGATGATGCAC
Found at i:136623 original size:386 final size:386
Alignment explanation
Indices: 135910--136718 Score: 1546
Period size: 386 Copynumber: 2.1 Consensus size: 386
135900 CCGTGTCTCG
*
135910 GTATAGATGCCTCGGTTTACCCGATGATACACTGTGTATGCCCGTATAGATGTCTCGGCTTACCT
1 GTATAGATGCCTCGGTTTACCCGATGATACATTGTGTATGCCCGTATAGATGTCTCGGCTTACCT
135975 GATGATGTACAATATGTGCCTGTATAGATGCTTTGGTTTACCCGATGATGCATTTTGTGCCATTA
66 GATGATGTACAATATGTGCCTGTATAGATGCTTTGGTTTACCCGATGATGCATTTTGTGCCATTA
*
136040 TATATATGCCTTAATTTACTCGATGATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTACTCG
131 TATATATGCCTTAATTTACTCGATAATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTACTCG
*
136105 ATGATGCACTATCTGTGCTAGTATAGATGTCTCGATTTACCCGATGATGCACTGTGTGTACCCGT
196 ATGACGCACTATCTGTGCTAGTATAGATGTCTCGATTTACCCGATGATGCACTGTGTGTACCCGT
136170 ATAGATGCCTCAATTTACTCGATGATACACTGTGTGTGCTAGTATAATGGTCTCGGTTTACCCGA
261 ATAGATGCCTCAATTTACTCGATGATACACTGTGTGTGCTAGTATAATGGTCTCGGTTTACCCGA
*
136235 TGATGCACTGTGTGTGCCAGTTAGATGCCTTGGTTTACTTGATGATGCACTGTGTGTGCTA
326 TGATGCACTGTGTGTACCAGTTAGATGCCTTGGTTTACTTGATGATGCACTGTGTGTGCTA
136296 GTATAGATGCCTCGGTTTACCCGATGATACATTGTGTATGCCCGTATAGATGTCTCGGCTTACCT
1 GTATAGATGCCTCGGTTTACCCGATGATACATTGTGTATGCCCGTATAGATGTCTCGGCTTACCT
136361 GATGATGTACAATATGTGCCTGTATAGATGCTTTGGTTTACCCGATGATGCATTTTGTGCCATTA
66 GATGATGTACAATATGTGCCTGTATAGATGCTTTGGTTTACCCGATGATGCATTTTGTGCCATTA
136426 TATATATGCCTTAATTTACTCGATAATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTACTCG
131 TATATATGCCTTAATTTACTCGATAATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTACTCG
*
136491 ATGACGTACTATCTGTGCTAGTATAGATGTCTCGATTTACCCGATGATGCACTGTGTGTACCCGT
196 ATGACGCACTATCTGTGCTAGTATAGATGTCTCGATTTACCCGATGATGCACTGTGTGTACCCGT
136556 ATAGATGCCTCAATTTACTCGATGATACACTGTGTGTGCTAGTATAATGGTCTCGGTTTACCCGA
261 ATAGATGCCTCAATTTACTCGATGATACACTGTGTGTGCTAGTATAATGGTCTCGGTTTACCCGA
136621 TGATGCACTGTGTGTACCAGTTAGATGCCTTGGTTTACTTGATGATGCACTGTGTGTGCTA
326 TGATGCACTGTGTGTACCAGTTAGATGCCTTGGTTTACTTGATGATGCACTGTGTGTGCTA
* **
136682 GTATAGATGCCTCGATTTACCCGATGAGGCATTGTGT
1 GTATAGATGCCTCGGTTTACCCGATGATACATTGTGT
136719 GCGTCAATAT
Statistics
Matches: 415, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
386 415 1.00
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (386 bp):
GTATAGATGCCTCGGTTTACCCGATGATACATTGTGTATGCCCGTATAGATGTCTCGGCTTACCT
GATGATGTACAATATGTGCCTGTATAGATGCTTTGGTTTACCCGATGATGCATTTTGTGCCATTA
TATATATGCCTTAATTTACTCGATAATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTACTCG
ATGACGCACTATCTGTGCTAGTATAGATGTCTCGATTTACCCGATGATGCACTGTGTGTACCCGT
ATAGATGCCTCAATTTACTCGATGATACACTGTGTGTGCTAGTATAATGGTCTCGGTTTACCCGA
TGATGCACTGTGTGTACCAGTTAGATGCCTTGGTTTACTTGATGATGCACTGTGTGTGCTA
Found at i:136808 original size:386 final size:385
Alignment explanation
Indices: 135910--136978 Score: 1290
Period size: 386 Copynumber: 2.8 Consensus size: 385
135900 CCGTGTCTCG
* * * * ** * ** * *
135910 GTATAGATGCCTCGGTTTACCCGATGATACACTGTGTATGCCCGTATAGATGTCTCGGCTTACCT
1 GTATAGATGCCTCGATTTACCCGATGAGACATTGTGTACGCCAATATAAATACCACGACTTACCT
* * * * * * * * *
135975 GATGATGTACAATATGTGCCTGTATAGATGCTTTGGTTTACCCGATGATGCATTTTGTGCCATTA
66 AATGAAG-ACAATATGTGCCTGTATAGATGCCTCGATTTACCAGATGATACACTATGTGCCATTA
136040 TATATATGCCTTAATTTACTCGATGATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTACTCG
130 TATATATGCCTTAATTTACTCGATGATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTACTCG
*
136105 ATGATGCACTATCTGTGCTAGTATAGATGTCTCGATTTACCCGATGATGCACTGTGTGTACCCGT
195 ATGACGCACTATCTGTGCTAGTATAGATGTCTCGATTTACCCGATGATGCACTGTGTGTACCCGT
136170 ATAGATGCCTCAATTTACTCGATGATACACTGTGTGTGCTAGTATAATGGTCTCGGTTTACCCGA
260 ATAGATGCCTCAATTTACTCGATGATACACTGTGTGTGCTAGTATAATGGTCTCGGTTTACCCGA
*
136235 TGATGCACTGTGTGTGCCAGTTAGATGCCTTGGTTTACTTGATGATGCACTGTGTGTGCTA
325 TGATGCACTGTGTGTACCAGTTAGATGCCTTGGTTTACTTGATGATGCACTGTGTGTGCTA
* * * ** * ** * *
136296 GTATAGATGCCTCGGTTTACCCGATGATACATTGTGTATGCCCGTATAGATGTCTCGGCTTACCT
1 GTATAGATGCCTCGATTTACCCGATGAGACATTGTGTACGCCAATATAAATACCACGACTTACCT
* * * * * * * * *
136361 GATGATGTACAATATGTGCCTGTATAGATGCTTTGGTTTACCCGATGATGCATTTTGTGCCATTA
66 AATGAAG-ACAATATGTGCCTGTATAGATGCCTCGATTTACCAGATGATACACTATGTGCCATTA
*
136426 TATATATGCCTTAATTTACTCGATAATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTACTCG
130 TATATATGCCTTAATTTACTCGATGATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTACTCG
*
136491 ATGACGTACTATCTGTGCTAGTATAGATGTCTCGATTTACCCGATGATGCACTGTGTGTACCCGT
195 ATGACGCACTATCTGTGCTAGTATAGATGTCTCGATTTACCCGATGATGCACTGTGTGTACCCGT
136556 ATAGATGCCTCAATTTACTCGATGATACACTGTGTGTGCTAGTATAATGGTCTCGGTTTACCCGA
260 ATAGATGCCTCAATTTACTCGATGATACACTGTGTGTGCTAGTATAATGGTCTCGGTTTACCCGA
136621 TGATGCACTGTGTGTACCAGTTAGATGCCTTGGTTTACTTGATGATGCACTGTGTGTGCTA
325 TGATGCACTGTGTGTACCAGTTAGATGCCTTGGTTTACTTGATGATGCACTGTGTGTGCTA
* * * *
136682 GTATAGATGCCTCGATTTACCCGATGAGGCATTGTGTGCGTCAATATAAATACCACGATTTACCT
1 GTATAGATGCCTCGATTTACCCGATGAGACATTGTGTACGCCAATATAAATACCACGACTTACCT
* * * ** * *
136747 AATTAAG-CAGTTTGTGTGTAAGTGTAGATGCCTCGATTTACTAGATGATACACTATGTGCCA--
66 AATGAAGACAATATGTGCCT--GTATAGATGCCTCGATTTACCAGATGATACACTATGTGCCATT
* * * * * * *** *
136809 ATATAGAT-ACTTCGATTTAC-CTGATGACGCACTATGTGTGCCAGTATAGATACCTCGATTTAC
129 ATATATATGCCTT-AATTTACTC-GATGATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTAC
* * * * * * *
136872 TTGATGACGCACT-GC-GTGTTTCAGTGTAGATG-CTGCGGTTTCCCCGATGATTCACTGTGTGT
192 TCGATGACGCACTATCTGTG-CT-AGTATAGATGTCT-CGATTTACCCGATGATGCACTGTGTGT
** * * * * * *
136934 GTCAGTATAGATGACTCAGTTTTCTCGATGATGCACTTTGTGTGC
254 ACCCGTATAGATGCCTCAATTTACTCGATGATACACTGTGTGTGC
136979 AAAAATAGAT
Statistics
Matches: 614, Mismatches: 62, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
382 3 0.00
383 8 0.01
384 135 0.22
386 468 0.76
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (385 bp):
GTATAGATGCCTCGATTTACCCGATGAGACATTGTGTACGCCAATATAAATACCACGACTTACCT
AATGAAGACAATATGTGCCTGTATAGATGCCTCGATTTACCAGATGATACACTATGTGCCATTAT
ATATATGCCTTAATTTACTCGATGATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTACTCGA
TGACGCACTATCTGTGCTAGTATAGATGTCTCGATTTACCCGATGATGCACTGTGTGTACCCGTA
TAGATGCCTCAATTTACTCGATGATACACTGTGTGTGCTAGTATAATGGTCTCGGTTTACCCGAT
GATGCACTGTGTGTACCAGTTAGATGCCTTGGTTTACTTGATGATGCACTGTGTGTGCTA
Found at i:137185 original size:41 final size:41
Alignment explanation
Indices: 137060--137190 Score: 129
Period size: 41 Copynumber: 3.2 Consensus size: 41
137050 ATGCATAATG
* * * *
137060 TGTGCTAGTATAGATGACTCGATTTACCCGATAATGCATTG
1 TGTGTTAGTATAGATGACTCGATTTACCAGATAATGTATTA
* * * *
137101 TGTGTCAGTATAGATGCCTCGATTTACCAGATGATCCT-TTA
1 TGTGTTAGTATAGATGACTCGATTTACCAGATAAT-GTATTA
* * * * *
137142 TGTGTTGGTATAGATGTCTCGGTTTACCTGATAATGTAATA
1 TGTGTTAGTATAGATGACTCGATTTACCAGATAATGTATTA
137183 TGTGTTAG
1 TGTGTTAG
137191 CCAGTATAAA
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
40 1 0.01
41 70 0.99
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (41 bp):
TGTGTTAGTATAGATGACTCGATTTACCAGATAATGTATTA
Found at i:137883 original size:43 final size:43
Alignment explanation
Indices: 137836--138783 Score: 281
Period size: 43 Copynumber: 22.4 Consensus size: 43
137826 GATGCCTCAA
* * *
137836 TTTACCCGATGATGCATTATGTGTACCAGGATAGATGCTTCGG
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
* * * * * *
137879 TTTACTCGATG-T--ACTCTGTCTGCCAGTATAGATGC-CCCG
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
* * *
137918 ATTTACCCGATGATGCACCATGTGTGCCTGTATAGATGCCTTC-G
1 -TTTACCCGATGATGCACTATGTGTACCAGTATAGATG-CTTCTG
* * * * * * * *
137962 TTTACCAGATGCTACATTGTATGCGT-TC-GTATAGATGGTTCTTTT
1 TTTACCCGATGATGCA--CTATGTGTACCAGTATAGATGCTTC--TG
* * *
138007 TTTACCCGATGATACA-T-TGTGTACCCGTATAGATGGTT-TCG
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCT-G
* * * * * *
138048 TGTACCCGATGATGCACTGTGTGTACCCGTATAGATGTTTTTA
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
** * * * * *
138091 TTTACCTAATGATGCACTGTGTGTGCCCGTATATATGTTTCTG
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
* * *
138134 TTTACCCGATGATGCATTATGT-T-CCCGTATAGATGGTT-TCG
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCT-G
* * * * *
138175 TTTACTCGATGAAGCTCTA--TGTACCCGTATAGATGCTT-TCA
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCT-G
* * ** * * * * **
138216 TTTACTCGATAACACATTGTGTGTGCGC-GTATAGATGCCTCAA
1 TTTACCCGATGATGCACTATGTGTAC-CAGTATAGATGCTTCTG
*** * * * * ** * * *
138259 TTTACTTAAGGGTACACTGTGTGTGTCAATATAGGTGCCTC-G
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
** * * * * * * **
138301 ATTTATTCGTTGATGCATTGTGTGTGCCCGTATAGATGCCTAGG
1 -TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
** *** * * *
138345 TTTACTTGATGATGTGTTGTGTGTATC-GATATAGAT-ATATC-G
1 TTTACCCGATGATGCACTATGTGTACCAG-TATAGATGCT-TCTG
* * * * *
138387 ATTTACCCGATGATGCATTATGTATGCTC-GTATAGATATCTT-AG
1 -TTTACCCGATGATGCACTATGTGTAC-CAGTATAGAT-GCTTCTG
* * * *
138431 -TTACTCGATGGTGCAC--TGTGTGCCCGTATAGATGCTTC-G
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
* * * * * *
138470 GTTACCCGATGATCCATTATGTGTGCCAGTATAGATCCTTCAG
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
* * * * *
138513 -TTATCCGATGATACACTATGTGTGCCAGTATAGATACATT-GG
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGC-TTCTG
* * * * * *
138555 TTTACCCGATAATGCACTGTGTATACCAGTATAAATGCGTCGG
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
* * *
138598 TTTACTCGATGATGCACTATGTGTGCCAGTATAGATGCCTC-G
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
* * *
138640 ATTTACTCGATGATGTA-T-TGTGTGCCAGTATAGATG--TCTCG
1 -TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCT-G
* * * * * **
138681 ATTTACCGGATGATGTACTATGTGTGCCAATATAGATGCCTCAA
1 -TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
* ** * * * * * **
138725 TGTACTTGATGATGGATTATGTTTGCCAGTATAGATGCCTAGG
1 TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
138768 TTTACCCGATGATGCA
1 TTTACCCGATGATGCA
138784 TTTTGTATTC
Statistics
Matches: 700, Mismatches: 155, Indels: 100
0.73 0.16 0.10
Matches are distributed among these distances:
39 10 0.01
40 57 0.08
41 111 0.16
42 82 0.12
43 407 0.58
44 10 0.01
45 23 0.03
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.36
Consensus pattern (43 bp):
TTTACCCGATGATGCACTATGTGTACCAGTATAGATGCTTCTG
Found at i:138052 original size:22 final size:22
Alignment explanation
Indices: 138024--138084 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
138014 GATGATACAT
* *
138024 TGTGTACCCGTATAGATG-GTT
1 TGTGTACCCGTATAGATGACTG
138045 TCGTGTACCCG-AT-GATGCACTG
1 T-GTGTACCCGTATAGATG-ACTG
138067 TGTGTACCCGTATAGATG
1 TGTGTACCCGTATAGATG
138085 TTTTTATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
20 4 0.12
21 12 0.36
22 13 0.39
23 4 0.12
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.33
Consensus pattern (22 bp):
TGTGTACCCGTATAGATGACTG
Found at i:138621 original size:86 final size:83
Alignment explanation
Indices: 138517--138717 Score: 224
Period size: 84 Copynumber: 2.4 Consensus size: 83
138507 CTTCAGTTAT
* * *
138517 CCGATGATACACTATGTGTGCCAGTATAGATACATTGGTTTACCCGATAATGCACTGTGTATACC
1 CCGATGATGCACTATGTGTGCCAGTATAGATACATCGATTTACCCGATAATGCA-T-TGTATACC
*
138582 AGTATAAATG-CGTCGGTTTA
64 AGTATAAATGTC-TCGATTTA
* * * * * * *
138602 CTCGATGATGCACTATGTGTGCCAGTATAGATGCCTCGATTTACTCGATGATGTATTGTGTGCCA
1 C-CGATGATGCACTATGTGTGCCAGTATAGATACATCGATTTACCCGATAATGCATTGTATACCA
*
138667 GTATAGATGTCTCGATTTA
65 GTATAAATGTCTCGATTTA
* *
138686 CCGGATGATGTACTATGTGTGCCAATATAGAT
1 CC-GATGATGCACTATGTGTGCCAGTATAGAT
138718 GCCTCAATGT
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
83 1 0.01
84 50 0.51
85 3 0.03
86 45 0.45
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (83 bp):
CCGATGATGCACTATGTGTGCCAGTATAGATACATCGATTTACCCGATAATGCATTGTATACCAG
TATAAATGTCTCGATTTA
Found at i:138672 original size:127 final size:129
Alignment explanation
Indices: 137823--138783 Score: 350
Period size: 127 Copynumber: 7.6 Consensus size: 129
137813 TGTATCCCAA
** * * * * *
137823 ATAGATGCCTCAATTTACCCGATGATGCATTATGTGTACCAGGATAGATGCTTCGGTTTACTCGA
1 ATAGATGCCTCGGTTTACTCGATGATGCATTATGTGTGCCAGTATAGATGCCTCGATTTACTCGA
* * * * * * * * *
137888 TG-T--ACTCTGTCTGCCAGTATAGATGCCCCGATTTACCCGATGATGCACCATGTGTGCCTGT
66 TGATGCACTATGTGTGCCAGTATAGATGACTCGATTTACCCGATAATGCACTATGTATACCAGT
* * * * * ***
137949 ATAGATGCCTTC-GTTTAC-CAGATGCTACATTGTATGCGT-TC-GTATAGATGGTTCTTTTTTT
1 ATAGATGCC-TCGGTTTACTC-GATGATGCA-T-TATGTGTGCCAGTATAGAT-G-CCTCGATTT
* * * * ** * * * *
138010 ACCCGATGATACA-T-TGTGTACCCGTATAGATGGTTTCG-TGTACCCGATGATGCACTGTGTGT
60 ACTCGATGATGCACTATGTGTGCCAGTATAGAT-GACTCGATTTACCCGATAATGCACTATGTAT
*
138072 ACCCGT
124 ACCAGT
** *** * * * * * ** *
138078 ATAGATGTTTTTATTTAC-CTAATGATGCACTGTGTGTGCCCGTATATATGTTTCTG-TTTACCC
1 ATAGATGCCTCGGTTTACTC-GATGATGCATTATGTGTGCCAGTATAGATGCCTC-GATTTACTC
* * ** * *
138141 GATGATGCATTATGT-T-CCCGTATAGATGGTTTCG-TTTACTCGATGAA-GCTCTATG--TACC
64 GATGATGCACTATGTGTGCCAGTATAGAT-GACTCGATTTACCCGAT-AATGCACTATGTATACC
*
138200 CGT
127 AGT
* * * ** * * *
138203 ATAGATGCTTTC-ATTTACTCGATAACACATTGTGTGTGCGC-GTATAGATGCCTCAATTTACTT
1 ATAGATGC-CTCGGTTTACTCGATGATGCATTATGTGTGC-CAGTATAGATGCCTCGATTTACTC
* * * * * * * * * ** * * * * * * *
138266 AAGGGTACACTGTGTGTGTCAATATAGGTGCCTCGATTTATTCGTTGATGCATTGTGTGTGCCCG
64 GATGATGCACTATGTGTGCCAGTATAGATGACTCGATTTACCCGATAATGCACTATGTATACCAG
138331 T
129 T
* * ** * ** *** *
138332 ATAGATGCCTAGGTTTACTTGATGATGTGTTGTGTGTATC-GATATAGATATATCGATTTACCCG
1 ATAGATGCCTCGGTTTACTCGATGATGCATTATGTGTGCCAG-TATAGATGCCTCGATTTACTCG
* * * * * ** * * *
138396 ATGATGCATTATGTATGCTC-GTATAGAT-A-TCTTAGTTACTCGATGGTGCAC--TGTGTGCCC
65 ATGATGCACTATGTGTGC-CAGTATAGATGACTC-GATTTACCCGATAATGCACTATGTATACCA
138456 GT
128 GT
* * * *
138458 ATAGATGCTTCGG-TTACCCGATGATCCATTATGTGTGCCAGTATAGAT-CCTTC-AGTTA-TCC
1 ATAGATGCCTCGGTTTACTCGATGATGCATTATGTGTGCCAGTATAGATGCC-TCGATTTACT-C
* * * *
138519 GATGATACACTATGTGTGCCAGTATAGAT-ACATTGGTTTACCCGATAATGCACTGTGTATACCA
64 GATGATGCACTATGTGTGCCAGTATAGATGAC-TCGATTTACCCGATAATGCACTATGTATACCA
138583 GT
128 GT
* * *
138585 ATAAATGCGTCGGTTTACTCGATGATGCACTATGTGTGCCAGTATAGATGCCTCGATTTACTCGA
1 ATAGATGCCTCGGTTTACTCGATGATGCATTATGTGTGCCAGTATAGATGCCTCGATTTACTCGA
* * * * * * * *
138650 TGATGTA-T-TGTGTGCCAGTATAGATGTCTCGATTTACCGGATGATGTACTATGTGTGCCAAT
66 TGATGCACTATGTGTGCCAGTATAGATGACTCGATTTACCCGATAATGCACTATGTATACCAGT
** * * * * * * *
138712 ATAGATGCCTCAATGTACTTGATGATGGATTATGTTTGCCAGTATAGATGCCTAGGTTTACCCGA
1 ATAGATGCCTCGGTTTACTCGATGATGCATTATGTGTGCCAGTATAGATGCCTCGATTTACTCGA
138777 TGATGCA
66 TGATGCA
138784 TTTTGTATTC
Statistics
Matches: 622, Mismatches: 169, Indels: 87
0.71 0.19 0.10
Matches are distributed among these distances:
123 1 0.00
124 30 0.05
125 99 0.16
126 62 0.10
127 201 0.32
128 75 0.12
129 147 0.24
130 6 0.01
131 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (129 bp):
ATAGATGCCTCGGTTTACTCGATGATGCATTATGTGTGCCAGTATAGATGCCTCGATTTACTCGA
TGATGCACTATGTGTGCCAGTATAGATGACTCGATTTACCCGATAATGCACTATGTATACCAGT
Found at i:138708 original size:84 final size:86
Alignment explanation
Indices: 137800--138783 Score: 381
Period size: 86 Copynumber: 11.6 Consensus size: 86
137790 TCGACTAACT
* * * * * * *
137800 CGATGATGCATTGTGTATCCCA-AATAGATGCC-TCAATTTACCCGATGATGCATTATGTGTACC
1 CGATGATGCATTATGTGTGCCAGTATAGATGCCGTCGATTTA-CCGATGATGCACTATGTGTGCC
* * * *
137863 AGGATAGATGCTTCGGTTTACT
65 AGTATAGATGCCTCGATTTACC
* * * * *
137885 CGATG-T--ACTCTGTCTGCCAGTATAGATGCC-CCGATTTACCCGATGATGCACCATGTGTGCC
1 CGATGATGCATTATGTGTGCCAGTATAGATGCCGTCGATTTA-CCGATGATGCACTATGTGTGCC
*
137946 TGTATAGATGCCTTCG-TTTACC
65 AGTATAGATGCC-TCGATTTACC
* * * * * ** *
137968 AGATGCTACATTGTATGCGT-TC-GTATAGATG--GTTCTTTTTTTACCCGATGATACA-T-TGT
1 CGATGATGCA-T-TATGTGTGCCAGTATAGATGCCG-TC--GATTTA-CCGATGATGCACTATGT
* * ** *
138027 GTACCCGTATAGATGGTTTCG-TGTACC
60 GTGCCAGTATAGAT-GCCTCGATTTACC
* * * * ** ** * *
138054 CGATGATGCACTGTGTGTACCCGTATAGATG-TTTTTATTTACCTAATGATGCACTGTGTGTGCC
1 CGATGATGCATTATGTGTGCCAGTATAGATGCCGTCGATTTACC-GATGATGCACTATGTGTGCC
* * **
138118 CGTATATATGTTTCTG-TTTACC
65 AGTATAGATGCCTC-GATTTACC
* *** * * *
138140 CGATGATGCATTATGT-T-CCCGTATAGATGGTTTCG-TTTACTCGATGAAGCTCTA--TGTACC
1 CGATGATGCATTATGTGTGCCAGTATAGATGCCGTCGATTTAC-CGATGATGCACTATGTGTGCC
* * *
138200 CGTATAGATGCTTTC-ATTTACT
65 AGTATAGATGC-CTCGATTTACC
* ** * * ** * * * * *
138222 CGATAACACATTGTGTGTGCGC-GTATAGATGCC-TCAATTTACTTAAGGGTACACTGTGTGTGT
1 CGATGATGCATTATGTGTGC-CAGTATAGATGCCGTCGATTTAC-CGATGATGCACTATGTGTGC
* * **
138285 CAATATAGGTGCCTCGATTTATT
64 CAGTATAGATGCCTCGATTTACC
* * * * * * *** * **
138308 CGTTGATGCATTGTGTGTGCCCGTATAGATGCC-TAGGTTTACTTGATGATGTGTTGTGTGTATC
1 CGATGATGCATTATGTGTGCCAGTATAGATGCCGTCGATTTAC-CGATGATGCACTATGTGTGCC
***
138372 -GATATAGATATATCGATTTACC
65 AG-TATAGATGCCTCGATTTACC
* ** * * *
138394 CGATGATGCATTATGTATGCTC-GTATAGATATC-T-TAGTTACTCGATGGTGCAC--TGTGTGC
1 CGATGATGCATTATGTGTGC-CAGTATAGATGCCGTCGATTTAC-CGATGATGCACTATGTGTGC
* * *
138454 CCGTATAGATGCTTCG-GTTACC
64 CAGTATAGATGCCTCGATTTACC
* * * *
138476 CGATGATCCATTATGTGTGCCAGTATAGAT-CCTTC-AGTTATCCGATGATACACTATGTGTGCC
1 CGATGATGCATTATGTGTGCCAGTATAGATGCCGTCGATTTA-CCGATGATGCACTATGTGTGCC
* * * *
138539 AGTATAGATACATTGGTTTACC
65 AGTATAGATGCCTCGATTTACC
* * * * * * *
138561 CGATAATGCACTGTGTATACCAGTATAAATG-CGTCGGTTTACTCGATGATGCACTATGTGTGCC
1 CGATGATGCATTATGTGTGCCAGTATAGATGCCGTCGATTTAC-CGATGATGCACTATGTGTGCC
*
138625 AGTATAGATGCCTCGATTTACT
65 AGTATAGATGCCTCGATTTACC
* * *
138647 CGATGATGTA-T-TGTGTGCCAGTATAGATGTC-TCGATTTACCGGATGATGTACTATGTGTGCC
1 CGATGATGCATTATGTGTGCCAGTATAGATGCCGTCGATTTACC-GATGATGCACTATGTGTGCC
* * * *
138709 AATATAGATGCCTCAATGTACT
65 AGTATAGATGCCTCGATTTACC
* * * * *
138731 TGATGATGGATTATGTTTGCCAGTATAGATGCC-TAGGTTTACCCGATGATGCA
1 CGATGATGCATTATGTGTGCCAGTATAGATGCCGTCGATTTA-CCGATGATGCA
138784 TTTTGTATTC
Statistics
Matches: 687, Mismatches: 163, Indels: 97
0.73 0.17 0.10
Matches are distributed among these distances:
81 2 0.00
82 86 0.13
83 79 0.11
84 157 0.23
85 67 0.10
86 272 0.40
87 5 0.01
88 19 0.03
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (86 bp):
CGATGATGCATTATGTGTGCCAGTATAGATGCCGTCGATTTACCGATGATGCACTATGTGTGCCA
GTATAGATGCCTCGATTTACC
Found at i:138815 original size:43 final size:43
Alignment explanation
Indices: 138768--138876 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 43
138758 GATGCCTAGG
* *
138768 TTTACCCGATGATGCATTTTGTAT-TCTCGTATAAATTATTTCA
1 TTTACCCGATGATGCATTGTGTATGTC-CGTATAAATGATTTCA
** * * *
138811 TTTACCATATGATGCATTGTGTGTGTCCGTATAGATGGTTTCA
1 TTTACCCGATGATGCATTGTGTATGTCCGTATAAATGATTTCA
* *
138854 TTTACCCGATAAGGCATTGTGTA
1 TTTACCCGATGATGCATTGTGTA
138877 CTCAAATAGT
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
43 51 0.96
44 2 0.04
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (43 bp):
TTTACCCGATGATGCATTGTGTATGTCCGTATAAATGATTTCA
Found at i:139194 original size:43 final size:43
Alignment explanation
Indices: 139125--141778 Score: 182
Period size: 43 Copynumber: 63.3 Consensus size: 43
139115 GATGACTCAC
*
139125 TGTGTGCCAGTATAGATGCTTCGATTTA-CTCGATGATGCACTG
1 TGTGTGCCAGTATAGATCCTTCGATTTACCT-GATGATGCACTG
* *
139168 TGTGTGTCAGTATCGATACCTT-GATTTACCTGATGATGCA-T-
1 TGTGTGCCAGTATAGAT-CCTTCGATTTACCTGATGATGCACTG
* ** * * ** *
139209 TATGTGTAAGTATATATCCCTCTG-TTTACCCAATGATGTA-T-
1 TGTGTGCCAGTATAGATCCTTC-GATTTACCTGATGATGCACTG
* * * * ** ** *
139250 TGTGTGTCGGTATAAATGCTTCCG-TTTATTTGATGATATA-AG
1 TGTGTGCCAGTATAGATCCTT-CGATTTACCTGATGATGCACTG
* * * *
139292 ATGTGTGTC-GATATTGATCCTTCAGTTTTATCC-GATTATGCAC--
1 -TGTGTGCCAG-TATAGATCCTTC-GATTTA-CCTGATGATGCACTG
* ** * * * * *
139335 TGTGTGCCAGTATATATATTTCGGTGTATCTGATGATACACTT
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* ** * * * *
139378 TGTGCGCCAGTATAGATGGTTTC-ATTTATCTGATGATACATTT
1 TGTGTGCCAGTATAGAT-CCTTCGATTTACCTGATGATGCACTG
* * * * * *
139421 TGTGTGTCAGTATAGATTCTTCCATTTATCTGATAATGCACTT
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * * *
139464 TGTGTGCTAGTATAGATGCTTCCG-TTTATCC-GATAATGCATTA
1 TGTGTGCCAGTATAGATCCTT-CGATTTA-CCTGATGATGCACTG
* * ** * * * *
139507 TGTGTGTCAGTATAAATGGTTCAATTTACCCGATGTTGTAC--
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * * * *
139548 TGTGTGCCAGTATAGATGCTTCGGTTAATCTGATGATGTACTA
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * ** * *
139591 TGTGCGCTAGCATAGATGTTTC-AGTTTA-TTCGATAATGCA-TAG
1 TGTGTGCCAGTATAGATCCTTCGA-TTTACCT-GATGATGCACT-G
* * * ** *
139634 TGTGTGCTAGTATAGATGCTTCAATTTATTTGAT-AGTGCATTG
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGA-TGCACTG
* * ** * * * * *
139677 AGTGTGCCCGTATAGATGTTTTGGTGTATCC-GATTATGTA-T-
1 TGTGTGCCAGTATAGATCCTTCGATTTA-CCTGATGATGCACTG
* * * *
139718 TGTGT--CAGTATAGTTGCTTCGATTTACCCGATGATGCACTC
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * * * * *
139759 TGTGTGCTAGCATAGATGCTTCGGTTTA-TTATATGGTGCAC--
1 TGTGTGCCAGTATAGATCCTTCGATTTACCT-GATGATGCACTG
* * * * * *
139800 --T-AGCCAGCATAGATGCTTCGGTTTA-TTAGATGATGTACTG
1 TGTGTGCCAGTATAGATCCTTCGATTTACCT-GATGATGCACTG
* * *
139840 TGT-T---AGTACT-GATGCTT-TAGTTT---T-TTCGATGCACTG
1 TGTGTGCCAGTA-TAGATCCTTCGA-TTTACCTGAT-GATGCACTG
* * * *
139876 TGTGTGCTAGTATAGAT-GTATCGGTTTATCC-GATGAAGCAC--
1 TGTGTGCCAGTATAGATCCT-TCGATTTA-CCTGATGATGCACTG
* * * * * * *
139917 TGTGTGCCAGTATGGATGCTTC-AGTT-CATTAGAT-AGTACATTA
1 TGTGTGCCAGTATAGATCCTTCGATTTAC-CT-GATGA-TGCACTG
* * * * * *
139960 TATGTGTCAGTATAGATGCTTCGGTTTACCCGATGTTGCAC--
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * * * *
140001 TGTGTACTAGTATAGATGCTTCGATTTCCCTAATGATGCATTG
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* ** * *
140044 TGTGTGTCAGTATAGATTTTTCGATTTA-TTGGATGAT--ACAG
1 TGTGTGCCAGTATAGATCCTTCGATTTACCT-GATGATGCACTG
* * ** *
140085 TGTGTGCCAGTATAGATACTTCAATTTATTTGATGATGCACCG
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * * * *
140128 T-TGTGCCAGTATAAATGCTT-AAGTTTA-TTCGATTATGCACTA
1 TGTGTGCCAGTATAGATCCTTCGA-TTTACCT-GATGATGCACTG
* * * * * * ** *
140170 TGTATGCTAGTATATATTCTTAGGTTTATTTGATGATACA-T-
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * * * * *
140211 TGTGTGTCAATATAAATGCTTC-AGTTTACCCGATCATGCACTA
1 TGTGTGCCAGTATAGATCCTTCGA-TTTACCTGATGATGCACTG
* * ** * * *
140254 TGTGTGTCAGTATATATGTTTCTATTTA-TTCGATTATGCACT-
1 TGTGTGCCAGTATAGATCCTTCGATTTACCT-GATGATGCACTG
*
140296 TAGTGTGCCAGTAT---T--TTCG-TTGTATCC-GATGTTGCA-TGG
1 T-GTGTGCCAGTATAGATCCTTCGATT-TA-CCTGATGATGCACT-G
* * ** * ** *
140335 TATGTGTCAGTATAGATGTTTCGGTGCATCTGATGATGCA-T-
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * * * *
140376 TGTGT--CAGTATAGATGCTTCAATTTACCCGATGATACAATT
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * ** * * * * *
140417 TATGTGCCAGTTTCGATTTTTTGGTTTA-TTCGATTATGCATTG
1 TGTGTGCCAGTATAGATCCTTCGATTTACCT-GATGATGCACTG
** * * * * *
140460 TGTGTTTCAATATTGATGCTTC-AGTTTATCT--T-ATGAACTG
1 TGTGTGCCAGTATAGATCCTTCGA-TTTACCTGATGATGCACTG
* * * * * * ***
140500 TGTGTGTCAATTTAGATGCTTCGATTTACCCGATGATGGAAAA
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * * ** *
140543 TGTGTGTCAGTATAGGTGCTTCGATTTATCC-AATGATGCTTTA
1 TGTGTGCCAGTATAGATCCTTCGATTTA-CCTGATGATGCACTG
* * * * * *
140586 TATGTGCCAGTATAAATGCTTCGATTTA-TTCGAAGATGCACTA
1 TGTGTGCCAGTATAGATCCTTCGATTTACCT-GATGATGCACTG
* * * *
140629 TGTGTACTAGTAT---T--TTC--TATATCTGATGATGCAC--
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * * *
140663 TATGTGCCAGTATAAATGCTTCGATTTA-CTCGAAGATGCACTA
1 TGTGTGCCAGTATAGATCCTTCGATTTACCT-GATGATGCACTG
* * * *
140706 TGTGTACTAGTAT---T--TTC--TATATCTGATGATGCAC--
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * ** * *
140740 TATGTACCAGTATAGATGTTTCGATGTATCTGATGATGCACAATG
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCAC--TG
* *
140785 TGTGT-CC-GTATAGATGCTTC-AGTTTATCTGATGATGCACTG
1 TGTGTGCCAGTATAGATCCTTCGA-TTTACCTGATGATGCACTG
* ** * * * ** *
140826 TGTTTGTTAGTATTGATGCTT-TAGTTTATTTGATGATGCACTA
1 TGTGTGCCAGTATAGATCCTTCGA-TTTACCTGATGATGCACTG
* * * ** * * *
140869 TGTGTACTAGTATA-AGTGCTTATATTTATCTAATGATGCATTG
1 TGTGTGCCAGTATAGA-TCCTTCGATTTACCTGATGATGCACTG
* * * ** * *
140912 TGTGTGTCAGTATAGGTGCTTCGATTTATTTGATGATGCGCTA
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * ** *
140955 TGTGTGCTAGTAT---T--TTCGGTTTATTTGATGATGCACGG
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * ** *
140993 TGTGTGTCAGTATAGATGCTTCTG-TTT-TTTAGATGATACGCTCTG
1 TGTGTGCCAGTATAGATCCTTC-GATTTACCT-GATGAT--GCACTG
* ** ** **
141038 TGGGTATCAGTATAGATGTTTTAATTTATCC----GATGCACTG
1 TGTGTGCCAGTATAGATCCTTCGATTTA-CCTGATGATGCACTG
* * * * *
141078 TATGGATGCCAGTATAGATTCTTTGATATATCC-GATGATGAACTG
1 TGT-G-TGCCAGTATAGATCCTTCGATTTA-CCTGATGATGCACTG
* * * * * * * * * *
141123 TATGTGCCAGTATAGTTACTTCGGTATA-ATCGATGACGTATTA
1 TGTGTGCCAGTATAGATCCTTCGATTTACCT-GATGATGCACTG
** * *
141166 T-TCGTGTCC-GTATAGATGATTCGATTTTCCCT-ATTATGCACTG
1 TGT-GTG-CCAGTATAGATCCTTCGA-TTTACCTGATGATGCACTG
* * * *
141209 TGTATGCCAGTATAGATACTTCAATTTACCTGATGATGCATTG
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * ** * * *
141252 TGTGTGCTAGAATAGATTATTCGGTTTATCTGATGATGTA-T-
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * ** * *
141293 TATGTGCTTCAATATAAATGTTTCTG-TTTA-CTCGTTGATGCACTA
1 TGTGTGC--CAGTATAGATCCTTC-GATTTACCT-GATGATGCACTG
* * * * * *
141338 TTTATGTCAGTATAGATGCTTCTG-TTTATCC-GATAATGCACTA
1 TGTGTGCCAGTATAGATCCTTC-GATTTA-CCTGATGATGCACTG
* * * *
141381 TGTGTGGCAATATAGATGCTTCGATTTATCC-GATGATGCACTA
1 TGTGTGCCAGTATAGATCCTTCGATTTA-CCTGATGATGCACTG
* * * * * *
141424 AGTGTGTCAGTATAGATGCTTCGATTTA-TTCGATGATGCATTA
1 TGTGTGCCAGTATAGATCCTTCGATTTACCT-GATGATGCACTG
* * * * * * **
141467 TTTATGTCTGTATAGATGCTTCGGTTTATTTGATGATGCAC--
1 TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
* * * * * ** * * *
141508 TATGTACTAGTACAGAT-GTTTTAGTGTA-TTCGATGATGCACTA
1 TGTGTGCCAGTATAGATCCTTCGA-TTTACCT-GATGATGCACTG
* * * * * *
141551 TGTTTGTCAGTATAGTTGCTTC-AGTTTATCTGATGATGCACTA
1 TGTGTGCCAGTATAGATCCTTCGA-TTTACCTGATGATGCACTG
* * ** * *
141594 TACGTGTGCTAGTATATATGATTCGATTTA-TTCGATGATACA-T-
1 T--GTGTGCCAGTATAGATCCTTCGATTTACCT-GATGATGCACTG
* * **
141637 TGTGTGCCAGTATAGATGCTTCAGTTTTTTC-GATGATGCACTG
1 TGTGTGCCAGTATAGATCCTTC-GATTTACCTGATGATGCACTG
** *
141680 TG-G-GCCAGTATAGA-CGCTTCGGCTTA-TTCGATGATGCACTG
1 TGTGTGCCAGTATAGATC-CTTCGATTTACCT-GATGATGCACTG
* * * *
141721 TGTGTGCTAGTATAGATGCTTC-ATTTTA-TTCGATGATGCATTG
1 TGTGTGCCAGTATAGATCCTTCGA-TTTACCT-GATGATGCACTG
* *
141764 TATGTGTCAGTATAG
1 TGTGTGCCAGTATAG
141779 CTGATTCGAT
Statistics
Matches: 1931, Mismatches: 480, Indels: 400
0.69 0.17 0.14
Matches are distributed among these distances:
34 21 0.01
35 1 0.00
36 35 0.02
37 10 0.01
38 94 0.05
39 70 0.04
40 70 0.04
41 353 0.18
42 120 0.06
43 1026 0.53
44 56 0.03
45 74 0.04
46 1 0.00
ACGTcount: A:0.23, C:0.14, G:0.22, T:0.41
Consensus pattern (43 bp):
TGTGTGCCAGTATAGATCCTTCGATTTACCTGATGATGCACTG
Found at i:139534 original size:86 final size:86
Alignment explanation
Indices: 139361--142171 Score: 444
Period size: 86 Copynumber: 33.4 Consensus size: 86
139351 TATTTCGGTG
* * * * * * * *
139361 TATCTGATGATACACTTTGTGCGCCAGTATAGATGGTTTCATTTATCTGATGATACATTTTGTGT
1 TATCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGTGT
* *
139426 GTCAGTATAGATTCTTCCATT
66 GTCAGTATAGATGCTTCAATT
* * *
139447 TATCTGATAATGCACTTTGTGTGCTAGTATAGATGCTTCCGTTTATCCGATAATGCATTATGTGT
1 TATCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGTGT
* *
139512 GTCAGTATAAATGGTTCAATT
66 GTCAGTATAGATGCTTCAATT
* * ** * * * * * *
139533 TACCCGATGTTGTAC--TGTGTGCCAGTATAGATGCTTCGGTTAATCTGATGATGTACTATGTGC
1 TATCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGTGT
* * *
139596 G-CTAGCATAGATGTTTCAGTT
66 GTC-AGTATAGATGCTTCAATT
* * ** *
139617 TAT-TCGATAATGCA-TAGTGTGTGCTAGTATAGATGCTTCAATTTATTTGAT-AGTGCATTGA-
1 TATCT-GATAATGCACT-TTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGA-TGCATT-AT
* * * *** *
139678 GTGTGCCCGTATAGATGTTTTGGTG
62 GTGTGTCAGTATAGATGCTTCAATT
* * * * * * * *
139703 TATCCGATTATGTA--TTGTGT--CAGTATAGTTGCTT-CGATTTACCCGATGATGCACTCTGTG
1 TATCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCG-TTTATCTGATGATGCATTATGTG
* **
139763 TG-CTAGCATAGATGCTTCGGTT
65 TGTC-AGTATAGATGCTTCAATT
* * * *
139785 TAT-T-ATATGGTGCAC----T-AGCCAGCATAGATGCTTCGGTTTAT-T-A-GATG-ATGTACT
1 TATCTGATA--ATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCAT-TA-T
* *
139839 GTGT-T-AGTACT-GATGCTTTAGTT
62 GTGTGTCAGTA-TAGATGCTTCAATT
* * * * * * *
139862 T-T-T--TCGATGCACTGTGTGTGCTAGTATAGATG-TATCGGTTTATCCGATGAAGCA--CTGT
1 TATCTGAT-AATGCACTTTGTGTGCCAGTATAGATGCT-TCCGTTTATCTGATGATGCATTATGT
* * *
139920 GTGCCAGTATGGATGCTTCAGTT
64 GTGTCAGTATAGATGCTTCAATT
* * * * * * * * * *
139943 CAT-TAGATAGTACA-TTATATGTGTCAGTATAGATGCTTCGGTTTACCCGATGTTGCA--CTGT
1 TATCT-GATAATGCACTT-TGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGT
* *
140004 GT-ACTAGTATAGATGCTTCGATT
64 GTGTC-AGTATAGATGCTTCAATT
** * * * * * * *
140027 TCCCTAATGATGCA-TTGTGTGTGTCAGTATAGAT-TTTTCGATTTAT-TGGATGATACA--GTG
1 TATCTGATAATGCACTT-TGTGTGCCAGTATAGATGCTTCCG-TTTATCT-GATGATGCATTATG
* *
140087 TGTGCCAGTATAGATACTTCAATT
63 TGTGTCAGTATAGATGCTTCAATT
* * ** * ** * * *
140111 TATTTGATGATGCACCGT-TGTGCCAGTATAAATGCTTAAGTTTAT-TCGATTATGCACTATGTA
1 TATCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCT-GATGATGCATTATGTG
* * *
140174 TG-CTAGTATATATTCTT-AGGTT
65 TGTC-AGTATAGATGCTTCA-ATT
* * * * * * * * * * *
140196 TATTTGATGAT--ACATTGTGTGTCAATATAAATGCTTCAGTTTACCCGATCATGCACTATGTGT
1 TATCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGTGT
* * *
140259 GTCAGTATATATGTTTCTATT
66 GTCAGTATAGATGCTTCAATT
* * * * ** *
140280 TAT-TCGATTATGCACTTAGTGTGCCAGTAT---T--TT-CGTTGTATCCGATGTTGCATGGTAT
1 TATCT-GATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTT-TATCTGATGATGCATTATGT
* ** *
140338 GTGTCAGTATAGATGTTTCGGTG
64 GTGTCAGTATAGATGCTTCAATT
* * ** * * * *
140361 CATCTGATGATGCA--TTGTGT--CAGTATAGATGCTTCAATTTACCCGATGATACAATT-TATG
1 TATCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGC-ATTATGTG
* * * ** ***
140421 TGCCAGTTTCGATTTTTTGGTT
65 TGTCAGTATAGATGCTTCAATT
* ** * * * * * *
140443 TAT-TCGATTATGCA-TTGTGTGTTTCAATATTGATGCTTCAGTTTATCT--T-ATGAACTGTGT
1 TATCT-GATAATGCACTT-TGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGT
* * *
140503 GTGTCAATTTAGATGCTTCGATT
64 GTGTCAGTATAGATGCTTCAATT
* * * * *** * * ** * *
140526 TACCCGATGATGGAAAATGTGTGTCAGTATAGGTGCTT-CGATTTATCCAATGATGCTTTATATG
1 TATCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCG-TTTATCTGATGATGCATTATGTG
* * *
140590 TGCCAGTATAAATGCTTCGATT
65 TGTCAGTATAGATGCTTCAATT
* * * * *
140612 TAT-TCGA-AGATGCACTATGTGTACTAGTAT---T--TT-C-TATATCTGATGATGCACTA--T
1 TATCT-GATA-ATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGT
* * *
140666 GTGCCAGTATAAATGCTTCGATT
64 GTGTCAGTATAGATGCTTCAATT
* * * * *
140689 TA-CTCGA-AGATGCACTATGTGTACTAGTAT---T--TT-C-TATATCTGATGATGCACTA--T
1 TATCT-GATA-ATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGT
** * * *
140743 GTACCAGTATAGATGTTTCGATG
64 GTGTCAGTATAGATGCTTCAATT
* ** * * * *
140766 TATCTGATGATGCACAATGTGTGTCC-GTATAGATGCTTCAGTTTATCTGATGATGCACTGTGTT
1 TATCTGATAATGCACTTTGTGTG-CCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGTG
* * * *
140830 TGTTAGTATTGATGCTTTAGTT
65 TGTCAGTATAGATGCTTCAATT
* * * * * *** * *
140852 TATTTGATGATGCACTATGTGTACTAGTATA-AGTGCTTATATTTATCTAATGATGCATTGTGTG
1 TATCTGATAATGCACTTTGTGTGCCAGTATAGA-TGCTTCCGTTTATCTGATGATGCATTATGTG
* *
140916 TGTCAGTATAGGTGCTTCGATT
65 TGTCAGTATAGATGCTTCAATT
* * * * * * * ***
140938 TATTTGATGATGCGCTATGTGTGCTAGTAT---T--TTCGGTTTATTTGATGATGCACGGTGTGT
1 TATCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGTGT
**
140998 GTCAGTATAGATGCTTCTGTT
66 GTCAGTATAGATGCTTCAATT
* * * * * ** * *** *
141019 T-TTTAGATGATACGCTCTGTGGGTATCAGTATAGATGTTTTAATTTATC---CGATGCACTGTA
1 TATCT-GAT-A-ATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCA-T-TA
* * ** *
141080 TG-GATGCCAGTATAGATTCTTTGATA
61 TGTG-TGTCAGTATAGATGCTTCAATT
* * * * * * * * * * *
141106 TATCCGATGATGAACTGTATGTGCCAGTATAGTTACTTCGGTATAATC-GATGACGTATTAT-TC
1 TATCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGT-TTATCTGATGATGCATTATGT-
* * *
141169 GTGTCCGTATAGATGATTCGATT
64 GTGTCAGTATAGATGCTTCAATT
* * * * ** * *
141192 T-TCCCT-ATTATGCACTGTGTATGCCAGTATAGATACTTCAATTTACCTGATGATGCATTGTGT
1 TAT--CTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGT
* ** **
141255 GTG-CTAGAATAGATTATTCGGTT
64 GTGTC-AGTATAGATGCTTCAATT
* * * * * * * * * *
141278 TATCTGATGATGTA-TTATGTGCT-TCAATATAAATGTTTCTGTTTA-CTCGTTGATGCACTATT
1 TATCTGATAATGCACTT-TGTG-TGCCAGTATAGATGCTTCCGTTTATCT-GATGATGCATTATG
* **
141340 TATGTCAGTATAGATGCTTCTGTT
63 TGTGTCAGTATAGATGCTTCAATT
* * * * * * *
141364 TATCCGATAATGCACTATGTGTGGCAATATAGATGCTT-CGATTTATCCGATGATGCACTAAGTG
1 TATCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCG-TTTATCTGATGATGCATTATGTG
*
141428 TGTCAGTATAGATGCTTCGATT
65 TGTCAGTATAGATGCTTCAATT
* * * * * * * *
141450 TAT-TCGATGATGCA-TTATTTATGTCTGTATAGATGCTTCGGTTTATTTGATGATGCACTATGT
1 TATCT-GATAATGCACTT-TGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGT
** * * * * *
141513 -ACT-AGTACAGATGTTTTAGTG
64 GTGTCAGTATAGATGCTTCAATT
* * * * * * *
141534 TAT-TCGATGATGCACTATGTTTGTCAGTATAGTTGCTTCAGTTTATCTGATGATGCACTATACG
1 TATCT-GATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCA-T-TATG
* * *
141598 TGTG-CTAGTATATATGATTCGATT
63 TGTGTC-AGTATAGATGCTTCAATT
* * * * *
141622 TAT-TCGATGAT--ACATTGTGTGCCAGTATAGATGCTTCAGTTT-TTTCGATGATGCA--CTGT
1 TATCT-GATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCT-GATGATGCATTATGT
* * * ***
141681 GGGCCAGTATAGACGCTTCGGCT
64 GTGTCAGTATAGATGCTTCAATT
* * * ** * *
141704 TAT-TCGATGATGCACTGTGTGTGCTAGTATAGATGCTTCATTTTAT-TCGATGATGCATTGTAT
1 TATCT-GATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCT-GATGATGCATTATGT
* * *
141767 GTGTCAGTATAGCTGATTCGATT
64 GTGTCAGTATAGATGCTTCAATT
* * * * * * * * * * *
141790 T-TTTCAATGAGGTACTATGTTTGCCAGTATAGATACTTCAGTATAT-TCGATGATGCACTATGT
1 TATCT-GATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCT-GATGATGCATTATGT
* * * *
141853 GAGCCAGTATAGATGGTTCATTT
64 GTGTCAGTATAGATGCTTCAATT
* * ** * * * * *
141876 TAT-TCGATGATGTA-TTGTGTAGATGTTAGTATATATGCCT-CGATTTATCCGGTGATGTATTA
1 TATCT-GATAATGCACTT-TGT-G-TGCCAGTATAGATGCTTCCG-TTTATCTGATGATGCATTA
* * ** *
141938 TGTGGGTGCCAGTATAAATGCTTCGGTA
61 TGT--GTGTCAGTATAGATGCTTCAATT
* * * * * ** * * **
141966 TAT-TCGATGATCCACTATATGTGCCAGTATAGTTATTTCGGTATAT-TCGATGATGCATTATCC
1 TATCT-GATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCT-GATGATGCATTATGT
* * *
142029 GTGTCAATATAGAGGCTTCGATT
64 GTGTCAGTATAGATGCTTCAATT
* * * * ** * * * *
142052 TAGTC-GATGATGCACTCTGTGT--TAGTATATATGCTTTGGTTTACCCGATGATGCACTGTGTG
1 TA-TCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGTG
* *
142114 TGCCAGTATAGATGCTTCAGTT
65 TGTCAGTATAGATGCTTCAATT
* * **
142136 TA-CTTGATGATACAC--TGTGTGTTAGTATAGATGCTT
1 TATC-TGATAATGCACTTTGTGTGCCAGTATAGATGCTT
142172 TGTGGGTGCC
Statistics
Matches: 2014, Mismatches: 545, Indels: 334
0.70 0.19 0.12
Matches are distributed among these distances:
74 5 0.00
75 1 0.00
76 2 0.00
77 137 0.07
78 11 0.01
79 50 0.02
80 12 0.01
81 125 0.06
82 136 0.07
83 113 0.06
84 443 0.22
85 84 0.04
86 737 0.37
87 37 0.02
88 87 0.04
89 2 0.00
90 31 0.02
91 1 0.00
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.40
Consensus pattern (86 bp):
TATCTGATAATGCACTTTGTGTGCCAGTATAGATGCTTCCGTTTATCTGATGATGCATTATGTGT
GTCAGTATAGATGCTTCAATT
Found at i:139600 original size:127 final size:127
Alignment explanation
Indices: 139421--139661 Score: 315
Period size: 127 Copynumber: 1.9 Consensus size: 127
139411 TGATACATTT
* * * * * *
139421 TGTGTGTCAGTATAGATTCTTCCATTTATCTGATAATGCACTTTGTGTGCTAGTATAGATGCTTC
1 TGTGTGCCAGTATAGATGCTTCCATTAATCTGATAATGCACTATGTGCGCTAGCATAGATGCTTC
* *
139486 CGTTTATCCGATAATGCATTA-TGTGTG-TCAGTATAAATGGTTCAATTTACCCGATGTTGTAC
66 AGTTTATCCGATAATGCA-TAGTGTGTGCT-AGTATAAATGCTTCAATTTACCCGATGTTGTAC
** * * *
139548 TGTGTGCCAGTATAGATGCTTCGGTTAATCTGATGATGTACTATGTGCGCTAGCATAGATGTTTC
1 TGTGTGCCAGTATAGATGCTTCCATTAATCTGATAATGCACTATGTGCGCTAGCATAGATGCTTC
* *
139613 AGTTTATTCGATAATGCATAGTGTGTGCTAGTATAGATGCTTCAATTTA
66 AGTTTATCCGATAATGCATAGTGTGTGCTAGTATAAATGCTTCAATTTA
139662 TTTGATAGTG
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
126 2 0.02
127 94 0.97
128 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.40
Consensus pattern (127 bp):
TGTGTGCCAGTATAGATGCTTCCATTAATCTGATAATGCACTATGTGCGCTAGCATAGATGCTTC
AGTTTATCCGATAATGCATAGTGTGTGCTAGTATAAATGCTTCAATTTACCCGATGTTGTAC
Found at i:139648 original size:213 final size:208
Alignment explanation
Indices: 139318--139784 Score: 492
Period size: 213 Copynumber: 2.2 Consensus size: 208
139308 ATCCTTCAGT
* * * ** *
139318 TTTATCCGATTATGCACTGTGTGCCAGTATATATATTTCGGTGTATCTGATGATACACTTTGTGC
1 TTTACCCGATGATGCACTGTGTGCCAGTATAGATGCTTCGGT-TATCTGATGATACACTATGTGC
* * ** * *
139383 GCCAGTATAGATGGTTTCATTTATCTGATGATACATTTTGTGTGTCAGTATAGATTCTTCCATTT
65 GCCAGCATAGATGGTTTCATTTATCTGATAATACATAGTGTGTGTCAGTATAGATGCTTCAATTT
* * *
139448 ATCTGATAATGCACTT-TGTGTGCTAGTATAGATGCTTCCGTTTATCCGATAATGCATTATGTGT
130 ATCTGATAATGCA-TTGAGTGTGCCAGTATAGATGCTTCCGTGTATCCGATAATG---TAT-TGT
*
139512 GTCAGTATAAATGGTTCAA
190 GTCAGTATAAATGCTTCAA
* * **
139531 TTTACCCGATGTTGTACTGTGTGCCAGTATAGATGCTTCGGTTAATCTGATGATGTACTATGTGC
1 TTTACCCGATGATGCACTGTGTGCCAGTATAGATGCTTCGGTT-ATCTGATGATACACTATGTGC
* *
139596 GCTAGCATAGAT-GTTTCAGTTTAT-TCGATAATGCATAGTGTGTG-CTAGTATAGATGCTTCAA
65 GCCAGCATAGATGGTTTCA-TTTATCT-GATAATACATAGTGTGTGTC-AGTATAGATGCTTCAA
* * * * ** *
139658 TTTATTTGATAGTGCATTGAGTGTGCCCGTATAGATGTTTTGGTGTATCCGATTATGTATTGTGT
127 TTTATCTGATAATGCATTGAGTGTGCCAGTATAGATGCTTCCGTGTATCCGATAATGTATTGTGT
** *
139723 CAGTATAGTTGCTTCGA
192 CAGTATAAATGCTTCAA
* *
139740 TTTACCCGATGATGCACTCTGTGTGCTAGCATAGATGCTTCGGTT
1 TTTACCCGATGATGCA--CTGTGTGCCAGTATAGATGCTTCGGTT
139785 TATTATATGG
Statistics
Matches: 211, Mismatches: 36, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
209 32 0.15
210 3 0.01
211 25 0.12
212 11 0.05
213 140 0.66
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.40
Consensus pattern (208 bp):
TTTACCCGATGATGCACTGTGTGCCAGTATAGATGCTTCGGTTATCTGATGATACACTATGTGCG
CCAGCATAGATGGTTTCATTTATCTGATAATACATAGTGTGTGTCAGTATAGATGCTTCAATTTA
TCTGATAATGCATTGAGTGTGCCAGTATAGATGCTTCCGTGTATCCGATAATGTATTGTGTCAGT
ATAAATGCTTCAA
Found at i:140050 original size:84 final size:84
Alignment explanation
Indices: 139867--140060 Score: 207
Period size: 84 Copynumber: 2.3 Consensus size: 84
139857 TAGTTTTTTC
* * * *
139867 GATGCACTGTGTGTG-CTAGTATAGATGTATCGGTTTATCCGATGAAGCACTGTGTGCCAGTATG
1 GATGCATTGTGTGTGTC-AGTATAGATGTATCGGTTTACCCGATGAAGCACTGTGTACCAGTATA
*
139931 GATGCTTCAGTTCATTAGAT
65 GATGCTTCAGTTCACTAGAT
* * * ** *
139951 -AGTACATTATATGTGTCAGTATAGATGCT-TCGGTTTACCCGATGTTGCACTGTGTACTAGTAT
1 GA-TGCATTGTGTGTGTCAGTATAGATG-TATCGGTTTACCCGATGAAGCACTGTGTACCAGTAT
* *
140014 AGATGCTTCGATTTCCCTA-AT
64 AGATGCTTC-AGTTCACTAGAT
140035 GATGCATTGTGTGTGTCAGTATAGAT
1 GATGCATTGTGTGTGTCAGTATAGAT
140061 TTTTCGATTT
Statistics
Matches: 89, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
83 1 0.01
84 79 0.89
85 9 0.10
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.37
Consensus pattern (84 bp):
GATGCATTGTGTGTGTCAGTATAGATGTATCGGTTTACCCGATGAAGCACTGTGTACCAGTATAG
ATGCTTCAGTTCACTAGAT
Found at i:140155 original size:42 final size:42
Alignment explanation
Indices: 140068--140238 Score: 132
Period size: 41 Copynumber: 4.1 Consensus size: 42
140058 GATTTTTCGA
* * * * *
140068 TTTATTGGATGATACAGTG-TGTGCCAGTATAGATACTTCAA-
1 TTTATTTGATGATGCACTGTTGTGCCAGTATAAATGCTT-AAG
*
140109 TTTATTTGATGATGCACCGTTGTGCCAGTATAAATGCTTAAG
1 TTTATTTGATGATGCACTGTTGTGCCAGTATAAATGCTTAAG
* * * * * * * *
140151 TTTATTCGATTATGCACTATGTATGCTAGTATATATTCTTAGG
1 TTTATTTGATGATGCACTGT-TGTGCCAGTATAAATGCTTAAG
* * * * *
140194 TTTATTTGATGATACATTG-TGTGTCAATATAAATGCTTCAG
1 TTTATTTGATGATGCACTGTTGTGCCAGTATAAATGCTTAAG
140235 TTTA
1 TTTA
140239 CCCGATCATG
Statistics
Matches: 99, Mismatches: 28, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
41 35 0.35
42 33 0.33
43 31 0.31
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (42 bp):
TTTATTTGATGATGCACTGTTGTGCCAGTATAAATGCTTAAG
Found at i:140250 original size:84 final size:85
Alignment explanation
Indices: 140109--140270 Score: 211
Period size: 84 Copynumber: 1.9 Consensus size: 85
140099 GATACTTCAA
* * ** *
140109 TTTATTTGATGATGCACCGTTGTGCCAGTATAAATGCTTAAGTTTATTCGATTATGCACTATGTA
1 TTTATTTGATGATACACCGTTGTGCCAATATAAATGCTTAAGTTTACCCGATCATGCACTATGTA
140174 TG-CTAGTATATATTCTTAGG
66 TGTC-AGTATATATTCTTAGG
** * * *
140194 TTTATTTGATGATACATTG-TGTGTCAATATAAATGCTTCAGTTTACCCGATCATGCACTATGTG
1 TTTATTTGATGATACACCGTTGTGCCAATATAAATGCTTAAGTTTACCCGATCATGCACTATGTA
140258 TGTCAGTATATAT
66 TGTCAGTATATAT
140271 GTTTCTATTT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
84 49 0.74
85 17 0.26
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.42
Consensus pattern (85 bp):
TTTATTTGATGATACACCGTTGTGCCAATATAAATGCTTAAGTTTACCCGATCATGCACTATGTA
TGTCAGTATATATTCTTAGG
Found at i:140250 original size:126 final size:127
Alignment explanation
Indices: 140068--140295 Score: 280
Period size: 126 Copynumber: 1.8 Consensus size: 127
140058 GATTTTTCGA
* * *** * *
140068 TTTATTGGATGATACAGTGTGTGCCAGTATAGATACTTCAATTTATTTGATGATGCACCGT-TGT
1 TTTATTGGATGATACAGTGTGTGCCAATATAAATACTTCAATTTACCCGATCATGCACCATGTGT
140132 GCCAGTATAAATGCTT-AAGTTTATTCGATTATGCACTATGTATGCTAGTATATATTCTTAGG
66 GCCAGTATAAATGCTTCAA-TTTATTCGATTATGCACTATGTATGCTAGTATATATTCTTAGG
* * * * * *
140194 TTTATTTGATGATACATTGTGTGTCAATATAAATGCTTCAGTTTACCCGATCATGCACTATGTGT
1 TTTATTGGATGATACAGTGTGTGCCAATATAAATACTTCAATTTACCCGATCATGCACCATGTGT
* * * *
140259 GTCAGTATATATGTTTCTATTTATTCGATTATGCACT
66 GCCAGTATAAATGCTTCAATTTATTCGATTATGCACT
140296 TAGTGTGCCA
Statistics
Matches: 83, Mismatches: 17, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
126 48 0.58
127 34 0.41
128 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (127 bp):
TTTATTGGATGATACAGTGTGTGCCAATATAAATACTTCAATTTACCCGATCATGCACCATGTGT
GCCAGTATAAATGCTTCAATTTATTCGATTATGCACTATGTATGCTAGTATATATTCTTAGG
Found at i:140282 original size:84 final size:83
Alignment explanation
Indices: 140085--140283 Score: 195
Period size: 84 Copynumber: 2.3 Consensus size: 83
140075 GATGATACAG
* * * * *
140085 TGTGTGCCAGTATAGATACTTCAATTTATTTGATGATGCACCGTTGTGCCAGTATAAATGCTTAA
1 TGTGTG-CAGTATATAT-TTTCTATTTATTTGATGATACACCGTTGTGCCAATATAAATGCTTAA
** *
140150 GTTTATTCGATTATGCACTA
64 GTTTACCCGATCATGCACTA
* * ** * *
140170 TGTATGCTAGTATATATTCT-TAGGTTTATTTGATGATACATTG-TGTGTCAATATAAATGCTTC
1 TGTGTGC-AGTATATATTTTCTA--TTTATTTGATGATACACCGTTGTGCCAATATAAATGCTTA
140233 AGTTTACCCGATCATGCACTA
63 AGTTTACCCGATCATGCACTA
140254 TGTGTGTCAGTATATATGTTTCTATTTATT
1 TGTGTG-CAGTATATAT-TTTCTATTTATT
140284 CGATTATGCA
Statistics
Matches: 92, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
83 1 0.01
84 57 0.62
85 32 0.35
86 2 0.02
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.43
Consensus pattern (83 bp):
TGTGTGCAGTATATATTTTCTATTTATTTGATGATACACCGTTGTGCCAATATAAATGCTTAAGT
TTACCCGATCATGCACTA
Found at i:140667 original size:36 final size:36
Alignment explanation
Indices: 140620--140744 Score: 137
Period size: 36 Copynumber: 3.3 Consensus size: 36
140610 TTTATTCGAA
140620 GATGCACTATGTGTACTAGTATTTTCTATATCTGAT
1 GATGCACTATGTGTACTAGTATTTTCTATATCTGAT
* * * *
140656 GATGCACTATGTG--CCAGTATAAATGCTTCGATTTACTCGAA
1 GATGCACTATGTGTACTAGTAT---T--TTCTATAT-CT-GAT
140697 GATGCACTATGTGTACTAGTATTTTCTATATCTGAT
1 GATGCACTATGTGTACTAGTATTTTCTATATCTGAT
140733 GATGCACTATGT
1 GATGCACTATGT
140745 ACCAGTATAG
Statistics
Matches: 72, Mismatches: 8, Indels: 18
0.73 0.08 0.18
Matches are distributed among these distances:
34 6 0.08
36 27 0.38
37 3 0.04
38 6 0.08
39 6 0.08
40 3 0.04
41 15 0.21
43 6 0.08
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39
Consensus pattern (36 bp):
GATGCACTATGTGTACTAGTATTTTCTATATCTGAT
Found at i:140713 original size:77 final size:76
Alignment explanation
Indices: 140586--140787 Score: 323
Period size: 77 Copynumber: 2.6 Consensus size: 76
140576 TGATGCTTTA
140586 TATGTGCCAGTATAAATGCTTCGATTTATTCGAAGATGCACTATGTGTACTAGTATTTTCTATAT
1 TATGTGCCAGTATAAATGCTTCGATTTA-TCGAAGATGCACTATGTGTACTAGTATTTTCTATAT
140651 CTGATGATGCAC
65 CTGATGATGCAC
140663 TATGTGCCAGTATAAATGCTTCGATTTACTCGAAGATGCACTATGTGTACTAGTATTTTCTATAT
1 TATGTGCCAGTATAAATGCTTCGATTTA-TCGAAGATGCACTATGTGTACTAGTATTTTCTATAT
140728 CTGATGATGCAC
65 CTGATGATGCAC
* * * * * *
140740 TATGTACCAGTATAGATGTTTCGATGTATCTGATGATGCACAATGTGT
1 TATGTGCCAGTATAAATGCTTCGATTTATC-GAAGATGCACTATGTGT
140788 GTCCGTATAG
Statistics
Matches: 117, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
76 2 0.02
77 115 0.98
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.38
Consensus pattern (76 bp):
TATGTGCCAGTATAAATGCTTCGATTTATCGAAGATGCACTATGTGTACTAGTATTTTCTATATC
TGATGATGCAC
Found at i:141652 original size:170 final size:169
Alignment explanation
Indices: 141201--141887 Score: 502
Period size: 170 Copynumber: 4.0 Consensus size: 169
141191 TTTCCCTATT
* * * * * * * *
141201 ATGCACTGTGTATGCCAGTATAGATACTTCAATTTACCTGATGATGCATTGT-GTGTGCTAGAAT
1 ATGCACTATGTGTG-CAGTATAGATGCTTCAGTTTATCTGATGATGCACTATAGTGTGCTAGTAT
* * ** * * * * * *
141265 AGATTATTCGGTTTA-TCTGATGATGTATTATG--TGCTTCAATATAAATGTTTCTGTTTACTCG
65 AGATGATTCGATTTATTC-GATGATACA-TATGTATGC--CAGTATAGATGCTTCAGTTTATTTG
* * * * * * * * *
141327 TTGATGCACTATTTATGTCAGTATAGATGCTTCTGTTTATCCGATA
126 ATGATGCACTATGTA--CCAGTACAGACGCTTCAGCTTATTCGATG
* *
141373 ATGCACTATGTGTGGCAATATAGATGCTTC-GATTTATCCGATGATGCACTA-AGTGTG-TCAGT
1 ATGCACTATGTGT-GCAGTATAGATGCTTCAG-TTTATCTGATGATGCACTATAGTGTGCT-AGT
* * * * * *
141435 ATAGATGCTTCGATTTATTCGATGATGCATTATTTATGTCTGTATAGATGCTTCGGTTTATTTGA
63 ATAGATGATTCGATTTATTCGATGATACA-TATGTATGCCAGTATAGATGCTTCAGTTTATTTGA
* * * *
141500 TGATGCACTATGTACTAGTACAGATGTTTTAG-TGTATTCGATG
127 TGATGCACTATGTACCAGTACAGACGCTTCAGCT-TATTCGATG
* *
141543 ATGCACTATGTTTGTCAGTATAGTTGCTTCAGTTTATCTGATGATGCACTATACGTGTGCTAGTA
1 ATGCACTATGTGTG-CAGTATAGATGCTTCAGTTTATCTGATGATGCACTATA-GTGTGCTAGTA
* *
141608 TATATGATTCGATTTATTCGATGATACAT-TGTGTGCCAGTATAGATGCTTCAGTTT-TTTCGAT
64 TAGATGATTCGATTTATTCGATGATACATATGTATGCCAGTATAGATGCTTCAGTTTATTT-GAT
* ** * *
141671 GATGCACTGTGGGCCAGTATAGACGCTTCGGCTTATTCGATG
128 GATGCACTATGTACCAGTACAGACGCTTCAGCTTATTCGATG
* * * *
141713 ATGCACTGTGTGTGCTAGTATAGATGCTTCATTTTAT-TCGATGATGCATTGTA-TGTG-TCAGT
1 ATGCACTATGTGTGC-AGTATAGATGCTTCAGTTTATCT-GATGATGCACTATAGTGTGCT-AGT
* * * * * * *
141775 ATAGCTGATTCGATTTTTTCAATGAGGTAC-TATGTTTGCCAGTATAGATACTTCAGTATATTCG
63 ATAGATGATTCGATTTATTCGATGA--TACATATGTATGCCAGTATAGATGCTTCAGTTTATTTG
* * * **
141839 ATGATGCACTATGTGAGCCAGTATAGATGGTTCATTTTATTCGATG
126 ATGATGCACTATGT-A-CCAGTACAGACGCTTCAGCTTATTCGATG
141885 ATG
1 ATG
141888 TATTGTGTAG
Statistics
Matches: 415, Mismatches: 76, Indels: 48
0.77 0.14 0.09
Matches are distributed among these distances:
167 1 0.00
168 28 0.07
169 8 0.02
170 201 0.48
171 7 0.02
172 164 0.40
173 4 0.01
174 2 0.00
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.40
Consensus pattern (169 bp):
ATGCACTATGTGTGCAGTATAGATGCTTCAGTTTATCTGATGATGCACTATAGTGTGCTAGTATA
GATGATTCGATTTATTCGATGATACATATGTATGCCAGTATAGATGCTTCAGTTTATTTGATGAT
GCACTATGTACCAGTACAGACGCTTCAGCTTATTCGATG
Found at i:141753 original size:213 final size:213
Alignment explanation
Indices: 141318--141887 Score: 509
Period size: 213 Copynumber: 2.7 Consensus size: 213
141308 AAATGTTTCT
* * *
141318 GTTTACTCGTTGATGCACTAT-TTATGTCAGTATAGATGCTTCTGTTTATCCGATAATGCACTAT
1 GTTTATTCGATGATGCACTATGTTATGTCAGTATAGATGCTTCAGTTTATCCGATAATGCACTAT
* * *
141382 GTGTGGCAATATAGATGCTTCGATTTATCCGATGATGCACTAAGTGTGTCAGTATAGATGCTTCG
66 GTGTGGCAATATAGATGATTCGATTTATCCGATGATACACTAAGTGTGCCAGTATAGATGCTTCG
* * * * * * *
141447 ATTTATTCGATGATGCATTATTTATGTCTGTATAGATGCTTCGGTTTATTTGATGATGCACTATG
131 ATTTATTCGATGATGCA-TATGTAGGCCAGTATAGACGCTTCGGCTTATTCGATGATGCACTATG
* *
141512 TACTAGTACAGATGTTTTA
195 TACTAGTACAGATGCTTCA
* * * *
141531 GTGTATTCGATGATGCACTATGTT-TGTCAGTATAGTTGCTTCAGTTTATCTGATGATGCACTAT
1 GTTTATTCGATGATGCACTATGTTATGTCAGTATAGATGCTTCAGTTTATCCGATAATGCACTAT
* * * *
141595 ACGTGT-GCTAGTATATATGATTCGATTTATTCGATGATACA-T-TGTGTGCCAGTATAGATGCT
66 --GTGTGGC-AATATAGATGATTCGATTTATCCGATGATACACTAAGTGTGCCAGTATAGATGCT
* * *
141657 TC-AGTTTTTTCGATGATGCA-CTGTGGGCCAGTATAGACGCTTCGGCTTATTCGATGATGCACT
128 TCGA-TTTATTCGATGATGCATATGTAGGCCAGTATAGACGCTTCGGCTTATTCGATGATGCAC-
* * *
141720 GTGTGTGCTAGTATAGATGCTTCA
191 -TATGTACTAGTACAGATGCTTCA
* * * * * * * * * *
141744 TTTTATTCGATGATGCA-T-TGTATGTGTCAGTATAGCTGATTC-GATTTTTTCAATGAGGTACT
1 GTTTATTCGATGATGCACTATGT-TATGTCAGTATAGATGCTTCAG-TTTATCCGATAATGCACT
* * * * * * * * *
141806 ATGTTTGCCAGTATAGAT-ACTTC-AGTATATTCGATGATGCACTATGTGAGCCAGTATAGATGG
64 ATGTGTGGCAATATAGATGA-TTCGA-TTTATCCGATGATACACTAAGTGTGCCAGTATAGATGC
141869 TTC-ATTTTATTCGATGATG
127 TTCGA-TTTATTCGATGATG
141888 TATTGTGTAG
Statistics
Matches: 294, Mismatches: 48, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
210 2 0.01
211 64 0.22
212 6 0.02
213 186 0.63
214 5 0.02
215 31 0.11
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.40
Consensus pattern (213 bp):
GTTTATTCGATGATGCACTATGTTATGTCAGTATAGATGCTTCAGTTTATCCGATAATGCACTAT
GTGTGGCAATATAGATGATTCGATTTATCCGATGATACACTAAGTGTGCCAGTATAGATGCTTCG
ATTTATTCGATGATGCATATGTAGGCCAGTATAGACGCTTCGGCTTATTCGATGATGCACTATGT
ACTAGTACAGATGCTTCA
Found at i:141850 original size:43 final size:43
Alignment explanation
Indices: 140730--142171 Score: 697
Period size: 43 Copynumber: 33.8 Consensus size: 43
140720 TTCTATATCT
* * *
140730 GATGATGCACTA--TGTACCAGTATAGATGTTTC-GATGTA-TC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAG-TTTATTC
*
140770 TGATGATGCACAATGTGTGTCC-GTATAGATGCTTCAGTTTA-TC
1 -GATGATGCACTATGTGTG-CCAGTATAGATGCTTCAGTTTATTC
* * ** * * *
140813 TGATGATGCACTGTGTTTGTTAGTATTGATGCTTTAGTTTATTT
1 -GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * *
140857 GATGATGCACTATGTGTACTAGTATA-AGTGCTT-ATATTTA-TC
1 GATGATGCACTATGTGTGCCAGTATAGA-TGCTTCA-GTTTATTC
* * * * * *
140899 TAATGATGCATTGTGTGTGTCAGTATAGGTGCTTC-GATTTATTT
1 -GATGATGCACTATGTGTGCCAGTATAGATGCTTCAG-TTTATTC
* * * *
140943 GATGATGCGCTATGTGTGCTAGTAT---T--TTCGGTTTATTT
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
** * * * *
140981 GATGATGCACGGTGTGTGTCAGTATAGATGCTTCTGTTTTTTA
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * * ** * * *
141024 GATGATACGCTCTGTGGGTATCAGTATAGATGTTTTAATTTA-TC
1 GATGAT--GCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * * * *
141068 --CGATGCACTGTATG-GATGCCAGTATAGATTCTT-TGATATATCC
1 GATGATGCAC--TATGTG-TGCCAGTATAGATGCTTCAG-TTTATTC
* * * * * * * *
141111 GATGATGAACTGTATGTGCCAGTATAGTTACTTCGGTATAATC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * * * *
141154 GATGACGTATTAT-TCGTGTCC-GTATAGATGATTC-GATTT-TCCC
1 GATGATGCACTATGT-GTG-CCAGTATAGATGCTTCAG-TTTAT-TC
* * * * * * *
141197 TATTATGCACTGTGTATGCCAGTATAGATACTTCAATTTA-CC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * * * ** *
141239 TGATGATGCATTGTGTGTGCTAGAATAGATTATTCGGTTTA-TC
1 -GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * * * * * * *
141282 TGATGATGTATTATGTGCT-TCAATATAAATGTTTCTGTTTACTC
1 -GATGATGCACTATGTG-TGCCAGTATAGATGCTTCAGTTTATTC
* * * * * *
141326 GTTGATGCACTATTTATGTCAGTATAGATGCTTCTGTTTATCC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * * *
141369 GATAATGCACTATGTGTGGCAATATAGATGCTTC-GATTTATCC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAG-TTTATTC
* *
141412 GATGATGCACTAAGTGTGTCAGTATAGATGCTTC-GATTTATTC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAG-TTTATTC
* * * * * * *
141455 GATGATGCATTATTTATGTCTGTATAGATGCTTCGGTTTATTT
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * * * * *
141498 GATGATGCACTA--TGTACTAGTACAGATGTTTTAGTGTATTC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * *
141539 GATGATGCACTATGTTTGTCAGTATAGTTGCTTCAGTTTA-TC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * *
141581 TGATGATGCACTATACGTGTGCTAGTATATATGATTC-GATTTATTC
1 -GATGATGCACTAT--GTGTGCCAGTATAGATGCTTCAG-TTTATTC
* *
141627 GATGATACA-T-TGTGTGCCAGTATAGATGCTTCAGTTTTTTC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * * *
141668 GATGATGCAC--TGTGGGCCAGTATAGACGCTTCGGCTTATTC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * *
141709 GATGATGCACTGTGTGTGCTAGTATAGATGCTTCATTTTATTC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * * * * * *
141752 GATGATGCATTGTATGTGTCAGTATAGCTGATTC-GATTTTTTC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAG-TTTATTC
* * * * * *
141795 AATGAGGTACTATGTTTGCCAGTATAGATACTTCAGTATATTC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * *
141838 GATGATGCACTATGTGAGCCAGTATAGATGGTTCATTTTATTC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* * * ** * * *
141881 GATGATGTATTGTGTAGATGTTAGTATATATGCCTC-GATTTATCC
1 GATGATGCACTATGT-G-TGCCAGTATAGATGCTTCAG-TTTATTC
* * * * * *
141926 GGTGATGTATTATGTGGGTGCCAGTATAAATGCTTCGGTATATTC
1 GATGATGCACTATGT--GTGCCAGTATAGATGCTTCAGTTTATTC
* * * ** * *
141971 GATGATCCACTATATGTGCCAGTATAGTTATTTCGGTATATTC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
* ** * * * *
142014 GATGATGCATTATCCGTGTCAATATAGAGGCTTC-GATTTAGTC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAG-TTTATTC
* * * ** **
142057 GATGATGCACTCTGTGT--TAGTATATATGCTTTGGTTTACCC
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
*
142098 GATGATGCACTGTGTGTGCCAGTATAGATGCTTCAGTTTACTT-
1 GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTA-TTC
* **
142141 GATGATACAC--TGTGTGTTAGTATAGATGCTT
1 GATGATGCACTATGTGTGCCAGTATAGATGCTT
142172 TGTGGGTGCC
Statistics
Matches: 1058, Mismatches: 276, Indels: 134
0.72 0.19 0.09
Matches are distributed among these distances:
38 30 0.03
39 1 0.00
40 4 0.00
41 161 0.15
42 38 0.04
43 683 0.65
44 19 0.02
45 118 0.11
46 4 0.00
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.40
Consensus pattern (43 bp):
GATGATGCACTATGTGTGCCAGTATAGATGCTTCAGTTTATTC
Found at i:142188 original size:64 final size:65
Alignment explanation
Indices: 142108--142239 Score: 169
Period size: 64 Copynumber: 2.0 Consensus size: 65
142098 GATGATGCAC
* * * * * *
142108 TGTGTGTGCCAGTATAGATGCTTCAGTTTA-CTTGATGATACAC-TGTGTGTTAGTATAGATGCT
1 TGTGGGTGCCAATATAGATGCTTCAGTATATC-CGACGATACACATGTGTGATAGTATAGATGCT
142171 T
65 T
*
142172 TGTGGGTGCCAATATAGATGCTTCGGTATATCCGACGATACACAGTGTGTGATAGTATAGATGCT
1 TGTGGGTGCCAATATAGATGCTTCAGTATATCCGACGATACACA-TGTGTGATAGTATAGATGCT
142237 T
65 T
142238 TG
1 TG
142240 GTTTATTCGA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
64 35 0.60
65 1 0.02
66 22 0.38
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (65 bp):
TGTGGGTGCCAATATAGATGCTTCAGTATATCCGACGATACACATGTGTGATAGTATAGATGCTT
Found at i:142222 original size:107 final size:109
Alignment explanation
Indices: 142077--142280 Score: 270
Period size: 107 Copynumber: 1.9 Consensus size: 109
142067 TCTGTGTTAG
* * * * * * *
142077 TATATATGCTTTGGTTTACCCGATGATGCACTGTGTGTGCCAGTATAGATGCTTCAGTTTACTT-
1 TATAGATGCTTCGGTATACCCGACGATACACAGTGTGTGACAGTATAGATGCTTCAGTTTA-TTC
142141 GATGATACACTGTGTGT-T-AGTATAGATGCTTTGTGGGTGCCAA
65 GATGATACACTGTGTGTGTCAGTATAGATGCTTTGTGGGTGCCAA
* * **
142184 TATAGATGCTTCGGTATATCCGACGATACACAGTGTGTGATAGTATAGATGCTTTGGTTTATTCG
1 TATAGATGCTTCGGTATACCCGACGATACACAGTGTGTGACAGTATAGATGCTTCAGTTTATTCG
*
142249 ATGATGCACTGTGTGTGTCAGTATAGATGCTT
66 ATGATACACTGTGTGTGTCAGTATAGATGCTT
142281 CGATTTATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
106 2 0.02
107 66 0.80
108 1 0.01
109 13 0.16
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.38
Consensus pattern (109 bp):
TATAGATGCTTCGGTATACCCGACGATACACAGTGTGTGACAGTATAGATGCTTCAGTTTATTCG
ATGATACACTGTGTGTGTCAGTATAGATGCTTTGTGGGTGCCAA
Found at i:142263 original size:43 final size:43
Alignment explanation
Indices: 142184--142497 Score: 182
Period size: 43 Copynumber: 7.3 Consensus size: 43
142174 TGGGTGCCAA
* * * * * *
142184 TATAGATGCTTCGGTATATCCGACGATACACAGTGTGTGATAG
1 TATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGATAG
142227 TATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTG-TCAG
1 TATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGAT-AG
* * *
142270 TATAGATGCTTCGATTTATAT-GATGATGCACTGTATGTGATAG
1 TATAGATGCTTTGGTTTAT-TCGATGATGCACTGTGTGTGATAG
* * * * * * * *
142313 TAT-GAATGTTTTAGTGTATTCAATGATGCATTATATATGCA-AG
1 TATAG-ATGCTTTGGTTTATTCGATGATGCACTGTGTGTG-ATAG
* * * * * * *
142356 TATAGATGTTTTGGTGTA-TCTGATGATTCACTATATGT-ACCAA
1 TATAGATGCTTTGGTTTATTC-GATGATGCACTGTGTGTGA-TAG
* ** *
142399 TAT-GAATG-TTTCGGTTTA-TCAGATGATACACTACGTGT-ACCAG
1 TATAG-ATGCTTT-GGTTTATTC-GATGATGCACTGTGTGTGA-TAG
* *
142442 TATAGATGCTTCT-GTTTATCCGATGATGCACTGTGTGTGCTAG
1 TATAGATGCTT-TGGTTTATTCGATGATGCACTGTGTGTGATAG
142485 TATAGATGCTTTG
1 TATAGATGCTTTG
142498 TGGGTGTCAG
Statistics
Matches: 217, Mismatches: 36, Indels: 36
0.75 0.12 0.12
Matches are distributed among these distances:
41 1 0.00
42 10 0.05
43 197 0.91
44 8 0.04
45 1 0.00
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.39
Consensus pattern (43 bp):
TATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGATAG
Found at i:142313 original size:86 final size:84
Alignment explanation
Indices: 142184--142497 Score: 233
Period size: 86 Copynumber: 3.7 Consensus size: 84
142174 TGGGTGCCAA
* * * * * *
142184 TATAGATGCTTCGGTATATCCGACGATACACAGTGTGTGATAGTAT-AGATGCTTTGGTTTATTC
1 TATAGATGCTTC-GTTTATCTGATGATGCACTGTATGTGATAGTATGA-ATGCTTTGGTTTATTC
*
142248 GATGATGCACTGTGTGTGTCAG
64 GATGATGCACTATGTGTG-CAG
* * * * *
142270 TATAGATGCTTCGATTTATATGATGATGCACTGTATGTGATAGTATGAATGTTTTAGTGTATTCA
1 TATAGATGCTTCG-TTTATCTGATGATGCACTGTATGTGATAGTATGAATGCTTTGGTTTATTCG
* * *
142335 ATGATGCATTATATATGCAAG
65 ATGATGCACTATGTGTGC-AG
* * * * * * *
142356 TATAGATGTTTTGGTGTATCTGATGATTCACTATATGT-ACCAATATGAATG-TTTCGGTTTA-T
1 TATAGATG-CTTCGTTTATCTGATGATGCACTGTATGTGA-TAGTATGAATGCTTT-GGTTTATT
* * *
142418 CAGATGATACACTACGTGTACCAG
63 C-GATGATGCACTATGTGT-GCAG
* * *
142442 TATAGATGCTTCTGTTTATCCGATGATGCACTGTGTGTGCTAGTAT-AGATGCTTTG
1 TATAGATGCTTC-GTTTATCTGATGATGCACTGTATGTGATAGTATGA-ATGCTTTG
142498 TGGGTGTCAG
Statistics
Matches: 174, Mismatches: 42, Indels: 24
0.73 0.17 0.10
Matches are distributed among these distances:
85 11 0.06
86 155 0.89
87 8 0.05
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.39
Consensus pattern (84 bp):
TATAGATGCTTCGTTTATCTGATGATGCACTGTATGTGATAGTATGAATGCTTTGGTTTATTCGA
TGATGCACTATGTGTGCAG
Found at i:142558 original size:43 final size:42
Alignment explanation
Indices: 142496--144176 Score: 968
Period size: 43 Copynumber: 39.5 Consensus size: 42
142486 ATAGATGCTT
* * * * *
142496 TGTGGGTGTCAGTATAGATGCTCTGGTATATCCGATAATACAC
1 TGTGTGTGCCAGTATAGATGCT-TGGTTTATCCGATGATGCAC
* *
142539 TGTGTGTGCCAGTGTAGATGCTTCGGTTTATTCGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* ** ** **
142582 TATGTGTGTTAGTATAGATGCTTTGGTTTATTTGATGATGCGT
1 TGTGTGTGCCAGTATAGATGC-TTGGTTTATCCGATGATGCAC
* * * *
142625 TGTGTTTGCCAGTATAGATGTTTCGATGTATCCGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* *
142668 TTTGTGTGCCAGTATAGATGCTTTGTTTATCCGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCTTGGTTTATCCGATGATGCAC
* * * * * *
142710 TATGTGTGTCAGTAGAGATGTTTCAGTTTATCCGATGATGCAT
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * * * *
142753 TGTGTGGTGCCAGTATAGGTGCTTCGTTATATTCGATGATTCCC
1 TGTGT-GTGCCAGTATAGATGCTTGGTT-TATCCGATGATGCAC
* * * * * * ** *
142797 TGTATTTTCCAGTATAGTTGTTTCAGTTTATTTGATGATTCAC
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * *
142840 TGTGTGTGCCAGTATAGATGCTTTGATTTATTCGATGAGGCAC
1 TGTGTGTGCCAGTATAGATGC-TTGGTTTATCCGATGATGCAC
* * ***
142883 TGTGTGTTCTAGTATAGATGCTTTGGTTTATATAATGATGCA-
1 TGTGTGTGCCAGTATAGATGC-TTGGTTTATCCGATGATGCAC
* * * * *
142925 T-TGTGTGCATTAGTATAGATGTTTCAGTTTATTCGATTATGCAC
1 TGTGTGTGC--CAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * * * *
142969 TGTGTGT-CTA-TATAGATTCTTCGATTTAT---TTGATGCAT
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* *
143007 TGTGTGTGCCAGTATAGATACTTCGGTTTATTCGATGATGCA-
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
** * *
143049 T-TGTGTATCAGTATAGAAGCTTCGGTTTATTCGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * ***
143091 TGTGTGTGCCAATATAGATGCTTTGATTTATTTAATGATGCAC
1 TGTGTGTGCCAGTATAGATGC-TTGGTTTATCCGATGATGCAC
* * * * * * *
143134 TCTATGTGTCAGTATAAATACTTTAGTTTATCCGATGATGCGC
1 TGTGTGTGCCAGTATAGATGC-TTGGTTTATCCGATGATGCAC
* * * * * *
143177 TGTGTGTGCTAGTATAAATGTTTCGGTGTGTCCGATGATGTAC
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * * * *
143220 TATGTGTGCCTGTATAGATGTTTTAGTTTATTCGATGATGCAC
1 TGTGTGTGCCAGTATAGATG-CTTGGTTTATCCGATGATGCAC
* * * * * *
143263 TTTGTGTGCCAGTATATATGCTTCGATTTTTTCGATGATGCATTA
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCA--C
* * * *
143308 TGTGGGTGCCATTATTGATGCTTCGATTTATCCGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * * * *
143351 TGTGTGGGTGCTAGTACAGATGCTTCGGTATATCCGATGAGGCAT
1 TGTGT--GTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * * * * * ** * *
143396 TATTTGTGCGAGTATAGTTAT-TTTTGTATATTAGATGATGTAT
1 TGTGTGTGCCAGTATAG--ATGCTTGGTTTATCCGATGATGCAC
* * *
143439 TGTCTGTGTCAGTATAGATGCTTCGATTTA-CCTGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCC-GATGATGCAC
** * *
143482 TGTGT-T-CCAAAATAGATGCTTTGATTTA-CTCGATTATGCAC
1 TGTGTGTGCCAGTATAGATGC-TTGGTTTATC-CGATGATGCAC
* ** *
143523 --TGTGTGCCTGTATAGATTTTTCGGTTTA-CTCGATGATACAC
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATC-CGATGATGCAC
* * ** * *
143564 TATGTATGTTAGTGTAGATGCTTTTGTTTAT---ATG-T--AC
1 TGTGTGTGCCAGTATAGATGC-TTGGTTTATCCGATGATGCAC
* * * * *
143601 TGCGTGTGCTAGTATAGATGCTTTTGTTTATCCAATGATGCAT
1 TGTGTGTGCCAGTATAGATGC-TTGGTTTATCCGATGATGCAC
** * * * * * *
143644 TGCATTTGCCAATATAGATGTTTCGGTTTATCCGATAATACAT
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * * * * * *
143687 TGTGTGTACTAGTATAAATGCTTCGGTTTATTCAATGATGTAT
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * * *
143730 TGTGTGT-CTA-TATAGATGCTTTGGCTTATCCGATAATGCAT
1 TGTGTGTGCCAGTATAGATGC-TTGGTTTATCCGATGATGCAC
* * * * * * * *
143771 TATATATGACAGTATAGATGTTTCGGTTTATCTGATTATGCAT
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * * *
143814 TATGTGTGTCAG-AGTAGATGCTTCAG-TTATCCGATGATACAC
1 TGTGTGTGCCAGTA-TAGATGCTT-GGTTTATCCGATGATGCAC
* * ** *
143856 TGTGTGTGCTAGTATAGATGTTTCGGTTTATCTTATAATGCAC
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * * * *
143899 TATGTGTGTCAGTATAGATACTTTAGTTTATCCAATGATGCAC
1 TGTGTGTGCCAGTATAGATGC-TTGGTTTATCCGATGATGCAC
* ** **
143942 TTTGTGTGTGAGTATAGATGCTTTGGTTTATTTGATGATGCAC
1 TGTGTGTGCCAGTATAGATGC-TTGGTTTATCCGATGATGCAC
* * *
143985 TGTGTGTGACAATATAGATGCTTCGGTTTATTCGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * * * *
144028 TATGTATGCCAATATAGATGCTTCGGTTTATTCAATGATGCAC
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* ** *
144071 TGTTTGTGCCAGTATAGATGCTTCCATTTATTCGATGATGCAC
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
* * *
144114 TGTGTGTGCCAGTATAGTTGCTTCTGTTTATCCGATGATGCAT
1 TGTGTGTGCCAGTATAGATGCTT-GGTTTATCCGATGATGCAC
144157 TGTGTGTGCCAGTATAGATG
1 TGTGTGTGCCAGTATAGATG
144177 TTTCGGTGTA
Statistics
Matches: 1279, Mismatches: 301, Indels: 116
0.75 0.18 0.07
Matches are distributed among these distances:
37 28 0.02
38 13 0.01
39 6 0.00
40 26 0.02
41 136 0.11
42 99 0.08
43 847 0.66
44 49 0.04
45 75 0.06
ACGTcount: A:0.22, C:0.13, G:0.23, T:0.41
Consensus pattern (42 bp):
TGTGTGTGCCAGTATAGATGCTTGGTTTATCCGATGATGCAC
Found at i:142635 original size:86 final size:86
Alignment explanation
Indices: 142496--144188 Score: 1152
Period size: 86 Copynumber: 19.9 Consensus size: 86
142486 ATAGATGCTT
* * * * * * * *
142496 TGTGGGTGTCAGTATAGATGCTCTGGTATATCCGATAATACACTGTGTGTGCCAGTGTAGATGCT
1 TGTGTGTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGCT
142561 TCGGTTTATTCGATGATGCAC
66 TCGGTTTATTCGATGATGCAC
* ** * ** * *
142582 TATGTGTGTTAGTATAGATGCTTTGGTTTATTTGATGATGCGTTGTGTTTGCCAGTATAGATGTT
1 TGTGTGTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGCT
* * *
142647 TCGATGTATCCGATGATGCAC
66 TCGGTTTATTCGATGATGCAC
* * * * * *
142668 TTTGTGTGCCAGTATAGATGCTTT-GTTTATCCGATGATGCACTATGTGTGTCAGTAGAGATGTT
1 TGTGTGTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGCT
* * *
142732 TCAGTTTATCCGATGATGCAT
66 TCGGTTTATTCGATGATGCAC
* * * * * * * *
142753 TGTGTGGTGCCAGTATAGGTGC-TTCGTTATATTCGATGATTCCCTGTATTTTCCAGTATAGTTG
1 TGTGT-GTGCCAGTATAGATGCTTTGGTT-TATTCGATGATGCACTGTGTGTGCCAGTATAGATG
* * * *
142817 TTTCAGTTTATTTGATGATTCAC
64 CTTCGGTTTATTCGATGATGCAC
* * * *
142840 TGTGTGTGCCAGTATAGATGCTTTGATTTATTCGATGAGGCACTGTGTGTTCTAGTATAGATGCT
1 TGTGTGTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGCT
* *
142905 TTGGTTTATAT-AATGATGCA-
66 TCGGTTTAT-TCGATGATGCAC
* * * *
142925 T-TGTGTGCATTAGTATAGATG-TTTCAGTTTATTCGATTATGCACTGTGTGT-CTA-TATAGAT
1 TGTGTGTGC--CAGTATAGATGCTTT-GGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGAT
* * *
142986 TCTTCGATTTATT---TGATGCAT
63 GCTTCGGTTTATTCGATGATGCAC
* * ** *
143007 TGTGTGTGCCAGTATAGATACTTCGGTTTATTCGATGATGCA-T-TGTGTATCAGTATAGAAGCT
1 TGTGTGTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGCT
143070 TCGGTTTATTCGATGATGCAC
66 TCGGTTTATTCGATGATGCAC
* * ** * * * * *
143091 TGTGTGTGCCAATATAGATGCTTTGATTTATTTAATGATGCACTCTATGTGTCAGTATAAATACT
1 TGTGTGTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGCT
** * *
143156 TTAGTTTATCCGATGATGCGC
66 TCGGTTTATTCGATGATGCAC
* * * * * * * * *
143177 TGTGTGTGCTAGTATAAATG-TTTCGGTGTGTCCGATGATGTACTATGTGTGCCTGTATAGATGT
1 TGTGTGTGCCAGTATAGATGCTTT-GGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGC
**
143241 TTTAGTTTATTCGATGATGCAC
65 TTCGGTTTATTCGATGATGCAC
* * * * * * * * *
143263 TTTGTGTGCCAGTATATATGCTTCGATTTTTTCGATGATGCATTATGTGGGTGCCATTATTGATG
1 TGTGTGTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCA--CTGTGTGTGCCAGTATAGATG
* *
143328 CTTCGATTTATCCGATGATGCAC
64 CTTCGGTTTATTCGATGATGCAC
* * * * * * * * * * * *
143351 TGTGTGGGTGCTAGTACAGATGCTTCGGTATATCCGATGAGGCATTATTTGTGCGAGTATAGTTA
1 TGTGT--GTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATG
* ** * * * *
143416 TTTTTGTATATTAGATGATGTAT
64 CTTCGGTTTATTCGATGATGCAC
* * * * * **
143439 TGTCTGTGTCAGTATAGATGCTTCGATTTA-CCTGATGATGCACTGTGT-T-CCAAAATAGATGC
1 TGTGTGTGCCAGTATAGATGCTTTGGTTTATTC-GATGATGCACTGTGTGTGCCAGTATAGATGC
* * * *
143501 TTTGATTTACTCGATTATGCAC
65 TTCGGTTTATTCGATGATGCAC
* * * * * * ** *
143523 --TGTGTGCCTGTATAGAT-TTTTCGGTTTACTCGATGATACACTATGTATGTTAGTGTAGATGC
1 TGTGTGTGCCAGTATAGATGCTTT-GGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGC
**
143585 TTTTGTTTA-T--ATG-T--AC
65 TTCGGTTTATTCGATGATGCAC
* * * * * * ** * * *
143601 TGCGTGTGCTAGTATAGATGCTTTTGTTTATCCAATGATGCATTGCATTTGCCAATATAGATGTT
1 TGTGTGTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGCT
* * * *
143666 TCGGTTTATCCGATAATACAT
66 TCGGTTTATTCGATGATGCAC
* * * * * * * *
143687 TGTGTGTACTAGTATAAATGCTTCGGTTTATTCAATGATGTATTGTGTGT-CTA-TATAGATGCT
1 TGTGTGTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGCT
* * * * *
143750 TTGGCTTATCCGATAATGCAT
66 TCGGTTTATTCGATGATGCAC
* * * * * * * *
143771 TATATATGACAGTATAGATG-TTTCGGTTTA-TCTGATTATGCATTATGTGTGTCAG-AGTAGAT
1 TGTGTGTGCCAGTATAGATGCTTT-GGTTTATTC-GATGATGCACTGTGTGTGCCAGTA-TAGAT
* * *
143833 GCTTCAG-TTATCCGATGATACAC
63 GCTTCGGTTTATTCGATGATGCAC
* * * * * *
143856 TGTGTGTGCTAGTATAGATG-TTTCGGTTTA-TCTTATAATGCACTATGTGTGTCAGTATAGATA
1 TGTGTGTGCCAGTATAGATGCTTT-GGTTTATTC-GATGATGCACTGTGTGTGCCAGTATAGATG
** * *
143919 CTTTAGTTTATCCAATGATGCAC
64 CTTCGGTTTATTCGATGATGCAC
* ** * * *
143942 TTTGTGTGTGAGTATAGATGCTTTGGTTTATTTGATGATGCACTGTGTGTGACAATATAGATGCT
1 TGTGTGTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGCT
144007 TCGGTTTATTCGATGATGCAC
66 TCGGTTTATTCGATGATGCAC
* * * * * *
144028 TATGTATGCCAATATAGATGCTTCGGTTTATTCAATGATGCACTGTTTGTGCCAGTATAGATGCT
1 TGTGTGTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGCT
**
144093 TCCATTTATTCGATGATGCAC
66 TCGGTTTATTCGATGATGCAC
* * * *
144114 TGTGTGTGCCAGTATAGTTGCTTCT-GTTTATCCGATGATGCATTGTGTGTGCCAGTATAGATGT
1 TGTGTGTGCCAGTATAGATGCTT-TGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGC
*
144178 TTCGGTGTATT
65 TTCGGTTTATT
144189 GAAGAAGCAA
Statistics
Matches: 1245, Mismatches: 314, Indels: 96
0.75 0.19 0.06
Matches are distributed among these distances:
78 2 0.00
79 5 0.00
80 49 0.04
81 56 0.04
82 35 0.03
83 17 0.01
84 162 0.13
85 143 0.11
86 620 0.50
87 60 0.05
88 67 0.05
90 29 0.02
ACGTcount: A:0.22, C:0.13, G:0.23, T:0.41
Consensus pattern (86 bp):
TGTGTGTGCCAGTATAGATGCTTTGGTTTATTCGATGATGCACTGTGTGTGCCAGTATAGATGCT
TCGGTTTATTCGATGATGCAC
Found at i:142676 original size:129 final size:129
Alignment explanation
Indices: 142489--144183 Score: 1183
Period size: 129 Copynumber: 13.3 Consensus size: 129
142479 TGCTAGTATA
* * * * * * * * *
142489 GATGCTTTGTGGGTGTCAGTATAGATG-CTCTGGTATATCCGATAATACACTGTGTGTGCCAGTG
1 GATGCATTGTGTGTGCCAGTATAGATGTTTC-GGTTTATCCGATGATGCACTTTGTGTGCCAGTA
* * *
142553 TAGATGCTTCGGTTTATTCGATGATGCACTATGTGTGTTAGTATAGATGCTTTGGTTTATTTGAT
65 TAGATGCTTCGGTTTATTCGATGATGCACTGTGTGTGCTAGTATAGATGCTTTGGTTTATTCGAT
* * * *
142618 GATGCGTTGTGTTTGCCAGTATAGATGTTTCGATGTATCCGATGATGCACTTTGTGTGCCAGTAT
1 GATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTAT
* * * * * *
142683 AGATGCTT-TGTTTATCCGATGATGCACTATGTGTG-TCAGTAGAGATG-TTTCAGTTTATCCGA
66 AGATGCTTCGGTTTATTCGATGATGCACTGTGTGTGCT-AGTATAGATGCTTT-GGTTTATTCGA
142745 T
129 T
* * * * * * * * *
142746 GATGCATTGTGTGGTGCCAGTATAGGTGCTTC-GTTATATTCGATGATTCCCTGTATTTTCCAGT
1 GATGCATTGTGT-GTGCCAGTATAGATGTTTCGGTT-TATCCGATGATGCACTTTGTGTGCCAGT
* * * * * * *
142810 ATAGTTGTTTCAGTTTATTTGATGATTCACTGTGTGTGCCAGTATAGATGCTTTGATTTATTCGA
64 ATAGATGCTTCGGTTTATTCGATGATGCACTGTGTGTGCTAGTATAGATGCTTTGGTTTATTCGA
142875 T
129 T
* * * * *** *
142876 GAGGCACTGTGTGTTCTAGTATAGATGCTTT-GGTTTATATAATGATGCA--TTGTGTGCATTAG
1 GATGCATTGTGTGTGCCAGTATAGATG-TTTCGGTTTATCCGATGATGCACTTTGTGTGC--CAG
* * * * * *
142938 TATAGATGTTTCAGTTTATTCGATTATGCACTGTGTGT-CTA-TATAGATTCTTCGATTTATT--
63 TATAGATGCTTCGGTTTATTCGATGATGCACTGTGTGTGCTAGTATAGATGCTTTGGTTTATTCG
142999 -T
128 AT
** * **
143000 GATGCATTGTGTGTGCCAGTATAGATACTTCGGTTTATTCGATGATGCA--TTGTGTATCAGTAT
1 GATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTAT
* * * * **
143063 AGAAGCTTCGGTTTATTCGATGATGCACTGTGTGTGCCAATATAGATGCTTTGATTTATTTAAT
66 AGATGCTTCGGTTTATTCGATGATGCACTGTGTGTGCTAGTATAGATGCTTTGGTTTATTCGAT
* * * * * * * * * *
143127 GATGCACTCTATGTGTCAGTATAAATACTTT-AGTTTATCCGATGATGCGCTGTGTGTGCTAGTA
1 GATGCATTGTGTGTGCCAGTATAGAT-GTTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTA
* * * * * * * * *
143191 TAAATGTTTCGGTGTGTCCGATGATGTACTATGTGTGCCT-GTATAGATGTTTTAGTTTATTCGA
65 TAGATGCTTCGGTTTATTCGATGATGCACTGTGTGTG-CTAGTATAGATGCTTTGGTTTATTCGA
143255 T
129 T
* * * * *
143256 GATGCACTT-TGTGTGCCAGTATATATGCTTCGATTTTTTCGATGATGCA-TTATGTGGGTGCCA
1 GATGCA-TTGTGTGTGCCAGTATAGATGTTTCGGTTTATCCGATGATGCACTT-TGT--GTGCCA
* * * * * * *
143319 TTATTGATGCTTCGATTTATCCGATGATGCACTGTGTGGGTGCTAGTACAGATGCTTCGGTATAT
62 GTATAGATGCTTCGGTTTATTCGATGATGCACTGTGT--GTGCTAGTATAGATGCTTTGGTTTAT
*
143384 CCGAT
125 TCGAT
* * * * * * ** * ** * * *
143389 GAGGCATTATTTGTGCGAGTATAGTTATTTTTGTATATTAGATGATGTA-TTGTCTGTGTCAGTA
1 GATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTATCCGATGATGCACTT-TGTGTGCCAGTA
* * * ** * *
143453 TAGATGCTTCGATTTA-CCTGATGATGCACTGTGT-T-CCAAAATAGATGCTTTGATTTACTCGA
65 TAGATGCTTCGGTTTATTC-GATGATGCACTGTGTGTGCTAGTATAGATGCTTTGGTTTATTCGA
143515 T
129 T
* * * * * * * ** *
143516 TATGCA--CTGTGTGCCTGTATAGATTTTTCGGTTTA-CTCGATGATACACTATGTATGTTAGTG
1 GATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTATC-CGATGATGCACTTTGTGTGCCAGTA
** * * * *
143578 TAGATGCTTTTGTTTA-T--ATG-T--ACTGCGTGTGCTAGTATAGATGCTTTTGTTTATCCAAT
65 TAGATGCTTCGGTTTATTCGATGATGCACTGTGTGTGCTAGTATAGATGCTTTGGTTTATTCGAT
** * * * * * *
143637 GATGCATTGCATTTGCCAATATAGATGTTTCGGTTTATCCGATAATACA-TTGTGTGTACTAGTA
1 GATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTATCCGATGATGCACTT-TGTGTGCCAGTA
* * * * * *
143701 TAAATGCTTCGGTTTATTCAATGATGTATTGTGTGT-CTA-TATAGATGCTTTGGCTTATCCGAT
65 TAGATGCTTCGGTTTATTCGATGATGCACTGTGTGTGCTAGTATAGATGCTTTGGTTTATTCGAT
* * * * * * * *
143764 AATGCATTATATATGACAGTATAGATGTTTCGGTTTATCTGATTATGCA-TTATGTGTGTCAG-A
1 GATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTATCCGATGATGCACTT-TGTGTGCCAGTA
* * *
143827 GTAGATGCTTCAG-TTATCCGATGATACACTGTGTGTGCTAGTATAGATG-TTTCGGTTTA-TCT
65 -TAGATGCTTCGGTTTATTCGATGATGCACTGTGTGTGCTAGTATAGATGCTTT-GGTTTATTC-
*
143889 TAT
127 GAT
* * * * * * * **
143892 AATGCACTATGTGTGTCAGTATAGATACTTT-AGTTTATCCAATGATGCACTTTGTGTGTGAGTA
1 GATGCATTGTGTGTGCCAGTATAGAT-GTTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTA
* * * *
143956 TAGATGCTTTGGTTTATTTGATGATGCACTGTGTGTGAC-AATATAGATGCTTCGGTTTATTCGA
65 TAGATGCTTCGGTTTATTCGATGATGCACTGTGTGTG-CTAGTATAGATGCTTTGGTTTATTCGA
144020 T
129 T
* * * * * * *
144021 GATGCACTATGTATGCCAATATAGATGCTTCGGTTTATTCAATGATGCACTGTT-TGTGCCAGTA
1 GATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTATCCGATGATGCACT-TTGTGTGCCAGTA
** * * *
144085 TAGATGCTTCCATTTATTCGATGATGCACTGTGTGTGCCAGTATAGTTGCTTCT-GTTTATCCGA
65 TAGATGCTTCGGTTTATTCGATGATGCACTGTGTGTGCTAGTATAGATGCTT-TGGTTTATTCGA
144149 T
129 T
144150 GATGCATTGTGTGTGCCAGTATAGATGTTTCGGT
1 GATGCATTGTGTGTGCCAGTATAGATGTTTCGGT
144184 GTATTGAAGA
Statistics
Matches: 1216, Mismatches: 288, Indels: 124
0.75 0.18 0.08
Matches are distributed among these distances:
119 6 0.00
120 1 0.00
121 26 0.02
122 40 0.03
123 56 0.05
124 64 0.05
125 48 0.04
126 23 0.02
127 174 0.14
128 139 0.11
129 436 0.36
130 68 0.06
131 73 0.06
132 4 0.00
133 58 0.05
ACGTcount: A:0.22, C:0.13, G:0.23, T:0.41
Consensus pattern (129 bp):
GATGCATTGTGTGTGCCAGTATAGATGTTTCGGTTTATCCGATGATGCACTTTGTGTGCCAGTAT
AGATGCTTCGGTTTATTCGATGATGCACTGTGTGTGCTAGTATAGATGCTTTGGTTTATTCGAT
Found at i:143478 original size:176 final size:174
Alignment explanation
Indices: 143160--143480 Score: 385
Period size: 176 Copynumber: 1.8 Consensus size: 174
143150 AATACTTTAG
* * * * * * *
143160 TTTATCCGATGATGCGCTGTGTGTGCTAGTATAAATGTTTCGGTGTGTCCGATGATGTACTATGT
1 TTTATCCGATGATGCACTGTGTGTGCTAGTACAAATGCTTCGGTATATCCGATGAGGCACTATGT
* * * * * *
143225 GTGCCTGTATAGATGTTTTAGTTTATTCGATGATGCACTTTGTGTGCCAGTATATATGCTTCGAT
66 GTGCCAGTATAGATATTTTAGTATATTAGATGATGCACTTTCTGTGCCAGTATAGATGCTTCGAT
**
143290 TTTTTCGATGATGCATTATGTGGGTGCCATTATTGATGCTTCGA
131 TTCCTCGATGATGCATTATGTGGGTGCCATTATTGATGCTTCGA
* *
143334 TTTATCCGATGATGCACTGTGTGGGTGCTAGTACAGATGCTTCGGTATATCCGATGAGGCATTAT
1 TTTATCCGATGATGCACTGTGT--GTGCTAGTACAAATGCTTCGGTATATCCGATGAGGCACTAT
* * * * * *
143399 TTGTGCGAGTATAGTTATTTTTGTATATTAGATGATGTA-TTGTCTGTGTCAGTATAGATGCTTC
64 GTGTGCCAGTATAGATATTTTAGTATATTAGATGATGCACTT-TCTGTGCCAGTATAGATGCTTC
143463 GATTTACCT-GATGATGCA
128 GATTT-CCTCGATGATGCA
143481 CTGTGTTCCA
Statistics
Matches: 120, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
174 21 0.17
175 2 0.02
176 96 0.80
177 1 0.01
ACGTcount: A:0.21, C:0.13, G:0.25, T:0.41
Consensus pattern (174 bp):
TTTATCCGATGATGCACTGTGTGTGCTAGTACAAATGCTTCGGTATATCCGATGAGGCACTATGT
GTGCCAGTATAGATATTTTAGTATATTAGATGATGCACTTTCTGTGCCAGTATAGATGCTTCGAT
TTCCTCGATGATGCATTATGTGGGTGCCATTATTGATGCTTCGA
Found at i:157440 original size:18 final size:19
Alignment explanation
Indices: 157404--157449 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 19
157394 GTGCTGCTGA
157404 TATTATATTTTTCCTTTTT
1 TATTATATTTTTCCTTTTT
157423 TATT-TATTTATTCC-TTTT
1 TATTATATTT-TTCCTTTTT
157441 TATTATATT
1 TATTATATT
157450 GTTTGTGTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.72
Consensus pattern (19 bp):
TATTATATTTTTCCTTTTT
Found at i:161336 original size:69 final size:70
Alignment explanation
Indices: 161163--161339 Score: 277
Period size: 71 Copynumber: 2.5 Consensus size: 70
161153 TAACTTAATG
*
161163 AGTAAACATTTATCAAAACGACGTAATTTTGCCTTTTAATTTAATGATTTTGATTTTTAACTTAA
1 AGTAAACATTTATCAAAACGACGTAATTTTGCCTTTTAACTTAATGATTTTGATTTTTAACTT-A
161228 AAAAAA
65 AAAAAA
* * *
161234 AGTAAATATTTATCAAAACAACGTAGTTTTGCCTTTTAACTTAATGATTTTGACTTTTT-ACTT-
1 AGTAAACATTTATCAAAACGACGTAATTTTGCCTTTTAACTTAATGATTTTGA-TTTTTAACTTA
161297 AAAAAA
65 AAAAAA
*
161303 GGTAAACATTTATCAAAACGACGTAATTTTGCCTTTT
1 AGTAAACATTTATCAAAACGACGTAATTTTGCCTTTT
161340 CTTATTCAGA
Statistics
Matches: 97, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
69 39 0.40
71 53 0.55
72 5 0.05
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.41
Consensus pattern (70 bp):
AGTAAACATTTATCAAAACGACGTAATTTTGCCTTTTAACTTAATGATTTTGATTTTTAACTTAA
AAAAA
Found at i:161586 original size:31 final size:31
Alignment explanation
Indices: 161513--161589 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
161503 CTACCACCAG
* *
161513 TAGTCACTCAACTTTGATTTAAATAACAAAA
1 TAGTCACTCAATTTTGATATAAATAACAAAA
* * *
161544 AAATCACTCAATTTTGATATCAATAACAAAA
1 TAGTCACTCAATTTTGATATAAATAACAAAA
161575 TAGTCACTCAATTTT
1 TAGTCACTCAATTTT
161590 CAAAAAATAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.34
Consensus pattern (31 bp):
TAGTCACTCAATTTTGATATAAATAACAAAA
Found at i:185559 original size:22 final size:23
Alignment explanation
Indices: 185524--185566 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
185514 ATTCACACAA
185524 TAAACAAATCAATTAAATCGAGC
1 TAAACAAATCAATTAAATCGAGC
*
185547 TAAA-AAATTAATTAAATCGA
1 TAAACAAATCAATTAAATCGA
185567 CAATTGATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.56, C:0.12, G:0.07, T:0.26
Consensus pattern (23 bp):
TAAACAAATCAATTAAATCGAGC
Found at i:186968 original size:11 final size:11
Alignment explanation
Indices: 186952--186999 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
186942 AAAGGAAATC
186952 TTAATCTAATA
1 TTAATCTAATA
*
186963 TTAATCTAACA
1 TTAATCTAATA
*
186974 TTAATCCCTAATG
1 TTAAT--CTAATA
*
186987 GTAATCTAATA
1 TTAATCTAATA
186998 TT
1 TT
187000 TATCCTAATG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
11 21 0.72
13 8 0.28
ACGTcount: A:0.40, C:0.15, G:0.04, T:0.42
Consensus pattern (11 bp):
TTAATCTAATA
Found at i:186991 original size:24 final size:23
Alignment explanation
Indices: 186964--187009 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
186954 AATCTAATAT
186964 TAATCTAACATTAATCCCTAATGG
1 TAATCTAACATTAAT-CCTAATGG
* *
186988 TAATCTAATATTTATCCTAATG
1 TAATCTAACATTAATCCTAATG
187010 TTGTCGTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (23 bp):
TAATCTAACATTAATCCTAATGG
Found at i:190157 original size:60 final size:61
Alignment explanation
Indices: 190052--190287 Score: 225
Period size: 60 Copynumber: 3.9 Consensus size: 61
190042 GAGAATTTGA
* * ** *
190052 AAAACAAAATTCAAATCTTTTTGGTGTTGGCCATGCATTAACCGACACTACCTATTT-TCTGAT
1 AAAA-AAAA-TCAAATATTTTTGGTGTTAGCCATGCATTGGCCGACACCACCT-TTTATCTGAT
*
190115 AAAAAAAATCAAAT-TTTTTGGTGTTAGCCATTACA-TGGCCGACACCACCTTTCTATCTGAT
1 AAAAAAAATCAAATATTTTTGGTGTTAGCCA-TGCATTGGCCGACACCACCTTT-TATCTGAT
* * * **
190176 AAAAAAATTCAAATATTTTTTGTGTTGGCCATGCATTGGCCGACACCATATTTTTATCTG--
1 AAAAAAAATCAAATATTTTTGGTGTTAGCCATGCATTGGCCGACACCA-CCTTTTATCTGAT
* * * *
190236 GAAAAAAATCAAAT-TTCTTGGTGTTAGCCATTGC-TTGGCTGACACCAACTTT
1 AAAAAAAATCAAATATTTTTGGTGTTAGCCA-TGCATTGGCCGACACCACCTTT
190288 CCCCCATTTC
Statistics
Matches: 148, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
58 4 0.03
59 27 0.18
60 43 0.29
61 31 0.21
62 36 0.24
63 7 0.05
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (61 bp):
AAAAAAAATCAAATATTTTTGGTGTTAGCCATGCATTGGCCGACACCACCTTTTATCTGAT
Found at i:190241 original size:122 final size:121
Alignment explanation
Indices: 190057--190288 Score: 313
Period size: 121 Copynumber: 1.9 Consensus size: 121
190047 TTTGAAAAAC
* * * *
190057 AAAATTCAAATCTTTTTGGTGTTGGCCATGCATTAACCGACACTACCTATTTTCTGATAAAAAAA
1 AAAATTCAAATATTTTTGGTGTTGGCCATGCATTAACCGACACCACATATTTTCTGA-GAAAAAA
* *
190122 ATCAAATTTTTTGGTGTTAGCCATTACATGGCCGACACCACCTTTCTATCTGATAAA
65 ATCAAATTTCTTGGTGTTAGCCATTACATGGCCGACACCAACTTTCTATCTGATAAA
* ** * *
190179 AAAATTCAAATATTTTTTGTGTTGGCCATGCATTGGCCGACACCATATTTTTATCTG-GAAAAAA
1 AAAATTCAAATATTTTTGGTGTTGGCCATGCATTAACCGACACCACATATTT-TCTGAGAAAAAA
* * *
190243 ATCAAATTTCTTGGTGTTAGCCATTGCTTGGCTGACACCAACTTTC
65 ATCAAATTTCTTGGTGTTAGCCATTACATGGCCGACACCAACTTTC
190289 CCCCATTTCT
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
121 47 0.49
122 44 0.46
123 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (121 bp):
AAAATTCAAATATTTTTGGTGTTGGCCATGCATTAACCGACACCACATATTTTCTGAGAAAAAAA
TCAAATTTCTTGGTGTTAGCCATTACATGGCCGACACCAACTTTCTATCTGATAAA
Found at i:190274 original size:59 final size:60
Alignment explanation
Indices: 190116--190282 Score: 203
Period size: 62 Copynumber: 2.8 Consensus size: 60
190106 TTTTCTGATA
* * * *
190116 AAAAAAATCAAATTTTTTGGTGTTAGCCATTACATGGCCGACACCACCTTTCTATCTGAT
1 AAAAAAATCAAATTTTTTGGTGTTAGCCATTGCTTGGCCGACACCACATTTCTATCTGAG
* * * *
190176 AAAAAAATTCAAATATTTTTTGTGTTGGCCA-TGCATTGGCCGACACCATATTTTTATCTG-G
1 AAAAAAA-TCAAAT-TTTTTGGTGTTAGCCATTGC-TTGGCCGACACCACATTTCTATCTGAG
* *
190237 AAAAAAATCAAATTTCTTGGTGTTAGCCATTGCTTGGCTGACACCA
1 AAAAAAATCAAATTTTTTGGTGTTAGCCATTGCTTGGCCGACACCA
190283 ACTTTCCCCC
Statistics
Matches: 91, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
59 25 0.27
60 16 0.18
61 15 0.16
62 35 0.38
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (60 bp):
AAAAAAATCAAATTTTTTGGTGTTAGCCATTGCTTGGCCGACACCACATTTCTATCTGAG
Found at i:190932 original size:30 final size:30
Alignment explanation
Indices: 190898--191015 Score: 134
Period size: 30 Copynumber: 4.0 Consensus size: 30
190888 GAAAAATAAT
* *
190898 AATTAGAAATAAAATTTAAAATATAAACGA
1 AATTACAAATTAAATTTAAAATATAAACGA
*
190928 AATTACAAATT-AATATTAAAATA-AACAAGA
1 AATTACAAATTAAAT-TTAAAATATAA-ACGA
* *
190958 AATTAGAAATTAAATTTAAAATATAAATGA
1 AATTACAAATTAAATTTAAAATATAAACGA
* *
190988 AATT-CAAATTAAATTAAAAAAATAAACG
1 AATTACAAATTAAATTTAAAATATAAACG
191016 GAAAAAAATC
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
29 25 0.33
30 45 0.60
31 5 0.07
ACGTcount: A:0.63, C:0.04, G:0.05, T:0.28
Consensus pattern (30 bp):
AATTACAAATTAAATTTAAAATATAAACGA
Found at i:191477 original size:24 final size:24
Alignment explanation
Indices: 191450--191496 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
191440 TGGGGATCGG
* *
191450 GTTGGTGCTCCGGCTGGTACTCGA
1 GTTGGTCCTCCGGCTCGTACTCGA
*
191474 GTTGGTCCTCGGGCTCGTACTCG
1 GTTGGTCCTCCGGCTCGTACTCG
191497 GGCTCCTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.06, C:0.28, G:0.36, T:0.30
Consensus pattern (24 bp):
GTTGGTCCTCCGGCTCGTACTCGA
Found at i:192033 original size:18 final size:18
Alignment explanation
Indices: 192010--192046 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
192000 AGACTACCAC
192010 ACGAATTGCACAGTATAA
1 ACGAATTGCACAGTATAA
192028 ACGAATTGCACAGTATAA
1 ACGAATTGCACAGTATAA
192046 A
1 A
192047 AACACGAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.22
Consensus pattern (18 bp):
ACGAATTGCACAGTATAA
Found at i:192188 original size:20 final size:20
Alignment explanation
Indices: 192163--192203 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
192153 TTTATTTTTT
*
192163 AAAAATTCAAAAATATAAAA
1 AAAAATTCAAAAATAGAAAA
**
192183 AAAAATTTGAAAATAGAAAA
1 AAAAATTCAAAAATAGAAAA
192203 A
1 A
192204 TATTATAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (20 bp):
AAAAATTCAAAAATAGAAAA
Found at i:192226 original size:31 final size:28
Alignment explanation
Indices: 192171--192227 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 28
192161 TTAAAAATTC
192171 AAAAATATAAAAAAAAATTTGAAAATAG
1 AAAAATATAAAAAAAAATTTGAAAATAG
*
192199 AAAAATATTATAAAAAATATTTCGAAAAT
1 AAAAATA-TA-AAAAAAAATTT-GAAAAT
192228 GTATTTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 7 0.28
29 2 0.08
30 10 0.40
31 6 0.24
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (28 bp):
AAAAATATAAAAAAAAATTTGAAAATAG
Found at i:192267 original size:13 final size:13
Alignment explanation
Indices: 192249--192273 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
192239 ATTTTGAAAA
192249 TGTAAAAAATATT
1 TGTAAAAAATATT
192262 TGTAAAAAATAT
1 TGTAAAAAATAT
192274 CAGATTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (13 bp):
TGTAAAAAATATT
Found at i:192365 original size:126 final size:125
Alignment explanation
Indices: 192111--192366 Score: 358
Period size: 126 Copynumber: 2.0 Consensus size: 125
192101 TTTGTAAAAA
192111 ATATTTCGAAAATGTAAAAAATATTTGTAAAAATATCAGATTTTTATTTTTTAAAAATTCAAAAA
1 ATATTTCGAAAATGTAAAAAATATTTGTAAAAATATCAGATTTTTATTTTTTAAAAATTCAAAAA
* * *
192176 TATAAAAAAAAATTTGAAAATAGAAAAATATTATAAAAAATATTTCGAAAATGTATTTTTT
66 TATAAAAAAAAATTTAAAAATAGAAAAATATTATAAAAAATATTTCGAAAA-GTATATCTT
* *
192237 ATATTTTGAAAATGTAAAAAATATTTGTAAAAAATATCAGATTTTTATTTTTTTTAAAAATTCGA
1 ATATTTCGAAAATGTAAAAAATATTTGT-AAAAATATCAGATTTTTA--TTTTTTAAAAATTCAA
* * *
192302 AAATATATAAAAACATTTCAAAAATAGAAAAAATATTAT-AAAAA-A-TTCTAAAA-TATATCTT
63 AAATATAAAAAAAAATTT-AAAAATAG-AAAAATATTATAAAAAATATTTCGAAAAGTATATCTT
192363 ATAT
1 ATAT
192367 CATCTCTTCT
Statistics
Matches: 117, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
126 37 0.32
127 18 0.15
128 7 0.06
129 32 0.27
130 12 0.10
131 11 0.09
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.38
Consensus pattern (125 bp):
ATATTTCGAAAATGTAAAAAATATTTGTAAAAATATCAGATTTTTATTTTTTAAAAATTCAAAAA
TATAAAAAAAAATTTAAAAATAGAAAAATATTATAAAAAATATTTCGAAAAGTATATCTT
Found at i:193432 original size:22 final size:22
Alignment explanation
Indices: 193407--193476 Score: 97
Period size: 22 Copynumber: 3.2 Consensus size: 22
193397 TGGGTGGTGC
*
193407 TGAGCTGGAATTTCGATTT-TGG
1 TGAGCTGGAATTTCGATTTAT-A
*
193429 TGAGCTGGAATTTCGGTTTATA
1 TGAGCTGGAATTTCGATTTATA
*
193451 TGAGCTGGAATTTCGGTTTATA
1 TGAGCTGGAATTTCGATTTATA
193473 TGAG
1 TGAG
193477 TTGGTTATAG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
22 44 0.98
23 1 0.02
ACGTcount: A:0.21, C:0.09, G:0.30, T:0.40
Consensus pattern (22 bp):
TGAGCTGGAATTTCGATTTATA
Found at i:193724 original size:93 final size:94
Alignment explanation
Indices: 193556--194360 Score: 1072
Period size: 93 Copynumber: 8.5 Consensus size: 94
193546 TAAATATAAA
* * *
193556 ATTTTATAAAAATTGTAAAAAAAAAATAATAGTTTTTGATTTAAAT-AATTTAAAATTTTAAAAA
1 ATTTGATAAAAATTGT---AAAATAATAATAGTTTTTTATTTAAATAAATTTAAAA-TTTAAAAA
*
193620 TTGGTAAATAATGTATTGTCAAGTCAACACATT
62 TTGGTAAATAATGTATTGTCAAATCAACACATT
*
193653 ATTTGATAAAAATTTTAAAATAATAATAG-TTTTTATTTAAATAAATTTAAAATTTAAAAATTGG
1 ATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAAATTTAAAATTTAAAAATTGG
* * *
193717 TAAATAATGTATTATTAAATCAACAAATT
66 TAAATAATGTATTGTCAAATCAACACATT
* ** **
193746 ATTTGATAAAAATTTTAAAATAATAATAGTTTTTTA---AAATAAATTTAAAAAATAAAAATTAA
1 ATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAAATTTAAAATTTAAAAATTGG
* * *
193808 TAAATAATGTATTATTAAATTAACACATT
66 TAAATAATGTATTGTCAAATCAACACATT
193837 ATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAA-AAA-TTAAAATTTAAAAATTGG
1 ATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAAATTTAAAATTTAAAAATTGG
*
193900 TAAATAATGTATTGTCAAATCAATACATTT
66 TAAATAATGTATTGTCAAATCAACACA-TT
* *
193930 TTTTGATAAAAATTGTAAATTAATAATAGTTTTTTATTTAAAT-AATTTAAAATTTTAAAAATTG
1 ATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAAATTTAAAA-TTTAAAAATTG
*
193994 ATAAATAATGTATTGTCAAATCAACACATT
65 GTAAATAATGTATTGTCAAATCAACACATT
* * *
194024 ATTTGATAAAAATTGTAAAATAATAATGGTTTTTTATTTAAATAATTTTAAAA-TTAAAAATTGA
1 ATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAAATTTAAAATTTAAAAATTGG
194088 TAAATAATGTATTGTCAAATCAACACATT
66 TAAATAATGTATTGTCAAATCAACACATT
* * * * *
194117 ATTTAATAAAAATTATAATATAATAGTAGTTTTTTATTTAAATAATTTTAATATAATTTAAAAAT
1 ATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAAATTT-A-A-AATTTAAAAAT
* * *
194182 TAGTAAATAATGTATTATCAAATCAATA-ATT
63 TGGTAAATAATGTATTGTCAAATCAACACATT
* * *
194213 ATTTGATAAAAAATGTAATATAATAATAGTTTTTTATTTAAATAATTTTAACATAATTTAAAAAT
1 ATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAAATTT-A-A-AATTTAAAAAT
* * *
194278 TAGTAAATAATGTATTGTCAAATTAATACATT
63 TGGTAAATAATGTATTGTCAAATCAACACATT
* * *
194310 ATTTGATAAAAATTGTAATATAATAATAATTTTTTATTTAAATAATTTTAA
1 ATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAAATTTAA
194361 CATAATTTTA
Statistics
Matches: 644, Mismatches: 49, Indels: 32
0.89 0.07 0.04
Matches are distributed among these distances:
91 84 0.13
92 37 0.06
93 209 0.32
94 79 0.12
95 47 0.07
96 92 0.14
97 96 0.15
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (94 bp):
ATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAAATTTAAAATTTAAAAATTGG
TAAATAATGTATTGTCAAATCAACACATT
Found at i:194032 original size:187 final size:188
Alignment explanation
Indices: 193580--194357 Score: 1076
Period size: 187 Copynumber: 4.1 Consensus size: 188
193570 GTAAAAAAAA
* * * *
193580 AATAATAGTTTTTGATTTAAATAATTTAAAATTTTAAAAATTGGTAAATAATGTATTGTCAAGTC
1 AATAATAGTTTTTTATTTAAATAATTTAAAATTTTAAAAATTGATAAATAATGTATTATCAAATC
*
193645 AACACATTATTTGATAAAAATTTTAAAATAATAATAG-TTTTTATTTAAATAA-ATTTAAAATTT
66 AACACATTATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAATA-TTAAAATTT
* * * * *
193708 AAAAATTGGTAAATAATGTATTATTAAATCAACAAATTATTTGATAAAAATTTTAAAAT
130 AAAAATTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATAAAAATTGTAATAT
** * *
193767 AATAATAGTTTTTTA---AAATAAATTTAAAA-AATAAAAATTAATAAATAATGTATTATTAAAT
1 AATAATAGTTTTTTATTTAAAT-AATTTAAAATTTTAAAAATTGATAAATAATGTATTATCAAAT
*
193828 TAACACATTATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAA-AA-ATTAAAATTT
65 CAACACATTATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAATATTAAAATTT
* *
193891 AAAAATTGGTAAATAATGTATTGTCAAATCAATACATTTTTTTGATAAAAATTGTAA-ATT
130 AAAAATTGGTAAATAATGTATTGTCAAATCAACACA-TTATTTGATAAAAATTGTAATA-T
*
193951 AATAATAGTTTTTTATTTAAATAATTTAAAATTTTAAAAATTGATAAATAATGTATTGTCAAATC
1 AATAATAGTTTTTTATTTAAATAATTTAAAATTTTAAAAATTGATAAATAATGTATTATCAAATC
* *
194016 AACACATTATTTGATAAAAATTGTAAAATAATAATGGTTTTTTATTTAAATAATTTTAAAA-TTA
66 AACACATTATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAATATTAAAATTTA
* * *
194080 AAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTAATAAAAATTATAATAT
131 AAAATTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATAAAAATTGTAATAT
* *
194138 AATAGTAGTTTTTTATTTAAATAATTTTAATATAATTTAAAAATT-AGTAAATAATGTATTATCA
1 AATAATAGTTTTTTATTTAAATAA-TTTAA-A-ATTTTAAAAATTGA-TAAATAATGTATTATCA
* * * *
194202 AATCAATA-ATTATTTGATAAAAAATGTAATATAATAATAGTTTTTTATTTAAATAATTTTAACA
62 AATCAACACATTATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAATATT-A-A
* * *
194266 TAATTTAAAAATTAGTAAATAATGTATTGTCAAATTAATACATTATTTGATAAAAATTGTAATAT
125 -AATTTAAAAATTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATAAAAATTGTAATAT
*
194331 AATAATAATTTTTTATTTAAATAATTT
1 AATAATAGTTTTTTATTTAAATAATTT
194358 TAACATAATT
Statistics
Matches: 528, Mismatches: 44, Indels: 33
0.87 0.07 0.05
Matches are distributed among these distances:
183 42 0.08
184 102 0.19
185 21 0.04
186 9 0.02
187 135 0.26
188 44 0.08
189 57 0.11
190 35 0.07
191 1 0.00
192 5 0.01
193 77 0.15
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (188 bp):
AATAATAGTTTTTTATTTAAATAATTTAAAATTTTAAAAATTGATAAATAATGTATTATCAAATC
AACACATTATTTGATAAAAATTGTAAAATAATAATAGTTTTTTATTTAAATAATATTAAAATTTA
AAAATTGGTAAATAATGTATTGTCAAATCAACACATTATTTGATAAAAATTGTAATAT
Found at i:194122 original size:48 final size:48
Alignment explanation
Indices: 193974--194122 Score: 123
Period size: 48 Copynumber: 3.1 Consensus size: 48
193964 TATTTAAATA
193974 ATTTAAAATTTTAAAAATTGATAAATAATGTATTGTCAAATCAACACATT
1 ATTTAAAA--TTAAAAATTGATAAATAATGTATTGTCAAATCAACACATT
* * ** * * * *
194024 ATTT--GA-TAAAAATTGTAAAATAATAATGGT-TT-TTTATTTAA-ATAAT
1 ATTTAAAATTAAAAATTG--ATA-AATAAT-GTATTGTCAAATCAACACATT
194070 -TTTAAAATTAAAAATTGATAAATAATGTATTGTCAAATCAACACATT
1 ATTTAAAATTAAAAATTGATAAATAATGTATTGTCAAATCAACACATT
194117 ATTTAA
1 ATTTAA
194123 TAAAAATTAT
Statistics
Matches: 72, Mismatches: 16, Indels: 24
0.64 0.14 0.21
Matches are distributed among these distances:
44 2 0.03
45 20 0.28
46 10 0.14
47 11 0.15
48 23 0.32
49 2 0.03
50 4 0.06
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.40
Consensus pattern (48 bp):
ATTTAAAATTAAAAATTGATAAATAATGTATTGTCAAATCAACACATT
Found at i:194127 original size:45 final size:45
Alignment explanation
Indices: 193985--194140 Score: 140
Period size: 45 Copynumber: 3.4 Consensus size: 45
193975 TTTAAAATTT
*
193985 TAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTGA
1 TAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTAA
* * * ** * * *
194030 TAAAAATTGTAAAATAATAATGGT-TTTTTATTTAAATA-ATT-TTAAAA
1 TAAAAATTG--ATA-AATAAT-GTATTGTCAAATCAACACATTATT-TAA
194077 TTAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTAA
1 -TAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTAA
194123 TAAAAATT-ATAATATAAT
1 TAAAAATTGATAA-ATAAT
194141 AGTAGTTTTT
Statistics
Matches: 84, Mismatches: 17, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
44 6 0.07
45 36 0.43
46 9 0.11
47 8 0.10
48 23 0.27
49 2 0.02
ACGTcount: A:0.49, C:0.05, G:0.06, T:0.39
Consensus pattern (45 bp):
TAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTAA
Found at i:194351 original size:371 final size:366
Alignment explanation
Indices: 193600--194346 Score: 1054
Period size: 371 Copynumber: 2.0 Consensus size: 366
193590 TTTGATTTAA
* *
193600 ATAATTTAAAATTTTAAAAATTGGTAAATAATGTATTGTCAAGTCAACACATTATTTGATAAAAA
1 ATAATTTAAAATTTTAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTGATAAAAA
* *
193665 TTTTAAAATAATAATAGTTTTTATTTAAATAAATTTAAAATTTAAAAATTGGTAAATAATGTATT
66 TTGTAAAATAATAATAGTTTTTATTTAAATAAATTTAAAATTTAAAAATTGATAAATAATGTATT
* * *
193730 ATTAAATCAACAAATTATTTGATAAAAATTTTAAAATAATAATAGTTTTTTAAAATAAATTTAAA
131 ATCAAATCAACAAATTATTTAATAAAAATTATAAAATAATAATAGTTTTTTAAAATAAATTTAAA
* * *
193795 AAATAAAAATTAATAAATAATGTATTATTAAATTAACACATTATTTGATAAAAATTGTAAAATAA
196 AAATAAAAATTAATAAATAATGTATTATCAAATCAACACATTATTTGATAAAAAATGTAAAATAA
*
193860 TAATAGTTTTTTATTTAAAAAATTAAAATTTAAAAATTGGTAAATAATGTATTGTCAAATCAATA
261 TAATAGTTTTTTATTTAAAAAATTAAAATTTAAAAATTAGTAAATAATGTATTGTCAAATCAATA
* *
193925 CATTTTTTTGATAAAAATTGTAAATTAATAATAGTTTTTTATTT
326 CATTTATTTGATAAAAATTGTAAATTAATAATA---TATTATTT
193969 AAATAATTTAAAATTTTAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTGATAAA
1 --ATAATTTAAAATTTTAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTGATAAA
* *
194034 AATTGTAAAATAATAATGGTTTTTTATTTAAATAATTTTAAAA-TTAAAAATTGATAAATAATGT
64 AATTGTAAAATAATAATAG-TTTTTATTTAAATAAATTTAAAATTTAAAAATTGATAAATAATGT
* * * * *
194098 ATTGTCAAATCAACACATTATTTAATAAAAATTATAATATAATAGTAGTTTTTTATTTAAATAAT
128 ATTATCAAATCAACAAATTATTTAATAAAAATTATAAAATAATAATAGTTTTTTA---AAATAAA
* * *
194163 TTTAATATAATTTAAAAATTAGTAAATAATGTATTATCAAATCAATA-ATTATTTGATAAAAAAT
190 TTTAA-A-AA-ATAAAAATTAATAAATAATGTATTATCAAATCAACACATTATTTGATAAAAAAT
* *
194227 GTAATATAATAATAGTTTTTTATTTAAATAATTTTAACATAATTTAAAAATTAGTAAATAATGTA
252 GTAAAATAATAATAGTTTTTTATTTAAA-AA-ATT-A-A-AATTTAAAAATTAGTAAATAATGTA
* *
194292 TTGTCAAATTAATACA-TTATTTGATAAAAATTGT-AATATAATAATA-ATTTTTT
312 TTGTCAAATCAATACATTTATTTGATAAAAATTGTAAAT-TAATAATATATTATTT
194345 AT
1 AT
194347 TTAAATAATT
Statistics
Matches: 336, Mismatches: 27, Indels: 23
0.87 0.07 0.06
Matches are distributed among these distances:
371 146 0.43
372 22 0.07
374 13 0.04
375 1 0.00
376 50 0.15
377 33 0.10
378 2 0.01
379 4 0.01
380 26 0.08
381 39 0.12
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (366 bp):
ATAATTTAAAATTTTAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTGATAAAAA
TTGTAAAATAATAATAGTTTTTATTTAAATAAATTTAAAATTTAAAAATTGATAAATAATGTATT
ATCAAATCAACAAATTATTTAATAAAAATTATAAAATAATAATAGTTTTTTAAAATAAATTTAAA
AAATAAAAATTAATAAATAATGTATTATCAAATCAACACATTATTTGATAAAAAATGTAAAATAA
TAATAGTTTTTTATTTAAAAAATTAAAATTTAAAAATTAGTAAATAATGTATTGTCAAATCAATA
CATTTATTTGATAAAAATTGTAAATTAATAATATATTATTT
Found at i:194445 original size:286 final size:282
Alignment explanation
Indices: 193581--194360 Score: 936
Period size: 278 Copynumber: 2.8 Consensus size: 282
193571 TAAAAAAAAA
* * *
193581 ATAATAGT--TTTTG-ATTTAAATAA-TTTAA-A-ATTTTAAAAATTGGTAAATAATGTATTGTC
1 ATAATAGTAGTTTTGAATTTAAATAATTTTAATATAATTTAAAAATTAGTAAATAATGTATTATC
* * * * *
193640 AAGTCAACACA-TTATTTGATAAAAATTTTAAAATAATAATAG-TTTTTATTTAAATAAATTT-A
66 AAATCAATACATTTATTTGATAAAAAATGTAAATTAATAATAGTTTTTTATTTAAAT-AATTTAA
* * * * *
193702 AAATTTAAAAATTGGTAAATAATGTATTATTAAATCAACAAATTATTTGATAAAAATTTTAAAAT
130 AAATTTAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTGATAAAAATTGTAAAAT
* * * * * *
193767 AATAATAGTTTTTTA---AAATAAATTTAAAAAATAAAAATTAATAAATAATGTATTATTAAATT
195 AATAATAATTTTTTATTTAAAT-AATTT-TAAAAT-TAAATT-ATAAATAATGTATTGTCAAATC
* * * *
193829 AACACATTATTTGATAAAAATTGTAAA
256 AACACATAATTTAATAAAAATTATAAT
* ** * * *
193856 ATAATAATAGTTTTTTATTTAAA-AA-ATT-A-A-AATTTAAAAATTGGTAAATAATGTATTGTC
1 ATAATAGTAGTTTTGAATTTAAATAATTTTAATATAATTTAAAAATTAGTAAATAATGTATTATC
* *
193916 AAATCAATACATTTTTTTGATAAAAATTGTAAATTAATAATAGTTTTTTATTTAAATAATTTAAA
66 AAATCAATACATTTATTTGATAAAAAATGTAAATTAATAATAGTTTTTTATTTAAATAATTTAAA
*
193981 ATTTTAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTGATAAAAATTGTAAAATA
131 AATTTAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTGATAAAAATTGTAAAATA
**
194046 ATAATGGTTTTTTATTTAAATAATTTTAAAATTAAAAATTGATAAATAATGTATTGTCAAATCAA
196 ATAATAATTTTTTATTTAAATAATTTTAAAATT--AAATT-ATAAATAATGTATTGTCAAATCAA
*
194111 CACATTATTTAATAAAAATTATAAT
258 CACATAATTTAATAAAAATTATAAT
**
194136 ATAATAGTAGTTTTTTATTTAAATAATTTTAATATAATTTAAAAATTAGTAAATAATGTATTATC
1 ATAATAGTAGTTTTGAATTTAAATAATTTTAATATAATTTAAAAATTAGTAAATAATGTATTATC
194201 AAATCAATA-A-TTATTTGATAAAAAATGT-AATATAATAATAGTTTTTTATTTAAATAATTTTA
66 AAATCAATACATTTATTTGATAAAAAATGTAAAT-TAATAATAGTTTTTTATTTAAATAA-TTTA
* *
194263 ACATAATTTAAAAATT-AGTAAATAATGTATTGTCAAATTAATACATTATTTGATAAAAATTGTA
129 A-A-AATTTAAAAATTGA-TAAATAATGTATTGTCAAATCAACACATTATTTGATAAAAATTGTA
*
194327 ATATAATAATAATTTTTTATTTAAATAATTTTAA
191 AAATAATAATAATTTTTTATTTAAATAATTTTAA
194361 CATAATTTTA
Statistics
Matches: 447, Mismatches: 37, Indels: 31
0.87 0.07 0.06
Matches are distributed among these distances:
275 7 0.02
276 40 0.09
277 41 0.09
278 94 0.21
279 5 0.01
280 75 0.17
281 6 0.01
282 5 0.01
283 42 0.09
284 7 0.02
285 39 0.09
286 86 0.19
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (282 bp):
ATAATAGTAGTTTTGAATTTAAATAATTTTAATATAATTTAAAAATTAGTAAATAATGTATTATC
AAATCAATACATTTATTTGATAAAAAATGTAAATTAATAATAGTTTTTTATTTAAATAATTTAAA
AATTTAAAAATTGATAAATAATGTATTGTCAAATCAACACATTATTTGATAAAAATTGTAAAATA
ATAATAATTTTTTATTTAAATAATTTTAAAATTAAATTATAAATAATGTATTGTCAAATCAACAC
ATAATTTAATAAAAATTATAAT
Found at i:197406 original size:26 final size:25
Alignment explanation
Indices: 197377--197451 Score: 89
Period size: 26 Copynumber: 3.0 Consensus size: 25
197367 TTTTTTTTGT
*
197377 TTATTTCTTAAAATTAATTTTAATTA
1 TTATTT-TTAAAATTATTTTTAATTA
**
197403 TTATTTTTTCAATATATTTTTAATTA
1 TTATTTTTAAAAT-TATTTTTAATTA
*
197429 TTATTTTTAATA-TATTTTTAATT
1 TTATTTTTAAAATTATTTTTAATT
197452 TATCGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
24 11 0.26
25 5 0.12
26 26 0.62
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (25 bp):
TTATTTTTAAAATTATTTTTAATTA
Found at i:197410 original size:13 final size:13
Alignment explanation
Indices: 197389--197451 Score: 71
Period size: 13 Copynumber: 5.0 Consensus size: 13
197379 ATTTCTTAAA
*
197389 ATTAATTTTAATT
1 ATTATTTTTAATT
197402 ATTATTTTTTCAA-T
1 ATTA-TTTTT-AATT
197416 A-TATTTTTAATT
1 ATTATTTTTAATT
197428 ATTATTTTTAA-T
1 ATTATTTTTAATT
197440 A-TATTTTTAATT
1 ATTATTTTTAATT
197452 TATCGATAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 11
0.79 0.02 0.20
Matches are distributed among these distances:
11 11 0.25
12 10 0.23
13 15 0.34
14 6 0.14
15 2 0.05
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (13 bp):
ATTATTTTTAATT
Found at i:197440 original size:24 final size:26
Alignment explanation
Indices: 197394--197451 Score: 102
Period size: 24 Copynumber: 2.3 Consensus size: 26
197384 TTAAAATTAA
197394 TTTTAATTATTATTTTTTCAATATAT
1 TTTTAATTATTATTTTTTCAATATAT
197420 TTTTAATTATTA-TTTTT-AATATAT
1 TTTTAATTATTATTTTTTCAATATAT
197444 TTTTAATT
1 TTTTAATT
197452 TATCGATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 15 0.47
25 5 0.16
26 12 0.38
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (26 bp):
TTTTAATTATTATTTTTTCAATATAT
Done.