genome.fa.s15083.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015083.1 Kokia drynarioides strain JFW-HI SEQ_130127, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  241667

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11303--11383	24	3.4	24	77	6	92	34	22	29	13	1.92
12411--12530	63	1.9	63	100	0	240	35	15	16	32	1.90
16353--16411	31	1.9	31	89	0	91	35	18	15	30	1.92
32777--32839	31	2.1	30	84	3	81	26	3	6	63	1.34
33098--33161	32	2.0	32	85	11	87	53	3	10	32	1.52
39854--39911	29	2.0	30	86	3	82	29	6	15	48	1.71
40050--40124	31	2.4	30	80	6	78	45	9	9	36	1.69
40466--40582	57	2.1	57	100	0	234	30	30	19	18	1.96
41972--42035	32	2.0	32	81	0	74	23	1	3	71	1.08
43450--43500	15	3.5	15	74	15	52	64	5	0	29	1.17
51336--51380	23	2.0	23	86	0	63	35	20	13	31	1.91
54073--54097	6	4.2	6	100	0	50	32	20	0	48	1.50
57935--58037	25	4.3	23	80	11	93	10	30	20	38	1.86
57953--58038	25	3.5	25	85	6	106	11	30	20	37	1.89
57935--58047	48	2.4	47	81	14	126	12	28	20	38	1.89
60122--60149	5	5.6	5	100	0	56	0	0	39	60	0.97
76126--76187	28	2.2	28	88	0	88	27	9	30	32	1.89
76255--76587	29	11.5	29	72	14	199	32	4	28	35	1.76
76193--76576	59	6.7	59	77	8	361	32	4	28	34	1.77
76216--76476	115	2.3	115	91	3	411	33	5	27	33	1.79
76257--76630	173	2.2	172	83	6	452	32	4	28	34	1.77
76219--76625	59	7.0	58	78	8	241	33	4	27	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76372--76626	87	2.9	86	75	10	243	33	4	26	35	1.76
85462--85634	40	4.3	39	83	5	204	40	10	25	23	1.86
86325--86373	21	2.3	21	85	0	71	28	20	24	26	1.99
91694--91744	22	2.3	22	80	6	59	50	7	0	41	1.31
92355--92390	2	18.0	2	100	0	72	50	0	0	50	1.00
99581--99691	57	1.9	58	87	5	163	26	21	16	36	1.94
99578--99706	57	2.3	58	82	8	158	27	22	13	36	1.92
104459--104528	35	2.0	35	85	0	95	47	12	28	11	1.77
105528--105563	15	2.4	15	95	0	63	55	0	19	25	1.43
108275--108446	62	3.0	56	86	10	247	44	13	8	34	1.73
113255--113407	56	2.7	56	81	3	155	48	13	6	32	1.67
125624--125653	7	4.3	7	91	0	51	83	0	16	0	0.65
125624--125657	14	2.5	13	90	4	50	79	0	20	0	0.73
127471--127665	98	2.0	97	89	5	295	39	13	15	31	1.86
127922--128262	28	11.6	31	64	18	131	38	3	24	33	1.73
127922--128276	59	6.1	57	78	9	283	38	3	24	33	1.74
127917--128276	118	3.1	116	79	9	331	38	4	25	32	1.75
127991--128276	119	2.4	119	79	11	306	39	3	23	33	1.73
129397--129432	3	12.0	3	87	0	54	38	0	0	61	0.96
129398--129434	9	4.1	9	92	0	65	40	0	0	59	0.97
129974--130016	17	2.5	17	100	0	86	25	16	25	32	1.96
130114--130164	17	3.0	17	85	0	66	52	3	0	43	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135870--136222	175	2.0	176	93	2	613	32	11	7	49	1.66
137950--138016	15	4.5	15	70	12	57	34	4	7	53	1.49
161376--161400	11	2.3	11	100	0	50	56	12	16	16	1.68
164491--164536	17	2.6	17	86	6	56	54	2	0	43	1.12
164502--164542	17	2.4	17	79	0	55	46	0	0	53	1.00
164561--164599	14	2.8	14	84	0	51	25	0	12	61	1.31
178242--178281	14	2.7	15	84	3	55	47	0	0	52	1.00
178241--178282	22	2.0	22	90	4	68	45	0	0	54	0.99
183318--183352	14	2.5	14	85	0	52	62	2	0	34	1.10
186310--186356	24	2.0	24	100	0	94	59	8	8	23	1.54
191548--191587	15	2.6	16	74	25	50	55	0	5	40	1.22
192493--192684	60	3.2	58	83	4	215	28	16	8	46	1.75
194231--194267	18	2.1	18	89	0	56	48	0	27	24	1.51
195279--195358	23	3.5	22	93	3	124	38	26	21	13	1.90
195275--195396	23	5.4	23	84	10	121	40	22	22	13	1.89
202004--202039	18	2.1	18	89	5	56	41	0	25	33	1.55
202340--202376	18	2.1	18	89	0	56	48	0	27	24	1.51
205906--206011	46	2.3	45	77	19	112	37	0	3	57	1.23
205902--205992	38	2.4	36	82	12	103	38	1	4	56	1.27
208921--208984	20	3.0	22	82	13	71	70	15	1	12	1.24
208935--208984	12	4.5	11	76	13	50	72	16	2	10	1.21
208942--209038	23	4.3	22	83	7	97	69	16	5	9	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208966--209038	21	3.5	20	80	9	67	69	16	5	8	1.32
208935--209099	22	7.5	22	79	6	122	68	18	5	7	1.33
209811--209843	11	3.1	11	91	4	50	63	0	0	36	0.95
213512--213554	19	2.3	19	84	8	52	58	4	0	37	1.19
215953--216001	20	2.7	18	77	22	57	51	4	2	42	1.32
218594--218630	19	1.9	19	94	0	65	67	0	2	29	1.04
218592--218641	10	5.0	10	80	7	57	68	2	2	28	1.12
237037--237063	3	9.0	3	100	0	54	33	0	0	66	0.92
241210--241275	3	22.0	3	96	0	123	66	1	0	31	1.01

Tables:   1

The End!