genome.fa.s15086.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015086.1 Kokia drynarioides strain JFW-HI SEQ_130130, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100172

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4343--4368	13	2.0	13	100	0	52	15	30	0	53	1.42
6684--6713	6	4.8	6	92	8	51	36	0	63	0	0.95
6680--6713	13	2.8	13	86	13	54	41	0	58	0	0.98
6752--6825	30	2.5	30	93	2	123	45	0	0	54	1.00
6786--6828	21	2.0	21	86	8	61	48	0	0	51	1.00
10367--10400	15	2.3	15	100	0	68	50	20	5	23	1.70
16823--16977	12	12.5	12	70	16	93	38	2	3	55	1.30
16834--16921	18	4.5	18	76	18	95	39	2	0	57	1.11
16834--16944	6	18.2	6	73	13	84	39	1	1	56	1.20
17614--17683	6	12.2	6	75	14	58	52	0	0	47	1.00
17616--17676	21	2.8	20	79	18	68	50	0	0	49	1.00
17616--17684	3	23.0	3	73	5	50	53	0	0	46	1.00
17616--17680	30	2.2	30	88	5	96	52	0	0	47	1.00
17622--17671	24	2.1	24	88	7	75	52	0	0	48	1.00
18095--18148	24	2.2	25	83	9	67	18	14	48	18	1.82
18761--19146	29	13.1	29	74	9	235	32	24	1	40	1.66
18780--19003	30	7.6	30	70	6	109	29	22	2	45	1.66
18838--19005	30	5.7	30	71	8	119	29	22	2	45	1.67
18780--19003	59	3.8	59	82	5	247	29	22	2	45	1.66
18786--19033	59	4.2	59	82	4	205	30	22	2	44	1.66
19071--19326	29	8.8	29	79	9	152	32	27	7	32	1.85
19184--19326	30	4.9	28	77	13	121	29	30	10	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19183--19326	59	2.4	58	86	8	193	29	29	10	29	1.90
25304--25333	15	1.9	16	93	6	53	53	13	20	13	1.72
33321--33354	17	2.0	17	88	0	50	44	11	2	41	1.56
33949--33990	16	2.6	16	81	7	50	66	4	9	19	1.38
34719--34768	22	2.5	20	84	12	66	54	2	0	44	1.11
34721--34774	21	2.5	20	85	8	63	55	1	0	42	1.10
34682--34876	71	2.8	68	73	9	176	45	6	2	46	1.42
34724--34789	22	3.1	21	80	8	62	51	1	1	45	1.19
39067--39126	31	2.0	31	86	3	86	31	6	1	60	1.33
39496--39557	22	2.7	22	80	7	61	43	1	0	54	1.09
39520--39559	15	2.5	16	84	8	55	35	2	0	62	1.09
39496--39560	24	2.7	25	79	11	66	41	1	0	56	1.08
44520--44544	7	3.6	7	100	0	50	28	0	44	28	1.55
51956--52034	39	2.0	39	92	0	131	34	13	17	34	1.90
60798--61049	132	1.9	132	84	1	335	20	24	25	29	1.99
60904--61234	158	2.1	158	87	1	493	22	24	24	28	1.99
64557--65567	78	12.9	78	78	2	898	25	17	30	26	1.98
64555--65541	39	25.3	39	67	13	296	25	17	30	26	1.97
65376--65566	39	4.9	39	68	7	127	25	20	30	23	1.98
65557--65841	41	6.9	41	82	6	310	32	17	17	31	1.93
65557--65841	83	3.5	81	82	6	333	32	17	17	31	1.93
65557--65841	124	2.3	121	84	7	376	32	17	17	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65604--65834	123	1.9	124	88	2	358	32	16	18	32	1.93
67033--67125	6	14.5	6	70	24	57	4	15	0	80	0.86
67018--67125	21	5.1	20	81	17	89	3	16	0	78	0.94
67017--67119	54	1.9	54	81	15	124	3	17	0	77	0.97
67041--67109	13	5.3	13	81	10	79	1	17	0	81	0.77
67041--67111	33	2.1	34	84	10	92	1	16	0	81	0.76
67048--67108	4	14.8	4	73	13	52	1	18	0	80	0.80
67041--67125	26	3.3	25	76	18	86	3	15	0	81	0.83
68044--68082	10	3.7	10	86	10	51	7	0	5	87	0.68
69568--69605	19	2.0	19	89	0	58	26	21	21	31	1.98
77059--77287	80	2.9	80	91	0	377	22	17	25	34	1.95
79350--79399	23	2.1	24	85	10	68	6	18	28	48	1.71
81930--82029	38	2.7	38	76	7	105	32	27	14	27	1.94
84657--84721	17	3.9	17	79	4	69	16	21	13	47	1.82
85852--85946	36	2.6	36	96	1	172	27	33	18	20	1.96
85852--85967	36	3.2	36	91	1	151	27	31	18	22	1.97
86855--86993	69	2.0	69	98	0	269	20	21	7	49	1.74
88358--88432	24	3.1	24	84	3	89	56	8	10	25	1.61
90350--90424	24	3.1	24	86	0	105	56	9	10	24	1.63
90805--91261	158	2.9	157	86	0	608	21	23	24	30	1.99
94440--94480	12	3.4	12	78	21	50	56	0	4	39	1.21
97260--97563	30	10.3	29	82	10	271	39	0	22	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97325--97559	118	2.0	118	88	3	348	38	0	23	37	1.58
97324--97563	89	2.7	87	86	6	340	39	0	22	37	1.58
97319--97564	30	8.3	29	84	9	309	39	0	23	36	1.58

Tables:   1

The End!