genome.fa.s15087.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015087.1 Kokia drynarioides strain JFW-HI SEQ_130131, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183326

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1092--1125	18	1.9	17	94	5	59	67	5	0	26	1.13
3043--3144	48	2.1	48	94	0	177	30	7	20	41	1.81
5396--5440	23	2.0	21	87	12	63	53	4	0	42	1.21
10972--11014	20	2.2	20	100	0	86	34	18	0	46	1.50
35549--35577	3	9.7	3	100	0	58	34	65	0	0	0.93
37800--37832	17	1.9	17	93	0	57	30	3	12	54	1.52
51976--52026	21	2.4	21	96	0	93	31	11	15	41	1.83
52338--52395	2	29.0	2	79	6	64	46	8	0	44	1.34
52338--52394	16	3.6	16	83	4	71	47	8	0	43	1.34
58048--58099	26	2.0	26	84	0	68	51	3	11	32	1.56
58157--58216	28	2.1	30	84	9	81	58	3	0	38	1.15
58169--58223	28	1.9	29	85	10	78	56	3	0	40	1.17
58272--58311	19	2.1	19	95	0	71	45	10	2	42	1.51
71550--71596	14	3.4	14	77	16	53	46	2	4	46	1.34
71624--71681	24	2.5	24	78	13	66	50	0	1	48	1.11
71867--71932	26	2.6	26	95	2	116	34	31	1	31	1.67
71857--71942	13	6.7	13	77	2	75	39	30	2	27	1.69
79207--79260	25	2.2	25	100	0	108	18	24	3	53	1.60
84089--84200	11	10.2	11	71	2	73	22	0	9	66	1.26
84911--84966	19	2.8	21	76	15	64	50	7	0	42	1.30
84958--85011	21	2.6	21	79	8	56	51	5	7	35	1.53
85120--85185	25	2.4	27	80	14	82	39	6	0	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85142--85191	25	2.0	25	96	0	91	42	4	0	54	1.19
86013--86043	16	1.9	16	93	0	53	54	6	3	35	1.42
89247--89281	16	2.2	16	94	0	61	74	14	5	5	1.19
91005--91224	43	5.2	43	75	8	225	26	26	19	27	1.99
92838--92900	19	3.3	19	72	18	58	25	0	4	69	1.07
94466--94527	30	2.1	30	100	0	124	43	19	16	20	1.88
95732--95774	22	1.9	23	85	4	61	44	4	2	48	1.36
96987--97243	41	6.3	41	83	0	300	16	29	20	33	1.94
96994--97226	123	1.9	123	88	0	349	16	30	20	32	1.95
98592--98686	25	3.8	25	92	2	147	44	17	25	12	1.84
98699--98767	22	3.1	22	82	2	84	42	21	20	15	1.89
100708--100758	25	2.0	25	85	7	68	43	15	0	41	1.47
101001--101046	22	2.2	20	84	7	56	36	4	0	58	1.18
105910--105980	34	2.1	35	91	2	117	39	0	1	59	1.06
105910--105986	16	4.6	17	85	7	113	40	0	1	58	1.06
105914--105994	17	4.8	16	81	13	74	41	0	2	55	1.13
105959--105993	11	3.2	11	87	0	52	42	0	2	54	1.15
107898--108334	30	14.7	29	73	15	299	34	31	4	29	1.77
107900--108341	59	7.5	59	84	7	447	33	32	4	29	1.78
107916--108340	118	3.6	118	85	7	506	33	32	4	29	1.78
108016--108339	29	11.0	28	73	13	251	32	33	4	29	1.79
115993--116031	17	2.3	17	90	0	60	15	10	25	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121524--121569	22	2.2	20	84	7	56	71	4	6	17	1.24
132181--132307	9	13.4	9	66	15	51	59	1	2	36	1.20
132180--132229	10	5.1	10	72	13	50	66	2	0	32	1.03
132177--132242	28	2.4	28	82	12	82	65	1	0	33	1.02
145825--145889	30	2.1	31	86	8	89	49	15	13	21	1.79
145979--146034	27	2.1	27	86	0	76	17	35	1	44	1.60
146819--146873	27	2.1	26	89	3	83	43	0	36	20	1.52
146957--147023	30	2.2	30	84	7	82	19	11	17	50	1.77
154686--154886	101	2.0	101	96	1	368	30	11	23	34	1.90
155641--155665	8	3.1	8	100	0	50	88	0	12	0	0.53
155922--155977	29	1.9	29	85	7	78	55	7	0	37	1.27
160828--161090	131	2.0	131	99	0	517	36	14	13	35	1.85
162234--162346	43	2.6	43	80	5	129	23	20	18	37	1.94
162240--162321	21	3.9	21	77	6	76	21	17	21	39	1.93
162260--162325	21	3.1	21	80	4	87	18	19	24	37	1.93
164914--164959	23	1.9	25	86	8	69	30	0	2	67	1.03
180128--180319	96	2.0	96	84	8	248	36	14	20	29	1.91
180699--180844	29	5.0	29	87	3	204	33	3	28	34	1.74
180706--180844	59	2.4	58	87	2	197	34	2	27	35	1.72
181209--181271	28	2.2	28	82	2	72	28	9	30	31	1.89
181221--181385	28	5.8	29	67	18	87	31	6	29	33	1.82
181371--181688	30	10.7	30	78	11	289	33	2	26	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181371--181707	59	5.7	58	86	4	406	35	2	26	36	1.71
181343--181723	30	12.9	29	76	12	257	33	3	27	36	1.73
182866--182902	3	12.0	3	88	5	56	32	2	0	64	1.07

Tables:   1

The End!