genome.fa.s15089.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015089.1 Kokia drynarioides strain JFW-HI SEQ_130133, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  302494

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5287--5334	20	2.3	21	79	13	55	41	8	12	37	1.73
5517--5567	11	4.5	11	80	9	50	76	1	0	21	0.88
5523--5567	18	2.7	18	80	16	60	75	2	0	22	0.91
5536--5565	16	1.9	15	93	6	51	73	0	0	26	0.84
5894--5941	22	2.2	22	92	0	78	22	43	8	25	1.81
13233--13258	5	5.2	5	100	0	52	19	0	61	19	1.35
22403--22465	11	5.1	12	79	12	58	52	0	0	47	1.00
22391--22465	22	3.1	23	77	14	73	50	0	0	49	1.00
22418--22461	15	3.3	15	79	20	53	54	0	0	45	0.99
23544--23590	22	2.1	22	92	0	76	34	19	8	38	1.82
24749--24802	24	2.2	25	78	12	60	20	22	5	51	1.67
26718--26748	11	2.8	11	100	0	62	54	9	0	35	1.33
29935--29972	20	2.0	20	89	5	60	28	5	39	26	1.78
38475--38607	69	1.9	69	85	0	185	39	16	16	27	1.90
38808--38843	14	2.6	14	86	0	54	47	2	2	47	1.31
47153--47230	39	2.0	39	87	5	113	30	16	14	38	1.88
47202--47261	31	1.9	31	90	6	95	30	21	15	33	1.94
47222--47400	45	4.0	45	82	5	220	30	21	12	35	1.91
47247--47320	14	4.9	15	71	15	55	29	20	10	39	1.86
47233--47424	45	4.3	45	81	5	210	28	20	14	36	1.92
49006--49144	58	2.5	54	76	9	134	28	7	11	52	1.65
50093--50178	6	15.2	6	75	16	85	41	0	3	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50096--50180	17	5.1	17	83	5	111	38	0	3	57	1.16
50093--50178	40	2.2	39	89	6	129	41	0	3	54	1.17
50096--50178	23	3.9	22	76	19	79	39	0	3	56	1.17
50548--50580	16	2.1	17	88	11	52	42	24	9	24	1.83
51475--51515	20	2.0	20	85	0	55	4	4	4	85	0.83
53353--53617	30	8.9	29	73	14	211	36	28	1	33	1.65
65728--66017	39	7.4	38	74	11	167	24	27	19	28	1.98
65726--66018	117	2.5	117	77	6	306	23	28	19	28	1.98
65999--66036	18	2.1	18	100	0	76	21	42	10	26	1.85
66056--66301	78	3.2	78	81	2	253	23	32	19	24	1.97
66015--66266	117	2.2	117	80	1	290	23	33	19	24	1.97
66015--66266	39	6.5	39	76	2	211	23	33	19	24	1.97
66457--66622	86	1.9	86	83	7	212	38	15	20	25	1.92
67125--67166	10	4.2	10	100	0	84	38	0	0	61	0.96
67526--67558	16	2.1	17	88	11	52	45	24	6	24	1.75
68778--68835	30	1.9	30	93	6	100	36	32	5	25	1.78
68835--69008	30	5.8	29	83	8	206	37	28	0	33	1.62
68834--69012	60	3.0	58	85	8	243	37	28	0	32	1.62
70046--70410	198	1.8	198	87	1	543	34	15	16	33	1.90
74352--74462	54	2.1	54	98	0	213	43	13	26	17	1.86
83754--83911	59	2.7	57	78	5	172	24	15	10	48	1.77
87644--87674	12	2.6	12	94	0	53	3	22	35	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98079--98141	24	2.7	23	82	2	81	28	12	17	41	1.86
104929--105003	32	2.3	32	79	6	80	37	9	16	37	1.80
106383--106485	52	2.0	52	96	0	188	46	19	9	24	1.79
109505--109580	31	2.5	31	75	0	80	27	7	14	50	1.71
110161--110187	3	9.0	3	100	0	54	33	0	0	66	0.92
113141--113186	21	2.2	21	81	14	51	45	6	0	47	1.28
118609--118653	16	2.8	16	82	0	54	31	2	8	57	1.41
121611--121655	6	7.5	6	89	0	63	22	31	0	46	1.52
136748--137055	133	2.3	128	84	9	372	26	29	12	30	1.93
138776--138820	20	2.3	19	84	3	54	35	4	2	57	1.31
139718--139764	21	2.2	21	77	7	51	40	0	4	55	1.19
139754--139817	23	2.8	23	97	2	121	56	0	0	43	0.99
146291--146373	40	2.1	39	95	2	148	49	16	6	27	1.69
149204--149292	7	13.0	7	77	4	74	35	25	19	19	1.95
149204--149292	21	4.3	21	80	4	101	35	25	19	19	1.95
156015--156079	32	2.1	31	94	2	112	53	16	10	18	1.71
157046--157086	17	2.4	17	87	0	55	56	12	9	21	1.65
157483--157524	15	2.8	16	78	14	52	2	30	0	66	1.04
162450--162719	29	9.3	29	73	18	199	30	5	32	32	1.80
162400--162720	59	5.5	59	82	8	345	31	5	30	32	1.81
162427--162720	117	2.5	118	85	6	375	30	6	30	31	1.82
163610--163652	18	2.4	18	92	0	68	2	39	0	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163610--163653	9	4.9	9	86	5	54	2	40	0	56	1.11
163639--163688	25	1.9	26	84	8	66	4	24	0	72	1.02
165079--165111	15	2.3	15	89	5	50	84	3	9	3	0.82
171772--171818	24	2.0	24	91	0	76	53	2	0	44	1.12
172163--172194	16	1.9	17	93	6	57	12	18	6	62	1.50
188274--188316	17	2.7	17	82	13	56	13	13	0	72	1.13
189101--189149	2	24.5	2	100	0	98	51	0	0	48	1.00
201193--201217	12	2.1	12	100	0	50	48	8	8	36	1.62
205869--205898	16	1.9	15	93	6	51	0	10	43	46	1.37
210880--210924	23	2.0	23	86	0	63	51	2	0	46	1.13
210890--210937	20	2.5	20	93	6	82	52	0	0	47	1.00
216231--216267	18	2.1	18	100	0	74	16	24	10	48	1.77
225026--225141	60	1.9	60	81	10	139	46	6	9	37	1.61
227509--227547	18	2.1	19	85	4	53	35	2	0	61	1.10
237871--237905	18	1.9	18	94	0	61	68	0	31	0	0.90
238690--238833	60	2.4	60	94	2	245	31	16	9	42	1.81
243585--243747	79	2.0	80	92	1	274	34	31	9	23	1.88
246342--246382	20	2.0	20	85	4	55	60	12	7	19	1.54
246695--246752	26	2.4	25	77	13	59	37	8	6	46	1.61
251048--251084	15	2.3	17	81	13	51	13	29	0	56	1.37
261017--261058	20	2.0	21	86	4	59	80	2	16	0	0.81
284856--284895	19	2.2	19	86	4	55	37	5	2	55	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285287--285318	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1

The End!