genome.fa.s15092.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015092.1 Kokia drynarioides strain JFW-HI SEQ_130136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93561

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7106--7180	36	2.1	36	94	0	132	33	29	22	14	1.94
7889--8171	29	9.8	28	77	9	214	33	27	4	33	1.77
7888--8173	58	4.9	58	81	7	287	34	27	4	33	1.76
7926--8173	87	2.9	87	83	7	306	33	28	4	34	1.76
7923--8173	29	8.7	29	81	9	262	33	28	3	34	1.76
7889--8186	87	3.4	87	78	11	286	33	27	4	34	1.77
20894--20959	17	3.7	17	75	11	60	37	4	7	50	1.52
22935--22980	23	2.0	23	95	0	83	45	19	0	34	1.51
22937--23334	29	13.8	28	81	12	400	34	27	3	34	1.73
22936--23334	59	6.9	56	82	12	393	34	27	3	34	1.73
22931--23334	88	4.7	86	85	9	445	34	27	3	34	1.73
28286--28323	11	3.5	11	82	13	51	63	2	0	34	1.09
28286--28323	17	2.3	17	90	4	60	63	2	0	34	1.09
28286--28346	22	2.7	22	85	7	70	60	4	0	34	1.18
31526--31558	10	3.4	10	91	4	50	30	0	0	69	0.88
31614--31658	20	2.3	20	84	3	56	37	2	2	57	1.23
31628--31666	20	2.0	20	95	5	71	35	2	0	61	1.10
34039--34091	24	2.3	24	80	6	65	41	0	0	58	0.98
34052--34085	15	2.2	16	89	5	52	32	0	0	67	0.91
34070--34139	30	2.3	29	75	15	70	42	1	4	51	1.30
35157--35185	2	14.5	2	100	0	58	48	0	0	51	1.00
37640--37678	18	2.1	19	86	13	55	56	2	0	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39316--39423	46	2.3	46	87	6	148	36	4	21	37	1.74
50660--50704	17	2.8	15	81	15	54	37	0	4	57	1.19
56216--56245	15	1.9	16	93	6	53	60	6	6	26	1.47
59337--59390	18	3.1	18	77	17	69	53	3	5	37	1.42
59337--59407	21	3.8	20	75	22	66	53	2	5	38	1.39
61226--61634	204	2.0	204	100	0	818	33	22	22	21	1.97
64100--64210	57	2.0	56	82	5	134	37	16	8	37	1.78
67947--68000	20	2.7	20	91	0	90	37	14	3	44	1.63
68154--68216	20	3.2	20	73	10	58	38	6	4	50	1.49
68271--68326	20	2.8	20	75	0	58	37	7	7	48	1.58
68320--68509	20	9.5	20	72	10	104	41	13	5	40	1.67
68362--68514	60	2.6	59	79	5	155	41	13	3	41	1.60
68362--68492	40	3.3	39	87	4	181	44	12	3	39	1.59
68623--68664	20	2.1	20	90	0	66	45	11	2	40	1.54
70071--70112	21	2.0	21	100	0	84	42	28	9	19	1.82
71024--71325	149	2.0	149	100	0	604	35	24	12	27	1.92
75730--75986	128	2.0	128	96	0	478	23	29	14	32	1.94
80155--80217	24	2.6	24	89	0	99	26	14	7	50	1.70
82155--82209	24	2.3	24	87	0	74	27	14	9	49	1.73
82286--82310	13	1.9	13	100	0	50	40	16	4	40	1.67
84795--84933	69	2.0	69	97	0	260	38	19	12	29	1.88
85957--85986	15	2.0	15	93	0	51	43	26	16	13	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86002--86278	43	6.5	43	84	2	299	32	25	18	23	1.97
86002--86278	86	3.2	86	83	3	344	32	25	18	23	1.97
86002--86278	129	2.2	128	84	4	362	32	25	18	23	1.97
86250--86309	29	2.0	30	93	3	104	41	28	11	18	1.85
88477--88512	17	2.1	17	100	0	72	30	19	22	27	1.98
90308--90338	10	2.9	11	90	9	55	64	0	9	25	1.24
90988--91026	6	6.5	6	87	0	51	46	0	30	23	1.53
92997--93043	24	2.0	24	91	0	76	34	10	46	8	1.69
93469--93513	20	2.2	20	80	11	56	53	0	4	42	1.21
93473--93513	19	2.1	20	86	4	57	53	0	4	41	1.22

Tables:   1

The End!