Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015094.1 Kokia drynarioides strain JFW-HI SEQ_130138, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 29983
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.33
Warning! 119 characters in sequence are not A, C, G, or T
Found at i:2616 original size:26 final size:25
Alignment explanation
Indices: 2587--2638 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
2577 ATATATATAT
2587 ATAT-AACAATAACAAAACAATGTTGA
1 ATATCAACAA-AA-AAAACAATGTTGA
* *
2613 ATATCACCAAAAAAAACAGTGTTGA
1 ATATCAACAAAAAAAACAATGTTGA
2638 A
1 A
2639 GATGTGGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 13 0.57
26 6 0.26
27 4 0.17
ACGTcount: A:0.56, C:0.13, G:0.10, T:0.21
Consensus pattern (25 bp):
ATATCAACAAAAAAAACAATGTTGA
Found at i:2787 original size:23 final size:23
Alignment explanation
Indices: 2761--2804 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
2751 TGAATTGATC
2761 AATTTT-AATCTTTTTATTTTTCG
1 AATTTTAAAT-TTTTTATTTTTCG
*
2784 AATTTTAAATTTTTTTTTTTT
1 AATTTTAAATTTTTTATTTTT
2805 AGGTACAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (23 bp):
AATTTTAAATTTTTTATTTTTCG
Found at i:2787 original size:31 final size:31
Alignment explanation
Indices: 2727--2787 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
2717 TTTTAATTTA
*
2727 ATCAATTTTAGTTTTTATATCTTTTGAATTG
1 ATCAATTTTAATTTTTATATCTTTTGAATTG
2758 ATCAATTTTAATCTTTT-TAT-TTTTCGAATT
1 ATCAATTTTAAT-TTTTATATCTTTT-GAATT
2788 TTAAATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 4 0.15
31 19 0.70
32 4 0.15
ACGTcount: A:0.26, C:0.08, G:0.07, T:0.59
Consensus pattern (31 bp):
ATCAATTTTAATTTTTATATCTTTTGAATTG
Found at i:10950 original size:20 final size:20
Alignment explanation
Indices: 10919--10963 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
10909 GCTGTATATA
*
10919 AATTCAAAAAAATGAA-ATATT
1 AATTTAAAAAAA-GAATA-ATT
10940 AATTTAAAAAAAGAATAATT
1 AATTTAAAAAAAGAATAATT
10960 AATT
1 AATT
10964 CGATAAATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (20 bp):
AATTTAAAAAAAGAATAATT
Found at i:17193 original size:57 final size:56
Alignment explanation
Indices: 17124--17400 Score: 256
Period size: 57 Copynumber: 4.8 Consensus size: 56
17114 ACTCGGGGGA
*
17124 AAAATAGTAATTTTTGCAAGTTTCGGGATAAAAAATGGAATTTTGGAAGTTTGGGGTC
1 AAAAT-GTAATTTTTGGAAGTTTCGGG-TAAAAAATGGAATTTTGGAAGTTTGGGGTC
* *
17182 AAAATGTAATTTTTGGAAATTTCGAGGTCAAAAATGGAATTTTGGAAGTTTGGGGTC
1 AAAATGTAATTTTTGGAAGTTTCG-GGTAAAAAATGGAATTTTGGAAGTTTGGGGTC
* ** * * * * *
17239 AAAATGGAATTTTTAAAAGTTTGGGGGTAAAAAATGAAATTTTTAGAAGTTTGAGAGTA
1 AAAATGTAATTTTTGGAAGTTT-CGGGTAAAAAATGGAA-TTTTGGAAGTTTG-GGGTC
** *** *
17298 AAAATGTAATTTTTGGAAGTTT-GAGGCCAAAAATGGAATTATCAAAAGTTTAGGGG-A
1 AAAATGTAATTTTTGGAAGTTTCG-GGTAAAAAATGGAATT-TTGGAAGTTT-GGGGTC
* *
17355 AAAATGTAATTTTTAGAAG-TTCAGGGT-AAAAATGTAATTTTTGGAA
1 AAAATGTAATTTTTGGAAGTTTC-GGGTAAAAAATGGAA-TTTTGGAA
17401 AGTATAGGGA
Statistics
Matches: 181, Mismatches: 28, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
56 14 0.08
57 102 0.56
58 42 0.23
59 23 0.13
ACGTcount: A:0.38, C:0.04, G:0.24, T:0.34
Consensus pattern (56 bp):
AAAATGTAATTTTTGGAAGTTTCGGGTAAAAAATGGAATTTTGGAAGTTTGGGGTC
Found at i:17320 original size:29 final size:29
Alignment explanation
Indices: 17123--17400 Score: 230
Period size: 29 Copynumber: 9.7 Consensus size: 29
17113 TACTCGGGGG
* *
17123 AAAAATAGTAATTTTTGCAAGTTTCG-GGAT
1 AAAAAT-GTAATTTTTGGAAGTTT-GAGGGT
*
17153 AAAAAATGGAA-TTTTGGAAGTTTG-GGGT
1 -AAAAATGTAATTTTTGGAAGTTTGAGGGT
* *
17181 CAAAATGTAATTTTTGGAAATTTCGA-GGT
1 AAAAATGTAATTTTTGGAAGTTT-GAGGGT
*
17210 CAAAAATGGAA-TTTTGGAAGTTTG-GGGT
1 -AAAAATGTAATTTTTGGAAGTTTGAGGGT
* * ** *
17238 CAAAATGGAATTTTTAAAAGTTTGGGGGT
1 AAAAATGTAATTTTTGGAAGTTTGAGGGT
* * *
17267 AAAAAATGAAATTTTTAGAAGTTTGAGAGT
1 -AAAAATGTAATTTTTGGAAGTTTGAGGGT
**
17297 AAAAATGTAATTTTTGGAAGTTTGAGGCC
1 AAAAATGTAATTTTTGGAAGTTTGAGGGT
* * *** *
17326 AAAAATGGAATTATCAAAAGTTT-AGGGG
1 AAAAATGTAATTTTTGGAAGTTTGAGGGT
* *
17354 AAAAATGTAATTTTTAGAAG-TTCAGGGT
1 AAAAATGTAATTTTTGGAAGTTTGAGGGT
17382 AAAAATGTAATTTTTGGAA
1 AAAAATGTAATTTTTGGAA
17401 AGTATAGGGA
Statistics
Matches: 203, Mismatches: 35, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
27 19 0.09
28 71 0.35
29 72 0.35
30 35 0.17
31 6 0.03
ACGTcount: A:0.38, C:0.04, G:0.24, T:0.34
Consensus pattern (29 bp):
AAAAATGTAATTTTTGGAAGTTTGAGGGT
Found at i:20281 original size:30 final size:30
Alignment explanation
Indices: 20225--20630 Score: 313
Period size: 30 Copynumber: 13.7 Consensus size: 30
20215 CCCGGGGGGC
* * *
20225 AAAATGGTAATTTTGGGAAAATTCGAGGTTTA
1 AAAATGG-AATTTTTGG-AAGTTCGAGGGTTA
*
20257 AAAATGGAATTTTTAGACA-TTCGAGGG--A
1 AAAATGGAATTTTTGGA-AGTTCGAGGGTTA
* * *
20285 AAAATGGAATTTTTGGAAATTTCGA-GATCA
1 AAAATGGAATTTTTGG-AAGTTCGAGGGTTA
* *
20315 AAAATGGCATTTTTGGAAGTTC-AGGGGTA
1 AAAATGGAATTTTTGGAAGTTCGAGGGTTA
*
20344 AAATTGGAATTTTTGGAAGTTTCG-GGGTTA
1 AAAATGGAATTTTTGGAAG-TTCGAGGGTTA
* * * *
20374 AAAATGGGATTTTTAGAAGTT-TAGGGGTA
1 AAAATGGAATTTTTGGAAGTTCGAGGGTTA
* * **
20403 GAAATGGAATTTTTGGAAGTTTTG-GGGTCG
1 AAAATGGAATTTTTGGAAG-TTCGAGGGTTA
* * * *
20433 AAAATAGCATTTTTGGAAGTT-TAGGGGTA
1 AAAATGGAATTTTTGGAAGTTCGAGGGTTA
* * *
20462 AAAATGGAATTTTTGAAAGTTTC-ATGGTCA
1 AAAATGGAATTTTTGGAAG-TTCGAGGGTTA
* *
20492 AAAATGGGATTTTTGGAAGTTTGAGGG-TA
1 AAAATGGAATTTTTGGAAGTTCGAGGGTTA
*
20521 AAAATGGAATTTTTGGAAGTTTTG-GGGTTA
1 AAAATGGAATTTTTGGAAG-TTCGAGGGTTA
* *
20551 AAAAT-GAGATTTTTGGAAGTT-TAGGGGT-
1 AAAATGGA-ATTTTTGGAAGTTCGAGGGTTA
*
20579 AAAATGGAATTTTTGGAAGTTTCG-GGGTCA
1 AAAATGGAATTTTTGGAAG-TTCGAGGGTTA
*
20609 AAAATGGGATTTTTGGATAGTT
1 AAAATGGAATTTTTGGA-AGTT
20631 TAGGGACCAA
Statistics
Matches: 300, Mismatches: 50, Indels: 50
0.75 0.12 0.12
Matches are distributed among these distances:
28 35 0.12
29 113 0.38
30 135 0.45
31 10 0.03
32 7 0.02
ACGTcount: A:0.33, C:0.03, G:0.29, T:0.35
Consensus pattern (30 bp):
AAAATGGAATTTTTGGAAGTTCGAGGGTTA
Found at i:20309 original size:59 final size:59
Alignment explanation
Indices: 20284--20635 Score: 501
Period size: 59 Copynumber: 6.0 Consensus size: 59
20274 CATTCGAGGG
* * * * *
20284 AAAAATGGAATTTTTGGAAATTTCGAGATCAAAAATGGCATTTTTGGAAGTTCAGGGGT
1 AAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGGGT
* * *
20343 AAAATTGGAATTTTTGGAAGTTTCGGGGTTAAAAATGGGATTTTTAGAAGTTTAGGGGT
1 AAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGGGT
* * * * *
20402 AGAAATGGAATTTTTGGAAGTTTTGGGGTCGAAAATAGCATTTTTGGAAGTTTAGGGGT
1 AAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGGGT
* **
20461 AAAAATGGAATTTTTGAAAGTTTCATGGTCAAAAATGGGATTTTTGGAAGTTT-GAGGGT
1 AAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAG-GGGT
* * *
20520 AAAAATGGAATTTTTGGAAGTTTTGGGGTTAAAAATGAGATTTTTGGAAGTTTAGGGGT
1 AAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGGGT
20579 -AAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGGGATTTTTGGATAGTTTAGGG
1 AAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGGGATTTTTGGA-AGTTTAGGG
20636 ACCAAGGTAA
Statistics
Matches: 257, Mismatches: 33, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
58 45 0.18
59 211 0.82
60 1 0.00
ACGTcount: A:0.32, C:0.03, G:0.30, T:0.36
Consensus pattern (59 bp):
AAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGGGATTTTTGGAAGTTTAGGGGT
Found at i:22300 original size:15 final size:15
Alignment explanation
Indices: 22280--22350 Score: 72
Period size: 15 Copynumber: 4.7 Consensus size: 15
22270 GTTTGGAATC
22280 TTGGGCCATTTGTAA
1 TTGGGCCATTTGTAA
*
22295 TTGGGCCATCTGTAA
1 TTGGGCCATTTGTAA
*
22310 TTGGGTCATTT-TAAA
1 TTGGGCCATTTGT-AA
*** *
22325 TTTAACCATTAGTAA
1 TTGGGCCATTTGTAA
22340 TTGGGCCATTT
1 TTGGGCCATTT
22351 AGATCTGTAC
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
14 1 0.02
15 40 0.95
16 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (15 bp):
TTGGGCCATTTGTAA
Found at i:22410 original size:17 final size:17
Alignment explanation
Indices: 22388--22444 Score: 80
Period size: 17 Copynumber: 3.4 Consensus size: 17
22378 TTGGATATTT
22388 TAAATTTAAATTTTAAA
1 TAAATTTAAATTTTAAA
*
22405 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTTAAA
*
22422 TAAACTT-AATTTTAAAA
1 TAAATTTAAATTTT-AAA
22439 TAAATT
1 TAAATT
22445 CAATTTCCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
16 5 0.14
17 30 0.86
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAATTTAAATTTTAAA
Found at i:22435 original size:23 final size:22
Alignment explanation
Indices: 22384--22437 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
22374 TTAATTGGAT
*
22384 ATTTTAAATTTAAATTTTAAATA
1 ATTTTAAATTTAAA-TATAAATA
*
22407 AATTTAAATTTAAA-ATAAACTTA
1 ATTTTAAATTTAAATATAAA--TA
22430 ATTTTAAA
1 ATTTTAAA
22438 ATAAATTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 4 0.15
23 22 0.85
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
ATTTTAAATTTAAATATAAATA
Found at i:22449 original size:17 final size:16
Alignment explanation
Indices: 22396--22450 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 16
22386 TTTAAATTTA
22396 AATTTT-AAATAAATTT
1 AATTTTAAAATAAA-TT
*
22412 AAATTTAAAATAAACTT
1 AATTTTAAAATAAA-TT
22429 AATTTTAAAATAAATT
1 AATTTTAAAATAAATT
22445 CAATTT
1 -AATTT
22451 CCAATAAGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
16 7 0.21
17 27 0.79
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (16 bp):
AATTTTAAAATAAATT
Found at i:24079 original size:3 final size:3
Alignment explanation
Indices: 24071--24097 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
24061 AAGTAAAACC
24071 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
24098 AATCTTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:26036 original size:30 final size:30
Alignment explanation
Indices: 26000--26462 Score: 429
Period size: 30 Copynumber: 15.6 Consensus size: 30
25990 GTTCAACATA
*
26000 CCCATTTTTAACCCCGAAACTCCCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
* *
26030 CCCATTTTTACCCCCG-AACTTCTAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
* **
26059 CACATTTTTAACCCAAAAACTTCCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
*
26089 CCCA-TTTTAACCCCGAAACTCCCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
* *
26118 CCCATTTTT-ACCCCCAAACTTCTAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
* *
26147 ACAATTTTTAACCCC-AAACTTCCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
** * *
26176 CCCATTTTTAACCTTGAAGCTTTCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
* **
26206 CCCAATTTTAACCCTAAAACTTCCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
* * * * **
26236 CCTATTTTTAAACTCGAAGCTTTTAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
* *
26266 CCCAATTTTAACCCCGAAACTACCAAAAATT
1 CCCATTTTTAACCCCGAAACTTCCAAAAA-T
* * * *
26297 CCTATTTTT-ACCCCCAAACTACAAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
* * * *
26326 CCCATTTTTAGCCTCGAAGCTTTCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
** * *
26356 TTCATTTTTACCCCCG-AACCTCCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
* * * *
26385 CCCTTTTTTGACCCCAAAACTACCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAAT
* * * *
26415 CCCAATTTTAACCCCAAAACTTTCAACAAGT
1 CCCATTTTTAACCCCGAAACTTCCAA-AAAT
26446 -CCATTTTT-ACCCTCGAA
1 CCCATTTTTAACCC-CGAA
26463 TTTTTCCAAA
Statistics
Matches: 343, Mismatches: 81, Indels: 18
0.78 0.18 0.04
Matches are distributed among these distances:
29 130 0.38
30 202 0.59
31 11 0.03
ACGTcount: A:0.37, C:0.31, G:0.03, T:0.29
Consensus pattern (30 bp):
CCCATTTTTAACCCCGAAACTTCCAAAAAT
Found at i:26079 original size:59 final size:59
Alignment explanation
Indices: 26000--26462 Score: 378
Period size: 59 Copynumber: 7.8 Consensus size: 59
25990 GTTCAACATA
* *
26000 CCCATTTTTAACCCCGAAACTCCCAAAAATCCCATTTTTACCCCCGAACTTCTAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAATCCCATTTTTACCCCCGAACTTCCAAAAAT
* ** * *
26059 CACATTTTTAACCCAAAAACTTCCAAAAATCCCA-TTTTAACCCCGAAACTCCCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAATCCCATTTTTACCCCCG-AACTTCCAAAAAT
* * * * * *
26118 CCCATTTTT-ACCCCCAAACTTCTAAAAATACAATTTTTAACCCCAAACTTCCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAATCCCATTTTTACCCCCGAACTTCCAAAAAT
** * * * ***
26176 CCCATTTTTAACCTTGAAGCTTTCAAAAATCCCAATTTTAACCCTAAAACTTCCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAATCCC-ATTTTTACCCCCGAACTTCCAAAAAT
* * * * ** * * *
26236 CCTATTTTTAAACTCGAAGCTTTTAAAAATCCCAATTTTAACCCCGAAACTACCAAAAATT
1 CCCATTTTTAACCCCGAAACTTCCAAAAATCCCATTTTTACCCCCG-AACTTCCAAAAA-T
* * * * * * *
26297 CCTATTTTT-ACCCCCAAACTACAAAAAATCCCATTTTTAGCCTCGAAGCTTTCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAATCCCATTTTTACCCCCGAA-CTTCCAAAAAT
** * * * ** *
26356 TTCATTTTTACCCCCG-AACCTCCAAAAATCCCTTTTTTGACCCCAAAACTACCAAAAAT
1 CCCATTTTTAACCCCGAAACTTCCAAAAATCCCATTTTT-ACCCCCGAACTTCCAAAAAT
* * * * *
26415 CCCAATTTTAACCCCAAAACTTTCAACAAGT-CCATTTTTACCCTCGAA
1 CCCATTTTTAACCCCGAAACTTCCAA-AAATCCCATTTTTACCCCCGAA
26463 TTTTTCCAAA
Statistics
Matches: 316, Mismatches: 77, Indels: 22
0.76 0.19 0.05
Matches are distributed among these distances:
58 50 0.16
59 134 0.42
60 119 0.38
61 13 0.04
ACGTcount: A:0.37, C:0.31, G:0.03, T:0.29
Consensus pattern (59 bp):
CCCATTTTTAACCCCGAAACTTCCAAAAATCCCATTTTTACCCCCGAACTTCCAAAAAT
Found at i:26490 original size:119 final size:119
Alignment explanation
Indices: 26011--26491 Score: 276
Period size: 119 Copynumber: 4.1 Consensus size: 119
26001 CCATTTTTAA
* * ** * * * * *
26011 CCCCGAAACTCCCAAAAATCCC-ATTTTTACCCCCGAACTTCTAAAAATCACATTTTTAACCCAA
1 CCCCGAACCT-CCAAAAATCCCAATTTTAACCCCAAAACTACCAAAAATCCCAATTTTAACCCCA
* * * * ** ** * *
26075 AAACTTCCAAAAATCCCATTTTAACCC-CGAAACTCCCAAAAATCCCATTTTTAC
65 AAACTACAAAAAATCCCATTTTTACCCTCGAAGCTTTCAAAAATTACAGTTTCAC
* * * * * * ***
26129 CCCCAAACTTCTAAAAAT-ACAATTTTTAACCCC-AAACTTCCAAAAATCCCATTTTTAACCTTG
1 CCCCGAACCTCCAAAAATCCCAA-TTTTAACCCCAAAACTACCAAAAATCCCAATTTTAACCCCA
* * * * * * * * * *
26192 AAGCTTTC-AAAAATCCCAATTTTAACCCT-AAAACTTCCAAAAA-TCCTATTTTTAA
65 AAAC-TACAAAAAATCCC-ATTTTTACCCTCGAAGCTTTCAAAAATTAC-AGTTTCAC
* * * ** * * * * *
26247 ACTCGAAGCTTTTAAAAATCCCAATTTTAACCCCGAAACTACCAAAAATTCCTATTTTTACCCCC
1 CCCCGAA-CCTCCAAAAATCCCAATTTTAACCCCAAAACTACCAAAAATCCCAATTTTAACCCCA
* * * *
26312 AAACTACAAAAAATCCCATTTTTAGCCTCGAAGCTTTCAAAAATTTCATTTTTAC
65 AAACTACAAAAAATCCCATTTTTACCCTCGAAGCTTTCAAAAATTACAGTTTCAC
** *
26367 CCCCGAACCTCCAAAAATCCCTTTTTTGACCCCAAAACTACCAAAAATCCCAATTTTAACCCCAA
1 CCCCGAACCTCCAAAAATCCCAATTTTAACCCCAAAACTACCAAAAATCCCAATTTTAACCCCAA
* * * ** * * *
26432 AACTTTCAACAAGT-CCATTTTTACCCTCGAATTTTTCCAAAATTACCGTTTCAT
66 AAC-TACAAAAAATCCCATTTTTACCCTCGAAGCTTTCAAAAATTACAGTTTCAC
26486 CCCCGA
1 CCCCGA
26492 GAATCCAAAA
Statistics
Matches: 286, Mismatches: 64, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
116 1 0.00
117 46 0.16
118 52 0.18
119 118 0.41
120 67 0.23
121 2 0.01
ACGTcount: A:0.37, C:0.31, G:0.04, T:0.29
Consensus pattern (119 bp):
CCCCGAACCTCCAAAAATCCCAATTTTAACCCCAAAACTACCAAAAATCCCAATTTTAACCCCAA
AACTACAAAAAATCCCATTTTTACCCTCGAAGCTTTCAAAAATTACAGTTTCAC
Done.