genome.fa.s15095.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015095.1 Kokia drynarioides strain JFW-HI SEQ_130139, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  310183

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
704--741	13	2.8	14	84	8	51	57	13	7	21	1.60
692--735	22	2.0	22	81	0	52	54	13	9	22	1.67
1454--1698	136	1.8	136	85	3	350	36	18	16	28	1.92
3930--3972	20	2.0	22	91	8	72	65	0	0	34	0.93
3930--3972	21	2.0	21	86	13	61	65	0	0	34	0.93
6075--6102	14	2.0	14	100	0	56	7	7	0	85	0.73
7800--7837	20	1.9	20	88	0	58	42	2	5	50	1.39
7860--7884	13	1.9	13	100	0	50	32	0	0	68	0.90
9439--9464	9	2.9	9	100	0	52	34	0	34	30	1.58
10847--10923	39	2.0	39	89	5	120	44	0	3	51	1.19
10882--10919	17	2.2	18	90	4	60	39	0	5	55	1.23
28074--28180	53	2.0	53	94	0	187	31	16	15	35	1.91
35344--35381	20	1.9	19	89	5	58	65	0	2	31	1.06
35599--35632	15	2.2	16	89	5	52	26	8	5	58	1.51
35654--35692	20	2.0	20	89	0	60	25	2	5	66	1.25
35664--35715	20	2.7	20	84	3	61	30	5	5	57	1.46
35706--35757	19	2.7	19	74	14	52	25	3	5	65	1.32
36291--36331	16	2.4	18	76	19	52	51	0	0	48	1.00
36358--36389	15	2.1	15	94	0	55	50	0	0	50	1.00
38252--38276	12	2.1	12	100	0	50	76	0	16	8	1.02
40332--40361	13	2.3	13	94	0	51	46	13	6	33	1.69
46604--46688	40	2.1	40	88	0	125	45	16	7	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47865--47905	2	20.5	2	100	0	82	48	0	0	51	1.00
47916--47956	21	2.0	20	85	4	55	34	7	21	36	1.82
55132--55260	67	1.9	67	98	0	249	38	31	13	16	1.88
58360--58666	118	2.6	118	88	2	463	55	22	4	17	1.59
63161--63218	21	2.5	24	83	10	77	41	31	5	22	1.76
63800--64041	52	4.6	52	79	8	224	33	23	14	28	1.95
63800--64041	105	2.3	104	85	2	306	33	23	14	28	1.95
64901--64952	22	2.4	22	81	9	63	36	15	0	48	1.45
79047--79107	26	2.4	24	77	20	61	65	8	11	14	1.46
81842--82047	79	2.6	79	92	0	340	31	27	20	19	1.97
84934--85001	26	2.6	27	79	9	77	45	0	4	50	1.22
84961--84997	19	2.0	19	89	5	58	43	0	2	54	1.14
84966--85017	20	2.7	19	79	11	52	40	3	3	51	1.38
95357--95423	21	3.0	22	80	10	75	43	2	4	49	1.38
120696--120720	6	4.2	6	100	0	50	52	16	0	32	1.44
121690--121723	14	2.5	13	86	9	50	64	0	0	35	0.94
124142--124177	18	2.0	18	100	0	72	33	11	16	38	1.84
125713--125757	25	1.9	22	86	13	63	55	0	8	35	1.31
126162--126202	14	2.9	14	88	3	64	58	2	0	39	1.11
126683--126810	64	2.0	64	98	0	247	22	20	27	29	1.98
132800--132827	9	3.1	9	100	0	56	32	0	35	32	1.58
135778--135833	27	2.0	28	96	3	105	25	5	41	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135776--135843	14	4.9	14	75	12	68	23	4	41	30	1.74
143794--143848	25	2.2	25	96	3	103	0	10	30	58	1.33
149105--149135	15	2.1	15	93	0	53	41	6	29	22	1.78
163810--163848	15	2.4	17	87	8	55	56	0	7	35	1.28
166967--167007	21	2.0	21	85	0	55	41	0	0	58	0.98
167389--167441	26	2.0	26	92	0	88	28	18	11	41	1.85
167602--167653	27	1.9	27	92	0	86	42	19	5	32	1.75
181346--181383	19	2.0	19	100	0	76	42	15	5	36	1.70
181429--181475	19	2.4	19	78	3	58	61	0	2	36	1.08
181797--181876	19	4.3	19	73	12	58	37	2	1	58	1.19
181805--181838	17	2.1	17	88	5	52	38	0	0	61	0.96
181805--181941	9	15.6	9	67	20	58	32	2	2	62	1.22
181805--181843	17	2.3	16	83	12	51	35	0	0	64	0.94
181734--181900	55	3.0	54	81	9	176	31	4	2	62	1.27
182021--182098	31	2.6	30	81	6	77	28	14	11	46	1.79
182398--182491	31	3.1	30	75	20	99	52	8	12	26	1.68
182308--182491	59	3.1	58	74	13	167	49	10	13	26	1.75
182416--182470	28	2.0	28	88	0	83	56	7	10	25	1.59
184687--184734	17	2.6	17	81	15	51	43	2	0	54	1.12
188536--188575	20	2.0	20	100	0	80	15	30	20	35	1.93
194274--194339	19	3.3	20	79	8	64	54	6	3	36	1.41
200738--200789	22	2.4	22	100	0	104	25	13	23	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201992--202034	19	2.3	19	84	4	52	48	0	4	46	1.22
202000--202088	43	2.0	43	80	6	99	42	0	3	53	1.17
203416--203483	32	2.1	32	91	0	109	47	13	5	33	1.67
210127--210171	23	1.9	24	90	4	74	33	2	6	57	1.37
221761--221938	51	3.5	51	86	1	241	35	14	20	29	1.92
236915--236996	37	2.2	38	97	2	157	43	4	31	19	1.72
237408--237463	20	2.9	20	81	7	71	62	0	3	33	1.12
237417--237499	20	4.2	20	73	14	57	62	2	2	32	1.21
237685--237709	7	3.6	7	100	0	50	44	56	0	0	0.99
238602--238637	4	9.0	4	100	0	72	0	25	0	75	0.81
238956--239002	18	2.6	18	76	10	51	63	2	2	31	1.18
240608--240644	19	1.9	19	88	0	56	37	2	13	45	1.58
247371--247395	2	12.5	2	100	0	50	48	0	52	0	1.00
248800--248824	3	8.3	3	100	0	50	32	0	32	36	1.58
250737--250769	2	16.5	2	100	0	66	0	0	48	51	1.00
251938--251977	2	20.0	2	89	0	62	47	2	50	0	1.14
256777--256801	2	12.5	2	100	0	50	48	0	52	0	1.00
257905--257985	23	3.4	25	80	13	100	9	23	24	41	1.84
257955--258951	503	2.0	493	98	1	1904	30	14	19	34	1.91
258992--259024	17	1.9	17	93	0	57	6	24	0	69	1.10
260213--260258	23	2.0	23	82	4	56	30	13	10	45	1.77
260940--260985	16	2.9	16	83	0	56	4	10	2	82	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261447--261502	27	2.1	27	82	0	67	12	37	16	33	1.86
263368--263407	21	1.9	21	89	0	62	60	0	0	40	0.97
267583--267617	2	17.5	2	100	0	70	48	0	0	51	1.00
269064--269113	24	2.1	24	100	0	100	42	28	4	26	1.73
269171--269205	17	1.9	19	88	11	56	0	8	11	80	0.92
275258--275292	17	2.1	17	89	10	54	65	5	0	28	1.15
284180--284220	21	2.0	21	85	0	55	53	17	0	29	1.44
290824--290852	2	14.5	2	100	0	58	48	0	0	51	1.00
306715--306770	22	2.7	20	75	10	58	55	1	0	42	1.10
308684--308810	65	2.0	65	98	0	245	33	11	16	37	1.85

Tables:   1

The End!