Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015096.1 Kokia drynarioides strain JFW-HI SEQ_130140, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8085
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:545 original size:7 final size:7

Alignment explanation


    Indices: 533--579  Score: 94
    Period size: 7  Copynumber: 6.7  Consensus size: 7

        523 TTCATAATAT

                   
        533 TCCCTTC
          1 TCCCTTC

                   
        540 TCCCTTC
          1 TCCCTTC

                   
        547 TCCCTTC
          1 TCCCTTC

                   
        554 TCCCTTC
          1 TCCCTTC

                   
        561 TCCCTTC
          1 TCCCTTC

                   
        568 TCCCTTC
          1 TCCCTTC

                 
        575 TCCCT
          1 TCCCT

        580 CCCTCTGCCG


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   40  1.00

ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43


Consensus pattern (7 bp):   
TCCCTTC

Done.