genome.fa.s15098.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015098.1 Kokia drynarioides strain JFW-HI SEQ_130142, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196537

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11182--11207	2	13.0	2	100	0	52	50	0	0	50	1.00
14210--14235	4	6.5	4	100	0	52	53	0	0	46	1.00
20889--20959	29	2.3	30	81	11	74	35	5	7	52	1.52
21546--21620	29	2.5	29	82	6	78	38	6	12	42	1.68
22954--23042	27	3.4	26	69	17	76	16	2	28	52	1.56
22944--23068	52	2.4	52	85	5	180	18	2	28	50	1.59
25799--25833	2	17.5	2	100	0	70	48	0	0	51	1.00
33769--33866	38	2.6	37	77	6	106	39	27	10	22	1.86
37435--37500	21	3.2	20	67	16	53	30	36	12	21	1.90
46712--46783	36	2.0	36	83	0	90	37	2	34	25	1.70
49671--49746	27	2.8	27	80	4	91	36	15	26	21	1.93
57574--57620	19	2.5	19	78	0	58	55	6	2	36	1.37
58780--58821	22	1.9	22	85	0	57	21	14	11	52	1.73
67113--67165	21	2.6	21	76	8	56	32	0	0	67	0.91
67112--67168	16	3.6	16	74	9	53	29	0	0	70	0.88
67792--67842	24	2.0	24	85	7	66	31	1	5	60	1.31
72147--72204	3	19.3	3	74	0	53	0	32	32	34	1.58
78510--78565	24	2.3	25	75	9	62	30	0	1	67	1.01
80503--80566	19	3.3	18	71	21	58	40	3	3	53	1.33
87599--87668	10	7.6	9	72	16	54	65	1	1	31	1.10
87819--87843	13	1.9	13	100	0	50	80	0	0	20	0.72
88021--88217	95	2.1	96	83	2	245	35	7	13	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98319--98350	7	4.6	7	100	0	64	87	0	12	0	0.54
98595--98639	22	2.0	22	91	0	72	26	6	20	46	1.75
103009--103033	8	3.1	8	100	0	50	24	28	12	36	1.91
111718--111752	6	5.8	6	100	0	70	0	14	0	85	0.59
111920--111954	2	17.5	2	87	0	52	2	0	54	42	1.15
118646--118710	34	1.9	33	90	9	105	7	9	18	64	1.46
118695--118760	31	2.2	29	81	10	80	6	6	15	72	1.24
118930--118988	26	2.2	28	79	14	70	32	0	3	64	1.10
129130--129250	58	2.1	58	84	4	154	46	19	0	33	1.56
129517--129665	72	2.1	72	79	9	164	16	7	14	61	1.54
136710--136805	47	2.0	47	97	0	183	34	12	13	39	1.82
141971--142002	15	2.1	15	100	0	64	28	0	6	65	1.16
142372--142437	31	2.2	30	86	8	89	45	0	0	54	0.99
144368--144433	31	2.2	29	78	19	73	48	0	1	50	1.10
146445--146469	2	12.5	2	100	0	50	48	0	0	52	1.00
147096--147134	17	2.4	17	84	16	55	56	5	0	38	1.22
147561--147613	22	2.5	21	81	3	70	28	3	26	41	1.73
149685--149966	102	2.8	102	80	2	314	30	19	30	19	1.96
151623--151660	17	2.2	18	90	4	60	65	0	0	34	0.93
155754--155840	44	2.0	44	95	0	156	25	17	22	34	1.96
157023--157283	29	8.9	29	72	18	184	33	4	28	33	1.77
157012--157239	60	3.9	58	78	11	173	35	4	27	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157042--157239	87	2.2	89	81	10	237	35	3	27	33	1.74
157140--157287	59	2.5	58	89	3	215	33	4	29	32	1.76
157316--157669	170	2.1	168	85	5	464	18	21	22	37	1.94
157484--158035	206	2.7	206	96	0	1014	18	22	22	36	1.95
169888--170032	58	2.5	58	89	2	229	31	5	30	33	1.80
169920--170275	29	12.4	29	78	11	333	36	3	27	32	1.74
179515--179659	58	2.5	58	89	2	229	31	5	30	33	1.80
179547--179945	29	13.9	29	79	10	371	35	3	28	32	1.75
179652--179934	59	5.0	53	81	14	204	38	3	26	32	1.73
181701--181749	21	2.5	19	83	6	62	34	6	6	53	1.51
181766--181798	17	1.9	17	100	0	66	60	3	0	36	1.12
181848--181942	45	2.1	45	98	0	181	43	14	10	31	1.80
188263--188291	2	14.5	2	100	0	58	48	0	0	51	1.00
191868--191897	4	7.8	4	92	7	53	80	0	20	0	0.72
194923--194979	29	1.9	30	85	3	80	50	7	22	19	1.71

Tables:   1

The End!