genome.fa.s15103.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015103.1 Kokia drynarioides strain JFW-HI SEQ_130147, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  203165

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3237--3364	57	2.2	57	100	0	256	30	14	25	29	1.95
6961--6997	18	2.1	18	89	0	56	67	0	2	29	1.04
15415--15460	24	2.0	23	86	4	65	54	6	8	30	1.56
30893--30936	22	2.2	19	88	12	61	47	4	15	31	1.66
33315--33381	26	2.5	28	90	4	111	43	11	4	40	1.62
40892--40916	6	4.2	6	100	0	50	68	0	0	32	0.90
42138--42180	20	2.2	20	83	8	52	32	23	23	20	1.98
42125--42175	26	2.0	26	92	0	84	37	21	21	19	1.95
42125--42175	13	3.9	13	84	0	66	37	21	21	19	1.95
42282--42341	22	2.7	22	94	2	102	25	3	23	48	1.66
49045--49342	30	10.3	30	76	11	257	33	27	2	36	1.70
49031--49302	58	4.7	57	79	8	268	35	26	2	35	1.69
49325--49394	29	2.4	29	81	6	81	37	25	1	35	1.65
54143--54172	15	2.0	15	100	0	60	33	33	6	26	1.83
54755--54879	9	13.8	9	73	16	107	80	0	17	1	0.79
54755--54882	28	4.6	27	84	12	136	80	0	17	1	0.79
54764--54877	35	3.2	34	85	9	140	80	0	18	0	0.76
56180--56779	39	15.4	39	74	8	375	24	28	21	25	1.99
56129--56801	78	8.6	78	76	4	482	24	28	20	26	1.99
56129--56705	117	4.9	116	78	4	554	24	28	20	26	1.99
57598--57643	24	1.9	24	86	8	67	32	10	4	52	1.56
58860--59250	29	13.3	30	76	9	326	33	27	3	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58841--59251	90	4.7	87	78	6	364	34	27	3	35	1.73
58842--59188	59	5.9	58	76	8	265	34	26	3	35	1.73
63340--63369	15	2.1	15	93	6	53	20	0	3	76	0.92
63374--63422	21	2.3	21	85	3	62	30	0	6	63	1.19
65758--65811	20	2.7	20	85	0	72	29	33	9	27	1.88
65997--66075	20	4.0	20	76	3	70	32	29	10	27	1.89
68908--68957	20	2.5	20	90	0	73	24	36	14	26	1.93
73780--73823	22	2.1	21	88	12	65	36	2	0	61	1.09
74416--74493	33	2.4	33	86	4	104	29	23	17	29	1.97
74416--74505	33	2.7	33	82	3	92	31	23	17	27	1.97
75315--75339	12	2.1	12	100	0	50	24	24	24	28	2.00
76061--76094	17	2.0	17	88	0	50	41	8	5	44	1.60
78571--78621	21	2.4	21	81	15	61	33	3	0	62	1.13
78574--78631	20	2.7	21	74	12	55	32	3	0	63	1.11
84468--84521	17	3.3	17	70	19	60	12	20	7	59	1.58
84458--84522	32	2.0	32	100	0	130	12	26	6	55	1.60
92224--92317	48	2.0	48	87	4	136	38	13	5	42	1.67
93432--93470	18	2.1	19	90	4	62	30	15	5	48	1.66
96854--96889	14	2.6	14	86	0	54	55	2	0	41	1.14
103887--103939	24	2.3	22	80	6	61	41	3	5	49	1.44
104619--104686	35	2.0	33	85	5	91	42	2	5	48	1.42
106028--106110	31	2.7	31	82	0	103	24	13	18	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115036--115115	17	4.7	17	87	0	115	53	3	0	42	1.18
115023--115070	23	2.1	23	92	7	80	52	2	0	45	1.12
115023--115080	10	5.8	10	74	22	59	53	1	0	44	1.10
115028--115085	23	2.5	23	86	5	73	55	1	0	43	1.10
115030--115115	6	15.0	6	72	18	67	53	3	0	43	1.18
115733--116064	116	2.9	114	77	5	380	21	23	19	34	1.96
115963--116649	205	3.3	205	90	0	1059	22	22	18	36	1.95
128129--128154	13	2.0	13	100	0	52	23	7	23	46	1.78
128165--128218	6	9.3	6	80	15	69	53	0	0	46	1.00
128171--128250	17	4.7	17	87	0	115	53	2	0	43	1.14
128171--128250	34	2.4	34	93	0	133	53	2	0	43	1.14
128158--128203	23	2.0	22	95	4	83	54	0	0	45	0.99
130753--130787	18	1.9	18	88	0	52	60	0	11	28	1.32
132196--132221	13	2.0	13	100	0	52	23	7	38	30	1.83
136237--136484	133	1.9	133	97	0	469	33	19	18	28	1.95
137129--137171	17	2.3	18	76	15	52	30	2	0	67	1.03
137631--137670	19	2.0	20	90	4	64	50	0	7	42	1.30
137633--137670	11	3.8	10	86	10	51	47	0	7	44	1.32
138756--138931	30	5.9	30	82	1	192	31	11	17	39	1.85
138755--138921	60	2.8	60	85	1	219	30	11	17	40	1.85
139266--139339	36	2.1	34	83	14	89	44	4	1	50	1.29
139550--139639	6	15.7	6	72	13	73	44	1	2	52	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139550--139639	17	5.2	17	82	1	108	44	1	2	52	1.20
140314--140398	3	28.0	3	75	7	73	57	1	3	37	1.23
141454--141615	29	5.5	29	74	4	137	38	23	3	34	1.71
141608--141703	29	3.3	29	72	13	97	35	25	7	32	1.83
141463--141691	30	7.8	29	69	16	118	36	24	4	34	1.77
141463--141702	59	4.1	59	78	6	197	36	24	5	34	1.77
143864--144154	30	9.9	29	73	11	184	34	26	4	34	1.78
143899--144155	29	8.9	28	73	10	151	34	26	4	34	1.77
143899--144156	58	4.5	57	74	9	184	34	26	4	34	1.77
154957--155508	209	2.6	209	90	0	863	36	19	21	22	1.95
155401--155586	85	2.2	85	87	0	264	34	18	23	23	1.96
156074--156154	30	2.8	29	81	3	90	38	23	3	34	1.73
156074--156137	29	2.2	30	85	2	85	39	23	3	34	1.71
157804--157842	21	1.9	20	85	15	53	25	20	15	38	1.92
161499--161589	31	3.1	30	81	10	107	54	8	1	35	1.38
162308--162352	22	2.0	23	82	4	56	48	4	0	46	1.22
163144--163207	25	2.6	24	77	20	69	57	1	0	40	1.08
164049--164093	24	2.0	23	83	12	58	35	6	11	46	1.66
164157--164244	41	2.1	43	89	4	135	20	2	12	64	1.37
164164--164237	18	3.8	18	70	18	58	17	2	13	66	1.37
164220--164245	12	2.2	12	100	0	52	23	0	7	69	1.14
192864--193050	86	2.2	87	86	3	254	50	17	10	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201248--201308	29	2.1	28	84	3	77	26	13	29	31	1.93
201333--201427	29	3.2	28	73	14	84	34	2	23	40	1.66
201295--201435	59	2.4	59	87	2	212	36	2	24	36	1.68
201295--201456	59	2.7	58	83	5	209	37	1	24	36	1.67
201442--201605	90	1.8	89	80	6	197	37	4	22	35	1.74
201379--201648	149	1.8	147	83	6	357	36	4	24	34	1.75
201295--201635	30	11.5	29	70	14	171	36	3	24	36	1.72

Tables:   1

The End!