genome.fa.s15106.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015106.1 Kokia drynarioides strain JFW-HI SEQ_130150, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116210

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4980--5011	15	2.1	16	94	5	57	31	0	6	62	1.20
4961--5029	25	2.6	26	82	8	86	34	1	8	55	1.40
13009--13047	20	2.0	20	94	0	69	33	10	5	51	1.58
13433--13487	28	1.9	29	85	10	78	32	7	7	52	1.56
20518--20585	28	2.4	29	76	14	70	63	1	1	33	1.13
27009--27106	17	5.7	17	68	20	60	42	1	3	53	1.23
27007--27105	34	2.9	34	82	7	119	42	1	3	53	1.23
27039--27102	6	11.2	6	76	15	64	43	1	3	51	1.26
27865--27921	18	3.1	18	75	12	62	49	1	0	49	1.11
29045--29335	30	9.9	29	78	11	290	34	28	4	33	1.76
29049--29371	59	5.5	57	81	10	307	34	28	4	32	1.77
29294--29429	58	2.3	59	82	1	157	31	27	5	36	1.79
44682--44728	8	5.8	8	80	14	51	31	0	0	68	0.90
45127--45160	18	1.9	18	88	5	52	29	0	5	64	1.17
51197--51275	28	2.8	28	86	0	104	31	15	27	25	1.95
59484--59523	12	3.3	12	78	0	53	20	2	0	77	0.88
60252--60310	24	2.5	24	76	13	68	62	5	0	32	1.17
61140--61251	51	2.2	51	81	0	125	38	14	7	40	1.73
63875--63900	8	3.2	8	100	0	52	76	11	0	11	1.01
64212--64243	14	2.3	14	94	0	55	50	6	6	37	1.53
65241--65271	13	2.4	13	94	0	53	41	0	0	58	0.98
78689--78718	15	2.0	15	93	0	51	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86700--86732	17	1.9	17	93	0	57	51	3	6	39	1.42
88497--88658	80	2.0	80	100	0	324	20	27	19	32	1.97
90038--90245	101	2.1	101	88	1	310	43	22	11	23	1.85
93322--93355	12	2.7	12	90	9	50	17	0	0	82	0.67
95477--95604	42	3.1	41	85	6	170	21	7	6	64	1.43
96030--96068	19	2.0	20	85	5	53	53	10	2	33	1.48
101009--101094	17	4.8	17	72	14	57	38	2	8	51	1.45
101049--101089	6	7.2	6	78	10	50	46	0	4	48	1.23
101069--101094	11	2.4	11	100	0	52	46	0	7	46	1.31
102972--103134	29	5.5	29	72	10	116	35	26	3	34	1.72
102968--103164	59	3.4	58	81	9	204	34	26	5	34	1.78
102968--103277	58	5.3	58	76	8	220	32	26	6	34	1.82
103002--103164	29	5.6	28	74	9	123	34	28	4	32	1.79
112340--113362	206	5.0	206	90	0	1537	36	19	21	22	1.95
112340--113305	411	2.3	411	90	0	1509	35	19	22	23	1.96
113680--113761	17	4.6	17	71	15	58	37	2	7	52	1.43
114398--114450	3	17.7	3	78	0	52	60	5	0	33	1.20
114396--114435	21	1.9	21	89	0	62	57	10	0	32	1.32
114398--114472	33	2.3	33	83	4	89	58	6	1	33	1.32
115596--115853	29	8.8	29	72	12	168	36	24	4	34	1.76
115601--115853	59	4.3	59	78	4	235	35	24	4	35	1.77

Tables:   1

The End!