Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001511.1 Kokia drynarioides strain JFW-HI SEQ_113059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 837

Length: 1395
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35


Found at i:390 original size:221 final size:221

Alignment explanation


    Indices: 1--1395  Score: 2200
    Period size: 221  Copynumber: 6.3  Consensus size: 221

                                *                             *              
          1 GGATATTATCCCTTTCCAATGGTTTTATGCCACACCAACAATTTCATCCTAAATTTCAGGATTTT
          1 GGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTT

                                *                *                           
         66 AATTTTAATTTG-TTTTTCTGAGGATGAAAATGTTGACATTAAGAATGAAAATACTGATGTGGCG
         66 AATTTTAATTTGATTTTT-TCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCG

             *    * *                                     *       *          
        130 TCAAACCAATAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCGTTCAATCATTTTCCATTG
        130 TAAAACTATTAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATTG

                                        
        195 AAGAAGAGAAAGGATTGTA-AGAAACAG
        195 AAGAAGAGAAAGGATTGTATA-AAACAG

                                              *                              
        222 GGATATTATCCCTTTCCAATAGTTTTATGCCACATCAACAATTTCATCCTGAATTTCAGGATTTT
          1 GGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTT

                                            *     *                       *  
        287 AATTTTAATTTGATTTTTTCAGGATGAAAATGATGAAAATAAGAATGAAAATACTGATGTGGTGT
         66 AATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGT

                                   *       *                                 
        352 AAAACTATTAGAAAAGGGACACAGATGACGTCGTGTCACTGTTTCATTCAATCCTTTTCCATTGA
        131 AAAACTATTAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATTGA

                         *            
        417 AGAAGAGAAAGGAATGTATAAAACAG
        196 AGAAGAGAAAGGATTGTATAAAACAG

                    *                                          *             
        443 GGATATTACCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGTATTTCAGGATTTT
          1 GGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTT

            *                *                            *                  
        508 GATTTTAATTTGATTTTCTCAGGATGAAAATGTTGAAATTAAGAATAAAAATACTGATGTGGCGT
         66 AATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGT

                     *    *                *                     *           
        573 AAAACTATTGGAAATGGGACACAAATGACGTTGTGTCACTGTTTCATTCAATCATTTTCCATTGA
        131 AAAACTATTAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATTGA

                      *        *      
        638 AGAAGAGAAAAGATTGTATGAAACAG
        196 AGAAGAGAAAGGATTGTATAAAACAG

                                *             *            **                
        664 GGATATTATCCCTTTCCAATTGTTTTATGCCACATCAACAATTTCATTTTGAATTTCAGGATTTT
          1 GGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTT

                   *   *                  *                                * 
        729 AATTTTATTTTTATTTTTTCAGGATGAAAAAGTTGAAATTAAGAATGAAAATACTGATGTGGCAT
         66 AATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGT

                   * *                             *            *            
        794 AAAACTAATGGAAAAGGGACACAAATGACGTGGTGTCACGGTTTCATTCAATTCTTTTCCATTGA
        131 AAAACTATTAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATTGA

               *                     *
        859 AGAGGAGAAAGGATTGTATAAAACAA
        196 AGAAGAGAAAGGATTGTATAAAACAG

            *                                                  *             
        885 CGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGTATTTCAGGATTTT
          1 GGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTT

            *           *                                             *   *  
        950 GATTTTAATTTGTTTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATATGGTGT
         66 AATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGT

                              *                                              
       1015 AAAACTATTAGAAAAGGGTCACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATTGA
        131 AAAACTATTAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATTGA

            *              *   *    * 
       1080 TGAAGAGAAAGGATTCTATGAAACTG
        196 AGAAGAGAAAGGATTGTATAAAACAG

                              *               *                         *    
       1106 GGATATTATCCCTTTCCATTAGTTTTATGCCACATCAACAATTTCATCCTGAATTTCAGGCTTTT
          1 GGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTT

                                 *            *                              
       1171 AATTTTAATTTGATTTTTTCAAGATGAAAATGTTAAAATTAAGAATGAAAATACTGATGTGGCGT
         66 AATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGT

                                   *       *                                 
       1236 AAAACTATTAGAAAAGGGACACAGATGACGTCGTGTCACTGTTTCATTCAATCCTTTTCCATTGA
        131 AAAACTATTAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATTGA

                                    * 
       1301 AGAAGAGAAAGGATTGTATAAAACTG
        196 AGAAGAGAAAGGATTGTATAAAACAG

                              *                                *             
       1327 GGATATTATCCCTTTCCAGTAGTTTTATGCCACACCAACAATTTCATCCTGTATTTCAGGATTTT
          1 GGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTT

                
       1392 AATT
         66 AATT


Statistics
Matches: 1070,  Mismatches: 102, Indels: 4
        0.91            0.09        0.00

Matches are distributed among these distances:
 221  1064  0.99
 222    6  0.01

ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35


Consensus pattern (221 bp):   
GGATATTATCCCTTTCCAATAGTTTTATGCCACACCAACAATTTCATCCTGAATTTCAGGATTTT
AATTTTAATTTGATTTTTTCAGGATGAAAATGTTGAAATTAAGAATGAAAATACTGATGTGGCGT
AAAACTATTAGAAAAGGGACACAAATGACGTGGTGTCACTGTTTCATTCAATCCTTTTCCATTGA
AGAAGAGAAAGGATTGTATAAAACAG

Done.