Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015111.1 Kokia drynarioides strain JFW-HI SEQ_130155, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24276
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32

Warning! 200 characters in sequence are not A, C, G, or T


Found at i:8702 original size:48 final size:48

Alignment explanation


    Indices: 8646--8741  Score: 192
    Period size: 48  Copynumber: 2.0  Consensus size: 48

       8636 CAGTTTCTTG

                                                            
       8646 CCTGTCAACTCGCTGTCTGACCTTTAACAAGAAACTTTCATTGTCCTT
          1 CCTGTCAACTCGCTGTCTGACCTTTAACAAGAAACTTTCATTGTCCTT

                                                            
       8694 CCTGTCAACTCGCTGTCTGACCTTTAACAAGAAACTTTCATTGTCCTT
          1 CCTGTCAACTCGCTGTCTGACCTTTAACAAGAAACTTTCATTGTCCTT

       8742 TTCAGTATGT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   48  1.00

ACGTcount: A:0.23, C:0.29, G:0.12, T:0.35


Consensus pattern (48 bp):   
CCTGTCAACTCGCTGTCTGACCTTTAACAAGAAACTTTCATTGTCCTT
Done.