Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015115.1 Kokia drynarioides strain JFW-HI SEQ_130159, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 273921
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Warning! 566 characters in sequence are not A, C, G, or T
Found at i:921 original size:19 final size:19
Alignment explanation
Indices: 888--928 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
878 GAATTTTAGG
*
888 TTTTAG-AAAATTTTAGAA
1 TTTTAGAAAAATTTAAGAA
906 TTTTATGAAAAATTTAAGAA
1 TTTTA-GAAAAATTTAAGAA
926 TTT
1 TTT
929 ATGGTTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 1 0.05
20 14 0.70
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (19 bp):
TTTTAGAAAAATTTAAGAA
Found at i:4723 original size:13 final size:13
Alignment explanation
Indices: 4687--4730 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
4677 AAACATCAAC
*
4687 TAATTTTTTTATA
1 TAATTTTTATATA
*
4700 TATTTACTTTATATA
1 TAATT--TTTATATA
4715 TAATTTTTATATA
1 TAATTTTTATATA
4728 TAA
1 TAA
4731 AATATTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 15 0.58
15 11 0.42
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (13 bp):
TAATTTTTATATA
Found at i:6986 original size:3 final size:3
Alignment explanation
Indices: 6978--7015 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
6968 GCTTCGCATT
6978 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
7016 CATAAGCTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:7844 original size:3 final size:3
Alignment explanation
Indices: 7830--7859 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
7820 GCTGCCAAAG
*
7830 CTT CTC CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
7860 ATTAAACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
CTT
Found at i:17959 original size:26 final size:27
Alignment explanation
Indices: 17930--17980 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
17920 AAACACATTC
*
17930 ATAATAATATTTATTAATTT-TTAAAT
1 ATAATAATATTTAATAATTTCTTAAAT
* *
17956 ATAATATTTTTTAATAATTTCTTAA
1 ATAATAATATTTAATAATTTCTTAA
17981 CTGGGTTGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (27 bp):
ATAATAATATTTAATAATTTCTTAAAT
Found at i:25954 original size:12 final size:13
Alignment explanation
Indices: 25937--25969 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
25927 TCGAATGAAT
25937 TTTAAATG-CTAA
1 TTTAAATGTCTAA
25949 TTTAAATGTCTAA
1 TTTAAATGTCTAA
*
25962 TTTGAATG
1 TTTAAATG
25970 AAAATAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (13 bp):
TTTAAATGTCTAA
Found at i:32562 original size:146 final size:148
Alignment explanation
Indices: 32385--32668 Score: 509
Period size: 146 Copynumber: 1.9 Consensus size: 148
32375 AAATGTTGAA
*
32385 TTTGTGTTAAAAAAAAAAAATGGAAAATTATTAATAAAGTAAAATAGAAAAAAAGTTTCCTTTTA
1 TTTGTGTTAAAAAAAAAAAATGGAAAATTATTAATAAAGTAAAATAGAAAAAAAGATTCCTTTTA
*
32450 AGGGGGACGAAAAAGAAAGGAAATGACAGAGGGTAGGAAAGTGAGTCCAACAAACAGTAGAAGAG
66 AGGGGGACGAAAAAGAAAGGAAATGACAGAGGGTAGGAAAGTGAGTCCAACAAACAGTAAAAGAG
32515 CACGTTTGGAAATCTTTT
131 CACGTTTGGAAATCTTTT
*
32533 TTTGTG-TAAAAAAAAAAAA-GGAAAATTATTAATAAAGTAAAATAGAAAAAGAGATTCCTTTTA
1 TTTGTGTTAAAAAAAAAAAATGGAAAATTATTAATAAAGTAAAATAGAAAAAAAGATTCCTTTTA
* *
32596 TGGGGGACGAAAGAGAAAGGAAATGACAGAGGGTAGGAAAGTGAGTCCAACAAACAGTAAAAGAG
66 AGGGGGACGAAAAAGAAAGGAAATGACAGAGGGTAGGAAAGTGAGTCCAACAAACAGTAAAAGAG
32661 CACGTTTG
131 CACGTTTG
32669 AAAAAATATA
Statistics
Matches: 131, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
146 112 0.85
147 13 0.10
148 6 0.05
ACGTcount: A:0.48, C:0.07, G:0.23, T:0.21
Consensus pattern (148 bp):
TTTGTGTTAAAAAAAAAAAATGGAAAATTATTAATAAAGTAAAATAGAAAAAAAGATTCCTTTTA
AGGGGGACGAAAAAGAAAGGAAATGACAGAGGGTAGGAAAGTGAGTCCAACAAACAGTAAAAGAG
CACGTTTGGAAATCTTTT
Found at i:34111 original size:27 final size:26
Alignment explanation
Indices: 34081--34158 Score: 70
Period size: 26 Copynumber: 3.0 Consensus size: 26
34071 AAAATACGTT
34081 ATAAAATTTTAAAAATAGTAAAAAACA
1 ATAAAATTTTAAAAATAGTAAAAAA-A
* *
34108 ATAAAATTATTAGAATTA-TAAAAAAA
1 ATAAAATT-TTAAAAATAGTAAAAAAA
* * *
34134 TTAAAATGATTAAAAATTG-AAAAAA
1 ATAAAAT-TTTAAAAATAGTAAAAAA
34159 TATTGTGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
26 19 0.46
27 15 0.37
28 7 0.17
ACGTcount: A:0.65, C:0.01, G:0.05, T:0.28
Consensus pattern (26 bp):
ATAAAATTTTAAAAATAGTAAAAAAA
Found at i:35519 original size:26 final size:25
Alignment explanation
Indices: 35483--35533 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
35473 ATTTTTCAAC
*
35483 AAAAATACATA-AGATTTTATAAAAA
1 AAAAATACATACAAATTTTA-AAAAA
35508 AAAAATTACATACAAATTTTAAAAAA
1 AAAAA-TACATACAAATTTTAAAAAA
35534 TATTTATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 5 0.22
26 11 0.48
27 7 0.30
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (25 bp):
AAAAATACATACAAATTTTAAAAAA
Found at i:57528 original size:15 final size:14
Alignment explanation
Indices: 57483--57528 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
57473 AGAAAATATG
*
57483 AAAA-ATTATGTAA
1 AAAATATTATTTAA
*
57496 AAAATATTATTTAT
1 AAAATATTATTTAA
57510 AAAATATTTATTTAA
1 AAAATA-TTATTTAA
57525 AAAA
1 AAAA
57529 ATAGATGAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 4 0.14
14 13 0.46
15 11 0.39
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (14 bp):
AAAATATTATTTAA
Found at i:70018 original size:2 final size:2
Alignment explanation
Indices: 70013--70038 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
70003 AAAAACTCTT
70013 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
70039 ATTGTAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:85412 original size:29 final size:30
Alignment explanation
Indices: 85370--85437 Score: 93
Period size: 31 Copynumber: 2.3 Consensus size: 30
85360 TAAAAATTTT
85370 ATATATAAAATTACACA-AAATCAAAGTTC
1 ATATATAAAATTACACATAAATCAAAGTTC
* *
85399 ATATATACAATTACACATTAAATCATAGTTC
1 ATATATAAAATTACACA-TAAATCAAAGTTC
*
85430 ATGTATAA
1 ATATATAA
85438 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
31 17 0.52
ACGTcount: A:0.50, C:0.13, G:0.04, T:0.32
Consensus pattern (30 bp):
ATATATAAAATTACACATAAATCAAAGTTC
Found at i:91608 original size:31 final size:29
Alignment explanation
Indices: 91572--91638 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 29
91562 AATATCAAAC
91572 TATACATGAACTCTAG-TTTAATGTGTAATTA
1 TATACATGAACT-TAGATTT--TGTGTAATTA
* *
91603 TATACATGAACTTTGATTTTGTGTAATTT
1 TATACATGAACTTAGATTTTGTGTAATTA
91632 TATACAT
1 TATACAT
91639 AAAATTTTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 16 0.48
30 2 0.06
31 15 0.45
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (29 bp):
TATACATGAACTTAGATTTTGTGTAATTA
Found at i:91652 original size:29 final size:29
Alignment explanation
Indices: 91593--91651 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
91583 TCTAGTTTAA
*
91593 TGTGTAATTATATACATGAACTTTGATTT
1 TGTGTAATTATATACATAAACTTTGATTT
* *
91622 TGTGTAATTTTATACATAAAATTTTGATTT
1 TGTGTAATTATATACAT-AAACTTTGATTT
91652 GATTCAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.51
Consensus pattern (29 bp):
TGTGTAATTATATACATAAACTTTGATTT
Found at i:92252 original size:6 final size:6
Alignment explanation
Indices: 92243--92283 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
92233 CTTTCTCTGT
92243 ACTCCA ACTCCA ACTCCA ACTCCA ACTCCA ACTCCA ACTCC
1 ACTCCA ACTCCA ACTCCA ACTCCA ACTCCA ACTCCA ACTCC
92284 TCCCTCTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.32, C:0.51, G:0.00, T:0.17
Consensus pattern (6 bp):
ACTCCA
Found at i:96801 original size:2 final size:2
Alignment explanation
Indices: 96794--96818 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
96784 TGCAAATCTT
96794 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
96819 TGCACACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:116642 original size:27 final size:26
Alignment explanation
Indices: 116612--116663 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
116602 GAGAAACACG
116612 AAGTGGCGGCACCAATGGAGGGTTTTC
1 AAGTGGCGGCACCAA-GGAGGGTTTTC
* * *
116639 AAGTGGTGGCACTAAGGAGTGTTTT
1 AAGTGGCGGCACCAAGGAGGGTTTT
116664 GCCACTTGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.23, C:0.13, G:0.37, T:0.27
Consensus pattern (26 bp):
AAGTGGCGGCACCAAGGAGGGTTTTC
Found at i:116841 original size:11 final size:11
Alignment explanation
Indices: 116827--116862 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
116817 ACGAAAATTA
116827 AAAGAAAAAAG
1 AAAGAAAAAAG
116838 AAAGAAAAAAG
1 AAAGAAAAAAG
*
116849 AGAGAAAGAAAG
1 AAAGAAA-AAAG
116861 AA
1 AA
116863 GAAGGAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 17 0.77
12 5 0.23
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (11 bp):
AAAGAAAAAAG
Found at i:116881 original size:16 final size:15
Alignment explanation
Indices: 116860--116889 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
116850 GAGAAAGAAA
116860 GAAGAAGGAAGAAGGG
1 GAAGAAGG-AGAAGGG
116876 GAAGAAGGAGAAGG
1 GAAGAAGGAGAAGG
116890 AAAAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (15 bp):
GAAGAAGGAGAAGGG
Found at i:121598 original size:13 final size:14
Alignment explanation
Indices: 121580--121612 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
121570 GTCAGTATTT
*
121580 TATAATTAGTT-AA
1 TATAATTACTTAAA
121593 TATAATTACTTAAA
1 TATAATTACTTAAA
121607 TATAAT
1 TATAAT
121613 AACATTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (14 bp):
TATAATTACTTAAA
Found at i:122426 original size:13 final size:13
Alignment explanation
Indices: 122394--122431 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
122384 TAGTTAATTA
122394 AATTAT-TTAATTT
1 AATTATATT-ATTT
122407 AATTTATATTATTT
1 AA-TTATATTATTT
122421 AATTATATTAT
1 AATTATATTAT
122432 ACATTTTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 11 0.48
14 10 0.43
15 2 0.09
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
AATTATATTATTT
Found at i:141592 original size:3 final size:3
Alignment explanation
Indices: 141584--141628 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
141574 GACTAATTCT
141584 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
141629 ATTAGATATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:146348 original size:21 final size:21
Alignment explanation
Indices: 146323--146375 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
146313 AGCCACTCCC
*
146323 ATCGCCTCCCTCACTCTACAG
1 ATCGCCACCCTCACTCTACAG
146344 ATCGCCACCCTCACTCTACAG
1 ATCGCCACCCTCACTCTACAG
146365 ATCGCCACCCT
1 ATCGCCACCCT
146376 TCAATCTCTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.21, C:0.49, G:0.09, T:0.21
Consensus pattern (21 bp):
ATCGCCACCCTCACTCTACAG
Found at i:150682 original size:3 final size:3
Alignment explanation
Indices: 150674--150703 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
150664 TAATTGAAAA
150674 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
150704 GTGCTTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:155029 original size:58 final size:58
Alignment explanation
Indices: 154958--155073 Score: 187
Period size: 58 Copynumber: 2.0 Consensus size: 58
154948 ATCAACAAAT
* *
154958 TAAACCCAAATATTTTTAAACTCAAATATAATTTAATTCTTCAAGAACACTCATAAAC
1 TAAACCCAAATATTTTTAAACTCAAATATAATTTAATTCCTAAAGAACACTCATAAAC
* * *
155016 TAAACCTAAATATTTTTAAACTCAAATATAATTTTATTCCTAAATAACACTCATAAAC
1 TAAACCCAAATATTTTTAAACTCAAATATAATTTAATTCCTAAAGAACACTCATAAAC
155074 AATTCTTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.34
Consensus pattern (58 bp):
TAAACCCAAATATTTTTAAACTCAAATATAATTTAATTCCTAAAGAACACTCATAAAC
Found at i:159348 original size:20 final size:21
Alignment explanation
Indices: 159325--159363 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
159315 GGTTAAGATT
*
159325 AAAATTTC-AAAATTAAAAAA
1 AAAAATTCAAAAATTAAAAAA
159345 AAAAATTCAAAAATTAAAA
1 AAAAATTCAAAAATTAAAA
159364 GCGACGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAAATTCAAAAATTAAAAAA
Found at i:165413 original size:24 final size:23
Alignment explanation
Indices: 165386--165458 Score: 56
Period size: 24 Copynumber: 3.0 Consensus size: 23
165376 TCATATATTA
*
165386 ATTTTGATATAAATATATTAAATT
1 ATTTTAATATAAATA-ATTAAATT
* * * *
165410 ATTTTTATTTTAAATAAATAAATA
1 A-TTTTAATATAAATAATTAAATT
* *
165434 ATATTAAAATAAATAGATTAAATT
1 ATTTTAATATAAATA-ATTAAATT
165458 A
1 A
165459 CCGATTTATT
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
23 10 0.28
24 15 0.42
25 11 0.31
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (23 bp):
ATTTTAATATAAATAATTAAATT
Found at i:166486 original size:2 final size:2
Alignment explanation
Indices: 166479--166506 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
166469 TTTCAACTTT
166479 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
166507 ATTCCCACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:172664 original size:3 final size:3
Alignment explanation
Indices: 172656--172687 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
172646 AACATCAAAA
172656 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
172688 AACTCTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:173234 original size:28 final size:27
Alignment explanation
Indices: 173203--173295 Score: 87
Period size: 28 Copynumber: 3.3 Consensus size: 27
173193 TCAAAGAAAT
173203 ATTTTTTATCAATTTTTAAAGGTTTCAA
1 ATTTTTTATCAATTTTTAAAGGTTT-AA
* * *
173231 ATTTTTGTTTTTAATTTTTAAGGGTCTTAA
1 A-TTTT-TTATCAATTTTTAAAGGT-TTAA
* * *
173261 TTTTTTTATCAACTTTTAAGAGATTTAA
1 ATTTTTTATCAATTTTTAA-AGGTTTAA
173289 ATTTTTT
1 ATTTTTT
173296 TTAACTTTAA
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
28 22 0.43
29 10 0.20
30 17 0.33
31 2 0.04
ACGTcount: A:0.28, C:0.05, G:0.09, T:0.58
Consensus pattern (27 bp):
ATTTTTTATCAATTTTTAAAGGTTTAA
Found at i:173295 original size:30 final size:30
Alignment explanation
Indices: 173199--173298 Score: 102
Period size: 30 Copynumber: 3.4 Consensus size: 30
173189 CAAGTCAAAG
*
173199 AAATATTTTTTATCAATTTTTAA-AGGTTT
1 AAATTTTTTTTATCAATTTTTAAGAGGTTT
*
173228 CAAATTTTTGTTT-TTAATTTTTAAG-GGTCTT
1 -AAATTTTT-TTTATCAATTTTTAAGAGGT-TT
* *
173259 -AA-TTTTTTTATCAACTTTTAAGAGATTT
1 AAATTTTTTTTATCAATTTTTAAGAGGTTT
173287 AAATTTTTTTTA
1 AAATTTTTTTTA
173299 ACTTTAATTG
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
27 3 0.05
28 16 0.28
29 6 0.10
30 28 0.48
31 5 0.09
ACGTcount: A:0.30, C:0.05, G:0.08, T:0.57
Consensus pattern (30 bp):
AAATTTTTTTTATCAATTTTTAAGAGGTTT
Found at i:173301 original size:27 final size:26
Alignment explanation
Indices: 173238--173303 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 26
173228 CAAATTTTTG
* *
173238 TTTTTAATTTTTAAGGGTCTTAATTT
1 TTTTTAACTTTTAAGGATCTTAATTT
173264 TTTTATCAACTTTTAAGAGAT-TTAAATTT
1 TTTT-T-AACTTTTAAG-GATCTT-AATTT
173293 TTTTTAACTTT
1 TTTTTAACTTT
173304 AATTGTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
26 4 0.12
27 7 0.21
28 12 0.35
29 11 0.32
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (26 bp):
TTTTTAACTTTTAAGGATCTTAATTT
Found at i:187174 original size:22 final size:22
Alignment explanation
Indices: 187133--187175 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
187123 TATCCAAACA
*
187133 ATAACAATGAAATAATAGCAAC
1 ATAACAATGAAATAACAGCAAC
* *
187155 ATAATAATGAAATGACAGCAA
1 ATAACAATGAAATAACAGCAA
187176 AACAAAAANN
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAATGAAATAACAGCAAC
Found at i:189226 original size:11 final size:11
Alignment explanation
Indices: 189188--189258 Score: 65
Period size: 12 Copynumber: 6.4 Consensus size: 11
189178 AAAAGGCATA
189188 AAAATAACAACC
1 AAAATAACAA-C
*
189200 AAAATAGCAAC
1 AAAATAACAAC
*
189211 AAAAATAACAGC
1 -AAAATAACAAC
*
189223 AAAACAACAAC
1 AAAATAACAAC
*
189234 -AAA-AACAAT
1 AAAATAACAAC
189243 ACAAATAACAAC
1 A-AAATAACAAC
189255 AAAA
1 AAAA
189259 AAAAGCACTA
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
9 5 0.10
10 3 0.06
11 16 0.33
12 24 0.50
ACGTcount: A:0.70, C:0.20, G:0.03, T:0.07
Consensus pattern (11 bp):
AAAATAACAAC
Found at i:189319 original size:23 final size:22
Alignment explanation
Indices: 189276--189328 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
189266 CTAAAATAGC
*
189276 ATCAAAACAGTAAAAAGCAACA
1 ATCAAAACAGTAAAAAACAACA
*
189298 ATCAAAATAGTAAAAAAACAAC-
1 ATCAAAACAGT-AAAAAACAACA
*
189320 ACCAAAACA
1 ATCAAAACA
189329 ACAATATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 17 0.65
23 9 0.35
ACGTcount: A:0.66, C:0.19, G:0.06, T:0.09
Consensus pattern (22 bp):
ATCAAAACAGTAAAAAACAACA
Found at i:194028 original size:6 final size:6
Alignment explanation
Indices: 194012--194048 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
194002 ATGGTGTTGC
* *
194012 AGGTGA TGGTGA AGGTGA AGGAGA AGGTGA AGGTGA A
1 AGGTGA AGGTGA AGGTGA AGGTGA AGGTGA AGGTGA A
194049 TCTATGCTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.35, C:0.00, G:0.49, T:0.16
Consensus pattern (6 bp):
AGGTGA
Found at i:196928 original size:6 final size:6
Alignment explanation
Indices: 196917--196942 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
196907 ATTCAAGTAC
196917 GTGGTT GTGGTT GTGGTT GTGGTT GT
1 GTGGTT GTGGTT GTGGTT GTGGTT GT
196943 ATTCCATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (6 bp):
GTGGTT
Found at i:226786 original size:15 final size:15
Alignment explanation
Indices: 226766--226803 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
226756 AATCGCATTA
226766 GCACATGACCTGTAT
1 GCACATGACCTGTAT
226781 GCACATGACCTGTAT
1 GCACATGACCTGTAT
*
226796 GCATATGA
1 GCACATGA
226804 TATATTAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (15 bp):
GCACATGACCTGTAT
Found at i:232885 original size:22 final size:21
Alignment explanation
Indices: 232846--232899 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
232836 AAAACATTTG
*
232846 TTGTTTTGCTTTTATTTT-TTT
1 TTGTTTTG-TTTTATTTTCCTT
*
232867 ATTGTTTTGTTGTTGTTTTCCTT
1 -TTGTTTTGTT-TTATTTTCCTT
232890 TTGTTTTGTT
1 TTGTTTTGTT
232900 ACTATTTCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.07
22 24 0.86
23 2 0.07
ACGTcount: A:0.04, C:0.06, G:0.15, T:0.76
Consensus pattern (21 bp):
TTGTTTTGTTTTATTTTCCTT
Found at i:265992 original size:58 final size:58
Alignment explanation
Indices: 265930--266105 Score: 184
Period size: 60 Copynumber: 3.0 Consensus size: 58
265920 ACAATTTTTT
*
265930 GTGTTAGCTATGCAATGGTCGACACCTCCTTTTTGAGAAAAAAAAATTGCATTTTTGG
1 GTGTTAGCTATGCAATGGCCGACACCTCCTTTTTGAGAAAAAAAAATTGCATTTTTGG
* * * *
265988 GTGTTAGCCATTGC-ATGGCCGACA-CTCCCTTTTTGAG-AAAAAAATTTTCAAAATTTTTTG
1 GTGTTAGCTA-TGCAATGGCCGACACCT-CCTTTTTGAGAAAAAAAAATTGC---ATTTTTGG
* * *
266048 GTGTTGGCTATGCAATGGGCGACATCC-CCTTTTT--CAAAAAAAAATTGCATTTTTGG
1 GTGTTAGCTATGCAATGGCCGACA-CCTCCTTTTTGAGAAAAAAAAATTGCATTTTTGG
266104 GT
1 GT
266106 ATTGACCATG
Statistics
Matches: 97, Mismatches: 12, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
56 9 0.09
57 12 0.12
58 28 0.29
59 16 0.16
60 31 0.32
62 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (58 bp):
GTGTTAGCTATGCAATGGCCGACACCTCCTTTTTGAGAAAAAAAAATTGCATTTTTGG
Found at i:266219 original size:59 final size:60
Alignment explanation
Indices: 266118--266252 Score: 163
Period size: 59 Copynumber: 2.3 Consensus size: 60
266108 TGACCATGCT
* * *
266118 TTTTTTGAG-AAAAAATTTTCAAAATTTTTTGGTGTTGACATGCAATAACTGACACCC-C
1 TTTTTTGAGAAAAAAAATTTCAAAATTTTTTGGTATTGACATGCAATAACCGACACCCAC
* **
266176 TTTTTTGAGAAAAAAAATTTCAAAATTTTTT-GTATTAGTCATGCAATGGCCGACACCCAC
1 TTTTTTGAGAAAAAAAATTTCAAAATTTTTTGGTATT-GACATGCAATAACCGACACCCAC
*
266236 -TTTTTCA-AAAAAAAATT
1 TTTTTTGAGAAAAAAAATT
266253 GCATTTTTGG
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
58 23 0.34
59 43 0.64
60 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (60 bp):
TTTTTTGAGAAAAAAAATTTCAAAATTTTTTGGTATTGACATGCAATAACCGACACCCAC
Found at i:266359 original size:62 final size:61
Alignment explanation
Indices: 266127--266471 Score: 325
Period size: 61 Copynumber: 5.8 Consensus size: 61
266117 TTTTTTTGAG
* * ** * *
266127 AAAAAATTTTCAAAATTTTTTGGTGTT-GACATGCAATAACTGACA-CCCCTTTTTTGAGA-A
1 AAAAAATTTT-AAATTTTTTTGGTGTTGGCCATGCAATGGCCGACACCCCCTTTTTCGA-ATA
* * * * * *
266187 AAAAAATTTCAAAATTTTTT-GTATTAGTCATGCAATGGCCGACACCCACTTTTTC-AA-A
1 AAAAAATTTTAAATTTTTTTGGTGTTGGCCATGCAATGGCCGACACCCCCTTTTTCGAATA
** * * * * *
266245 AAAAAA--TTGCA-TTTTTGGGTGTGGGCTATGCAATGGCCGACACCCCTTTTTTCAAATA
1 AAAAAATTTTAAATTTTTTTGGTGTTGGCCATGCAATGGCCGACACCCCCTTTTTCGAATA
* * * *
266303 AAAAAATTTTAATTTTTTTTTGTGTTGGCCATGCAATGGTCGACACCCCCTGTTTTCGGATA
1 AAAAAATTTTAAATTTTTTTGGTGTTGGCCATGCAATGGCCGACACCCCCT-TTTTCGAATA
* * * *
266365 AAAAAAATTCAAATTTTTTTAGTGTTGG--ATTGCAATGGCCGACACCCTCTTTTCTCGAATA
1 AAAAAATTTTAAATTTTTTTGGTGTTGGCCA-TGCAATGGCCGACACCCCCTTTT-TCGAATA
266426 AAAAAATTTTAAATTTTTTTGGTGTTGGCCATGCAATGGCCGACAC
1 AAAAAATTTTAAATTTTTTTGGTGTTGGCCATGCAATGGCCGACAC
266472 TCCTATTTTA
Statistics
Matches: 232, Mismatches: 40, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
55 5 0.02
56 30 0.13
57 2 0.01
58 19 0.08
59 25 0.11
60 23 0.10
61 80 0.34
62 47 0.20
63 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (61 bp):
AAAAAATTTTAAATTTTTTTGGTGTTGGCCATGCAATGGCCGACACCCCCTTTTTCGAATA
Found at i:266451 original size:123 final size:116
Alignment explanation
Indices: 266168--266471 Score: 344
Period size: 123 Copynumber: 2.6 Consensus size: 116
266158 TGCAATAACT
* * * * * * * *
266168 GACACCCCTTTTTTGAGA-AAAAAAATTTCAAAATTTTTTGTATTAGTCATGCAATGGCCGACAC
1 GACACCCCTTTTCTCAAATAAAAAAATTTTAAATTTTTTTGTGTTGGCCATGCAATGGCCGACAC
* *
266232 CCACTTTTTCAAAAAAAAATTGCATTTTTGGGTGTGGGCTATGCAATGGCC
66 CCACTTTTTCAAAAAAAAATTGCATTTTTGAGTGTGGGATATGCAATGGCC
* * *
266283 GACACCCCTTTTTTCAAATAAAAAAATTTTAATTTTTTTTTGTGTTGGCCATGCAATGGTCGACA
1 GACACCCCTTTTCTCAAATAAAAAAATTTTAA-ATTTTTTTGTGTTGGCCATGCAATGGCCGACA
* * *
266348 CCCCCTGTTTTCGGATAAAAAAAATT-CAAATTTTTTTAGTGTTGGAT-TGCAATGGCC
65 CCCACT-TTTTC--A-AAAAAAAATTGC--A-TTTTTGAGTGTGGGATATGCAATGGCC
*
266405 GACACCCTCTTTTCTCGAATAAAAAAATTTTAAATTTTTTTGGTGTTGGCCATGCAATGGCCGAC
1 GACACCC-CTTTTCTCAAATAAAAAAATTTTAAATTTTTTT-GTGTTGGCCATGCAATGGCCGAC
266470 AC
64 AC
266472 TCCTATTTTA
Statistics
Matches: 160, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
115 16 0.10
116 12 0.08
117 31 0.19
118 5 0.03
120 2 0.01
121 10 0.06
122 25 0.16
123 59 0.37
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (116 bp):
GACACCCCTTTTCTCAAATAAAAAAATTTTAAATTTTTTTGTGTTGGCCATGCAATGGCCGACAC
CCACTTTTTCAAAAAAAAATTGCATTTTTGAGTGTGGGATATGCAATGGCC
Found at i:267459 original size:196 final size:196
Alignment explanation
Indices: 267125--267516 Score: 775
Period size: 196 Copynumber: 2.0 Consensus size: 196
267115 TATTATATCT
267125 GTAAATTTATTTTTTAAATTTCGTGTATTAATATTAACAAATAATTGTAACTTATTGTATCTGTA
1 GTAAATTTATTTTTTAAATTTCGTGTATTAATATTAACAAATAATTGTAACTTATTGTATCTGTA
267190 AATTTAATTTGTTGCTTATTAATATTCAAACACAATATTTATATTTTCTTGTATTAAAATAATTT
66 AATTTAATTTGTTGCTTATTAATATTCAAACACAATATTTATATTTTCTTGTATTAAAATAATTT
267255 CGAATTATATATAAAAATATTAAATATGTTGTCAAAATGTGGGGAAATAAATATTATTGACAAAA
131 CGAATTATATATAAAAATATTAAATATGTTGTCAAAATGTGGGGAAATAAATATTATTGACAAAA
267320 A
196 A
267321 GTAAATTTATTTTTTAAATTTCGTGTATTAATATTAACAAATAATTGTAACTTATTGTATCTGTA
1 GTAAATTTATTTTTTAAATTTCGTGTATTAATATTAACAAATAATTGTAACTTATTGTATCTGTA
*
267386 AATTTAATTTGTTGCTTATTAATATTCAAACACAATATTTGTATTTTCTTGTATTAAAATAATTT
66 AATTTAATTTGTTGCTTATTAATATTCAAACACAATATTTATATTTTCTTGTATTAAAATAATTT
267451 CGAATTATATATAAAAATATTAAATATGTTGTCAAAATGTGGGGAAATAAATATTATTGACAAAA
131 CGAATTATATATAAAAATATTAAATATGTTGTCAAAATGTGGGGAAATAAATATTATTGACAAAA
267516 A
196 A
267517 TGATATAAAT
Statistics
Matches: 195, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
196 195 1.00
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (196 bp):
GTAAATTTATTTTTTAAATTTCGTGTATTAATATTAACAAATAATTGTAACTTATTGTATCTGTA
AATTTAATTTGTTGCTTATTAATATTCAAACACAATATTTATATTTTCTTGTATTAAAATAATTT
CGAATTATATATAAAAATATTAAATATGTTGTCAAAATGTGGGGAAATAAATATTATTGACAAAA
A
Found at i:267582 original size:31 final size:33
Alignment explanation
Indices: 267531--267597 Score: 93
Period size: 31 Copynumber: 2.1 Consensus size: 33
267521 ATAAATTTTA
* * *
267531 AAAAAATAATAATTAGAATATGCAGTAAATTAG
1 AAAAAATAATAATTAAAATATACAATAAATTAG
267564 AAAAAA-AA-AATTAAAATATACAATAAATTAG
1 AAAAAATAATAATTAAAATATACAATAAATTAG
267595 AAA
1 AAA
267598 TTAAATTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 23 0.74
32 2 0.06
33 6 0.19
ACGTcount: A:0.66, C:0.03, G:0.07, T:0.24
Consensus pattern (33 bp):
AAAAAATAATAATTAAAATATACAATAAATTAG
Found at i:267610 original size:30 final size:30
Alignment explanation
Indices: 267547--267639 Score: 89
Period size: 30 Copynumber: 3.1 Consensus size: 30
267537 TAATAATTAG
* * ** *
267547 AATATGCAGTAAATTAGAAAAAAAAAATTAA
1 AATATACAATAAATTAG-AAATTAAATTTAA
267578 AATATACAATAAATTAGAAATTAAATTTAA
1 AATATACAATAAATTAGAAATTAAATTTAA
* * *
267608 AATA-AAAACGAAATTACAAATTAAATTTAA
1 AATATACAA-TAAATTAGAAATTAAATTTAA
267638 AA
1 AA
267640 AGTAAACGGA
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
29 3 0.06
30 35 0.66
31 15 0.28
ACGTcount: A:0.63, C:0.04, G:0.05, T:0.27
Consensus pattern (30 bp):
AATATACAATAAATTAGAAATTAAATTTAA
Found at i:269980 original size:84 final size:83
Alignment explanation
Indices: 269827--270023 Score: 254
Period size: 84 Copynumber: 2.3 Consensus size: 83
269817 ATTTAAAATA
*
269827 TGATAAAAATTGTAATATATTAATAATAATTTTCATTTAAATATTTAAAATTAATAAATAATGTA
1 TGATAAAAATTGT-A-ATA-TAATAATAATTTTCATTTAAATATTGAAAATTAATAAATAATGTA
*
269892 TTGTCAAATCAACACATTATT
63 TTGTCAAATCAACACAATATT
* *
269913 TGATAAAAATTGTAATATAATAATAATTTGT-ACTTTAAATA-TGAAATTTTGATAAATAATGTA
1 TGATAAAAATTGTAATATAATAATAATTT-TCA-TTTAAATATTGAAA-ATTAATAAATAATGTA
* *
269976 TTGTCAAATTAACATAATATT
63 TTGTCAAATCAACACAATATT
* *
269997 TTATATAAATTGTAATATAATAATAAT
1 TGATAAAAATTGTAATATAATAATAAT
270024 ATTTTTTATT
Statistics
Matches: 100, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
83 17 0.17
84 69 0.69
85 1 0.01
86 13 0.13
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (83 bp):
TGATAAAAATTGTAATATAATAATAATTTTCATTTAAATATTGAAAATTAATAAATAATGTATTG
TCAAATCAACACAATATT
Found at i:270170 original size:12 final size:12
Alignment explanation
Indices: 270153--270200 Score: 51
Period size: 12 Copynumber: 3.7 Consensus size: 12
270143 AAACATGTTC
270153 ATTAATTTCCAA
1 ATTAATTTCCAA
270165 ATTAATTTCAACTTAA
1 ATTAATTTC--C--AA
*
270181 ATTAATTTTCAA
1 ATTAATTTCCAA
270193 ATTAATTT
1 ATTAATTT
270201 TTACACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
12 19 0.61
14 2 0.06
16 10 0.32
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTAATTTCCAA
Found at i:270199 original size:16 final size:16
Alignment explanation
Indices: 270163--270197 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
270153 ATTAATTTCC
*
270163 AAATTAATTTCAACTT
1 AAATTAATTTCAAATT
270179 AAATTAATTTTCAAATT
1 AAATTAA-TTTCAAATT
270196 AA
1 AA
270198 TTTTTACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (16 bp):
AAATTAATTTCAAATT
Found at i:270210 original size:28 final size:28
Alignment explanation
Indices: 270153--270210 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
270143 AAACATGTTC
**
270153 ATTAATTTCCAAATTAATTTCAACTTAA
1 ATTAATTTCCAAATTAATTTCAACACAA
* **
270181 ATTAATTTTCAAATTAATTTTTACACAA
1 ATTAATTTCCAAATTAATTTCAACACAA
270209 AT
1 AT
270211 ATTCTTCGTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (28 bp):
ATTAATTTCCAAATTAATTTCAACACAA
Done.