genome.fa.s15121.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015121.1 Kokia drynarioides strain JFW-HI SEQ_130165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  186149

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
851--1160	57	5.4	55	77	17	169	30	26	3	39	1.72
846--1160	28	11.0	27	72	20	155	30	26	3	39	1.72
916--1255	59	5.8	58	74	14	229	29	26	5	39	1.77
1497--1695	97	2.0	98	83	6	253	30	16	13	39	1.87
2280--2455	87	2.0	89	83	6	225	38	14	9	38	1.79
2575--2651	10	7.7	10	69	9	50	64	2	0	32	1.07
2745--2983	89	2.6	90	81	9	256	35	9	17	37	1.83
2791--2989	89	2.2	91	85	3	260	35	7	17	39	1.78
4755--4793	20	2.0	20	84	0	51	33	10	0	56	1.33
5687--6514	150	5.6	146	83	9	943	44	9	3	42	1.53
5731--6514	147	5.3	147	88	5	1104	45	9	2	42	1.52
5731--6491	296	2.6	296	88	5	1173	45	9	2	42	1.52
7039--7069	3	10.3	3	100	0	62	67	0	0	32	0.91
17573--17656	30	2.8	30	85	7	107	45	3	0	51	1.18
18318--18514	99	2.0	99	100	0	394	30	14	19	35	1.91
21361--21435	30	2.6	27	79	14	80	33	16	29	21	1.95
22679--22765	25	3.5	24	80	12	95	31	24	14	29	1.95
28555--28679	25	5.0	25	80	1	133	30	24	16	28	1.96
34871--35039	68	2.5	69	83	5	211	34	17	5	42	1.72
35022--35063	22	2.0	22	90	4	68	42	16	2	38	1.61
35042--35282	94	2.6	94	83	4	315	37	19	7	36	1.80
43489--43529	11	3.5	12	78	15	50	29	4	2	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43489--43537	24	2.1	23	85	11	64	30	4	2	63	1.24
50103--50136	15	2.2	16	89	5	52	67	0	0	32	0.91
50429--50460	2	16.0	2	100	0	64	50	0	0	50	1.00
58164--58352	79	2.4	79	89	0	306	21	18	27	32	1.96
64059--64213	24	6.5	24	90	3	231	27	23	24	24	2.00
69051--69113	24	2.6	24	84	0	81	49	9	15	25	1.75
72274--72540	118	2.2	122	89	3	398	25	22	16	35	1.95
85626--85653	2	14.0	2	100	0	56	50	0	0	50	1.00
88659--88729	32	2.2	32	94	0	124	18	5	26	49	1.69
98026--98150	59	2.1	60	84	1	162	51	8	12	28	1.67
98465--98495	15	2.1	15	93	0	53	25	3	0	70	1.02
98499--98574	33	2.3	32	84	10	93	68	0	5	26	1.11
99992--100020	2	14.5	2	100	0	58	51	0	0	48	1.00
100019--100061	22	1.9	23	85	4	61	32	6	6	53	1.55
105090--105158	3	23.0	3	100	0	138	66	0	0	33	0.92
115719--115775	30	1.9	30	82	13	73	36	0	0	63	0.95
115727--115789	23	2.7	24	80	2	65	30	0	1	68	0.99
117035--117236	108	1.9	108	94	0	359	27	30	16	24	1.97
130489--130519	16	1.9	16	93	0	53	51	3	19	25	1.62
131108--131299	61	3.2	60	79	3	197	36	11	18	33	1.86
135781--135811	16	1.9	16	93	0	53	51	3	19	25	1.62
136380--136526	60	2.4	60	86	1	195	31	12	20	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138363--138421	29	2.0	29	93	0	100	55	1	0	42	1.09
142823--142986	71	2.3	71	82	2	195	31	21	15	30	1.95
142992--143107	58	2.0	58	88	3	171	30	18	17	33	1.94
145851--146034	37	5.0	37	77	7	169	34	27	17	19	1.95
152942--153127	37	5.0	37	77	7	173	32	27	19	20	1.97
153102--153146	16	2.8	16	89	0	63	26	31	26	15	1.96
154909--155137	114	2.0	115	94	0	406	27	22	20	28	1.99
162539--162575	17	2.2	16	86	9	56	32	5	21	40	1.76
164378--164437	8	7.5	8	74	12	52	30	1	3	65	1.19
164367--164426	30	2.0	29	87	3	84	28	5	1	65	1.23
164346--164436	38	2.3	40	79	11	107	30	5	3	60	1.35
183262--183316	29	1.9	28	82	10	67	49	3	0	47	1.19

Tables:   1

The End!