genome.fa.s15122.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015122.1 Kokia drynarioides strain JFW-HI SEQ_130166, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135206

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4003--4956	477	2.0	477	97	0	1809	39	18	10	32	1.84
24726--24762	16	2.4	16	86	8	51	64	0	2	32	1.07
24845--24902	27	2.1	27	93	0	98	10	32	17	39	1.83
37490--37535	25	1.9	23	86	8	65	36	2	6	54	1.39
38603--38645	18	2.3	19	88	8	61	23	2	2	72	1.08
41502--41561	6	10.3	6	85	3	79	18	1	1	78	0.92
41503--41562	22	2.6	22	89	5	84	20	1	1	76	0.96
42482--42520	13	2.9	14	80	7	53	74	2	15	7	1.15
42497--42554	20	3.2	18	78	21	68	81	0	12	6	0.88
42497--42560	19	3.5	19	85	12	89	81	1	10	6	0.94
43571--43616	25	1.9	23	86	8	65	36	4	4	54	1.40
46756--46798	22	2.0	22	85	0	59	37	20	4	37	1.74
46786--46825	21	1.9	21	89	0	62	50	25	0	25	1.50
46839--46872	14	2.4	14	90	0	50	23	8	32	35	1.86
48271--48309	21	1.9	20	89	5	60	79	15	0	5	0.90
51952--52284	59	5.7	57	76	10	253	34	3	25	36	1.73
51957--52303	30	11.7	30	71	10	191	34	2	24	38	1.70
54067--54144	18	4.4	17	71	13	59	47	7	2	42	1.46
55089--55266	97	1.8	98	86	4	261	52	2	12	32	1.52
55670--55706	16	2.1	19	85	14	53	43	0	0	56	0.99
65259--65312	21	2.5	21	85	11	74	38	1	3	55	1.28
66077--66123	20	2.3	20	82	7	60	51	10	0	38	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66331--66420	9	10.5	8	68	23	51	22	3	5	68	1.25
67689--67716	2	14.0	2	100	0	56	50	0	0	50	1.00
70050--70078	12	2.4	12	100	0	58	0	6	0	93	0.36
70918--70975	31	1.9	30	82	10	73	60	1	0	37	1.07
72736--72794	28	2.1	27	81	9	66	28	8	5	57	1.50
72824--72870	23	2.0	24	87	8	69	46	14	14	23	1.82
75842--75933	46	2.0	46	100	0	184	28	19	4	47	1.68
86240--86291	17	3.1	17	78	15	56	40	1	0	57	1.10
86246--86297	17	3.1	17	78	13	54	42	5	0	51	1.25
97874--97907	17	2.0	17	88	0	50	73	0	5	20	1.04
98025--98111	17	5.3	18	75	20	68	44	1	2	51	1.21
98024--98111	46	1.9	46	86	13	128	44	1	2	52	1.21
98044--98109	29	2.3	28	86	2	87	43	1	1	53	1.19
99382--99676	30	10.1	29	72	14	180	36	23	2	38	1.66
99384--99675	59	5.0	58	75	9	238	36	22	2	39	1.66
110955--111967	205	4.9	209	85	3	1102	36	18	21	23	1.95
110955--111978	208	5.0	207	84	5	876	37	18	21	23	1.94
112348--112483	17	8.2	17	74	18	110	41	0	2	54	1.21
112363--112483	6	21.0	6	70	14	94	41	0	2	55	1.19
112363--112433	23	3.1	23	97	0	133	39	0	2	57	1.13
112714--112739	12	2.2	12	100	0	52	23	26	15	34	1.94
114293--114557	29	8.9	29	78	13	238	36	24	1	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114300--114557	59	4.4	58	82	8	265	36	24	1	36	1.65
114300--114559	30	8.8	30	79	13	157	36	25	1	36	1.67
120483--120543	23	2.4	25	74	23	65	49	0	1	49	1.10
132320--132364	12	3.8	12	85	5	65	53	13	15	17	1.73
132919--132988	29	2.3	30	87	4	97	38	0	12	48	1.42
134698--134724	14	1.9	14	100	0	54	44	0	18	37	1.50
135158--135206	15	2.9	16	75	19	55	44	0	2	53	1.12

Tables:   1

The End!