genome.fa.s15124.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015124.1 Kokia drynarioides strain JFW-HI SEQ_130168, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159680

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1771--1911	72	2.0	72	86	0	201	28	13	19	38	1.90
5585--5642	27	2.1	27	81	6	64	36	6	1	55	1.37
6605--6652	24	2.0	24	87	0	69	64	0	0	35	0.94
11672--11714	17	2.5	17	88	0	68	39	0	2	58	1.11
17127--17178	26	2.0	26	100	0	104	23	34	11	30	1.90
22048--22095	25	1.9	26	83	8	64	39	2	2	56	1.23
31200--31256	29	1.9	30	85	3	80	29	5	14	50	1.64
31600--31676	31	2.5	31	76	14	77	27	5	6	61	1.42
34265--34295	7	4.4	7	100	0	62	25	45	0	29	1.54
37550--37581	16	2.0	16	93	0	55	28	18	21	31	1.97
39932--39982	21	2.4	22	83	3	59	60	11	9	17	1.57
41942--41992	24	2.1	24	88	0	75	27	9	5	56	1.54
43924--43970	24	2.0	24	95	0	85	23	12	8	55	1.64
43932--43986	24	2.3	24	83	0	65	27	16	9	47	1.76
45081--45132	25	2.1	25	82	7	61	5	15	13	65	1.44
45638--45680	22	1.9	23	85	4	61	60	2	0	37	1.10
53663--53766	51	2.0	51	83	0	127	41	6	23	28	1.79
72082--72125	17	2.6	17	96	0	79	36	2	15	45	1.59
73843--74402	73	7.7	73	89	0	843	24	29	18	27	1.98
74982--75031	14	3.4	14	78	8	55	34	2	0	64	1.05
74982--75035	15	3.6	16	74	18	53	35	1	0	62	1.06
75892--75925	13	2.6	13	100	0	68	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76219--76243	2	12.5	2	100	0	50	48	0	0	52	1.00
84085--84291	87	2.4	87	88	0	306	27	18	17	36	1.93
86961--87031	17	4.3	16	83	5	79	43	0	5	50	1.25
87065--87123	15	3.8	15	78	8	64	42	27	11	18	1.85
87087--87120	17	2.0	17	88	0	50	35	35	11	17	1.87
87765--87814	19	2.5	21	87	6	68	54	4	2	40	1.31
88836--89157	30	10.9	29	80	10	350	34	27	3	33	1.75
88840--89224	59	6.6	58	84	7	428	34	28	4	32	1.77
88840--89198	30	12.2	30	76	14	286	34	27	4	33	1.78
88840--89224	176	2.2	176	85	6	494	34	28	4	32	1.77
94012--94045	17	1.9	18	94	5	61	35	0	0	64	0.94
94571--94642	29	2.4	29	86	6	92	52	2	0	44	1.15
98430--98456	14	1.9	14	100	0	54	59	11	0	29	1.32
106861--106908	21	2.2	23	85	7	64	6	8	18	66	1.39
107740--107766	3	9.0	3	100	0	54	0	33	0	66	0.92
108194--108235	8	5.2	8	83	11	59	38	0	0	61	0.96
108194--108235	15	2.6	17	81	11	61	38	0	0	61	0.96
110950--111021	35	2.1	35	97	0	135	13	6	13	65	1.46
111718--111758	19	2.2	18	86	4	55	58	0	4	36	1.20
117291--117333	22	2.0	22	86	4	61	53	2	2	41	1.26
118267--118293	8	3.4	8	100	0	54	48	0	0	51	1.00
121867--121907	20	2.0	20	90	9	66	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128624--128704	2	40.5	2	100	0	162	49	0	0	50	1.00
128755--128797	2	21.5	2	100	0	86	48	0	0	51	1.00
133219--133246	2	14.0	2	100	0	56	50	50	0	0	1.00
136438--136520	28	2.8	29	81	7	96	37	18	3	40	1.68
136472--136754	29	9.6	28	69	17	107	34	23	4	37	1.75
136535--136638	30	3.5	31	76	11	108	33	25	2	37	1.71
136441--136627	58	3.2	57	74	11	148	34	24	3	37	1.73
136535--136759	88	2.5	88	78	11	221	35	23	4	36	1.77
136624--136841	88	2.5	86	79	3	211	37	22	5	33	1.79
136797--136869	27	2.6	29	80	6	89	27	27	12	32	1.92
151879--151911	15	2.2	15	100	0	66	33	33	6	27	1.81
151883--151921	15	2.6	15	88	8	53	33	33	10	23	1.88
154597--154852	31	8.3	31	100	0	512	41	16	0	42	1.47

Tables:   1

The End!