Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015125.1 Kokia drynarioides strain JFW-HI SEQ_130169, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 26746
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34

Warning! 176 characters in sequence are not A, C, G, or T


Found at i:431 original size:20 final size:20

Alignment explanation


    Indices: 406--449  Score: 63
    Period size: 20  Copynumber: 2.2  Consensus size: 20

        396 CTTCATACTT

                  *              
        406 TTTTTTTAA-ATTTCTATAAA
          1 TTTTTTGAATATTT-TATAAA

                                
        426 TTTTTTGAATATTTTATAAA
          1 TTTTTTGAATATTTTATAAA

                
        446 TTTT
          1 TTTT

        450 AAATAATTTA


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  20   18  0.82
  21    4  0.18

ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64


Consensus pattern (20 bp):   
TTTTTTGAATATTTTATAAA

Found at i:18211 original size:11 final size:11

Alignment explanation


    Indices: 18195--18233  Score: 51
    Period size: 11  Copynumber: 3.4  Consensus size: 11

      18185 GATTAGTATA

                       
      18195 TTATAATATGT
          1 TTATAATATGT

                        
      18206 TTATAATATGAT
          1 TTATAATATG-T

             *          
      18218 ACTATAATATGT
          1 -TTATAATATGT

                
      18230 TTAT
          1 TTAT

      18234 TTTTTTTGTA


Statistics
Matches: 24,  Mismatches: 2, Indels: 4
        0.80            0.07        0.13

Matches are distributed among these distances:
  11   13  0.54
  12    2  0.08
  13    9  0.38

ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51


Consensus pattern (11 bp):   
TTATAATATGT
Done.