genome.fa.s15127.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015127.1 Kokia drynarioides strain JFW-HI SEQ_130171, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  179612

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6927--6996	31	2.3	31	87	0	104	48	15	15	20	1.81
12155--12219	32	2.0	32	100	0	130	33	6	16	43	1.73
15739--15783	14	3.1	14	83	3	63	26	17	2	53	1.56
15739--15798	29	2.1	29	87	0	84	23	16	3	56	1.55
15739--15786	15	3.3	15	82	5	62	27	18	2	52	1.57
24186--24253	14	4.4	16	75	17	63	38	0	2	58	1.13
27414--27478	30	2.2	30	94	0	112	21	3	15	60	1.49
28678--28711	17	2.0	17	94	0	59	32	23	8	35	1.86
28894--28943	20	2.5	20	87	3	66	48	0	4	48	1.20
31690--31731	22	1.9	22	85	0	57	38	11	7	42	1.69
39250--39308	31	1.9	31	85	0	82	37	6	10	45	1.65
39433--39494	29	2.1	30	87	3	90	53	9	3	33	1.50
39640--39711	29	2.4	29	83	4	90	33	12	9	44	1.75
39903--39931	14	2.1	14	100	0	58	93	0	6	0	0.36
43605--43655	17	3.1	17	72	11	52	64	7	3	23	1.37
43580--43655	32	2.3	33	84	6	102	61	7	3	26	1.41
45608--45658	18	2.8	18	84	0	66	25	29	19	25	1.99
46246--46843	300	2.0	300	94	0	1045	30	17	22	29	1.97
50011--50112	47	2.2	47	92	0	168	28	25	14	31	1.95
59447--59620	86	2.0	86	97	0	330	36	15	10	36	1.83
65957--66021	9	6.8	9	78	18	60	24	1	1	72	1.02
66037--66101	19	3.4	19	84	16	82	35	0	6	58	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68641--68669	13	2.1	14	93	6	51	34	6	0	58	1.25
69224--69269	23	2.0	23	91	0	74	52	4	0	43	1.21
70266--70308	20	2.1	20	86	4	59	37	9	13	39	1.78
75463--75673	18	11.7	18	78	4	138	22	21	18	37	1.94
75465--75673	54	3.9	54	81	2	215	22	22	17	37	1.94
80253--80279	3	9.0	3	100	0	54	66	0	0	33	0.92
80563--80594	6	5.3	6	100	0	64	0	0	65	34	0.93
81648--81679	2	16.0	2	100	0	64	50	0	0	50	1.00
83638--83676	19	2.1	19	86	13	55	41	2	0	56	1.13
84090--84137	24	2.0	24	100	0	96	66	0	8	25	1.19
84594--84698	31	3.5	31	87	7	146	47	11	3	37	1.58
87206--87585	127	3.0	127	96	0	706	33	13	13	39	1.84
96779--96820	20	2.0	21	86	4	59	50	0	2	47	1.14
96794--96854	17	3.4	17	73	15	52	50	4	1	42	1.33
99991--100104	23	5.0	23	82	5	151	14	19	22	42	1.88
101603--101635	17	2.0	17	88	5	50	45	0	0	54	0.99
105331--105357	3	9.0	3	100	0	54	0	0	33	66	0.92
105383--105408	3	8.7	3	100	0	52	0	30	34	34	1.58
106954--107002	17	2.6	19	81	15	66	48	8	2	40	1.44
106964--107001	17	2.2	17	95	0	67	50	10	0	39	1.37
107895--107924	4	7.5	4	100	0	60	26	0	23	50	1.50
114580--114621	20	2.0	21	86	4	59	69	2	0	28	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114580--114662	19	4.3	19	70	10	69	60	2	1	36	1.18
122113--122174	14	4.4	14	74	10	63	14	0	41	43	1.45
122113--122195	42	2.0	42	85	4	114	16	0	39	43	1.48
124701--124727	11	2.5	11	100	0	54	29	0	0	70	0.88
124702--124777	39	1.9	38	85	15	102	39	1	0	59	1.06
128024--128844	39	20.8	39	82	8	878	25	8	4	62	1.42
128024--128870	196	4.3	196	81	7	878	25	8	4	62	1.41
128546--128649	18	5.2	21	66	21	71	21	8	5	64	1.43
128975--129123	27	5.5	28	76	4	101	37	14	28	20	1.91
129084--129170	27	3.2	27	82	6	79	39	17	25	18	1.92
152129--152162	17	2.0	17	88	0	50	58	2	23	14	1.50
152873--152918	17	2.7	17	86	0	56	10	19	32	36	1.87
158091--158254	67	2.6	66	86	7	225	54	4	0	40	1.20
158786--158870	39	2.2	40	79	10	95	30	15	23	30	1.95
158801--159098	39	7.6	38	67	14	142	25	15	26	32	1.95
158807--159098	79	3.7	77	83	4	334	25	15	26	32	1.95
159120--159218	50	2.0	50	80	4	110	24	25	17	33	1.96
161538--161571	15	2.3	15	94	0	59	47	32	5	14	1.69
161597--161651	14	4.0	14	84	11	69	14	10	27	47	1.78
161597--161651	21	2.7	21	88	2	85	14	10	27	47	1.78
166322--166449	28	4.6	28	85	3	134	35	32	13	19	1.90
166932--167067	68	2.0	68	100	0	272	52	17	4	25	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168008--168208	101	2.0	101	92	0	330	36	15	10	36	1.83
168576--168732	81	1.9	82	79	8	178	32	12	11	43	1.78
172046--172369	24	13.5	24	86	0	423	37	15	25	21	1.92
174671--174735	29	2.2	29	94	0	112	21	29	32	16	1.96
177299--177342	22	1.9	24	86	9	65	54	2	0	43	1.12
177582--177621	21	1.9	21	85	10	55	37	17	0	45	1.49

Tables:   1

The End!