Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015135.1 Kokia drynarioides strain JFW-HI SEQ_130179, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68598
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.34
Found at i:3701 original size:16 final size:17
Alignment explanation
Indices: 3668--3703 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
3658 TAGCACCAAA
3668 TATAATAAATATTTTAT
1 TATAATAAATATTTTAT
*
3685 TATATTAAATA-TTTAT
1 TATAATAAATATTTTAT
3701 TAT
1 TAT
3704 TGTATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TATAATAAATATTTTAT
Found at i:3703 original size:19 final size:19
Alignment explanation
Indices: 3668--3720 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
3658 TAGCACCAAA
*
3668 TATAATAAATA-TT-TTAT
1 TATATTAAATATTTATTAT
3685 TATATTAAATATTTATTAT
1 TATATTAAATATTTATTAT
* *
3704 TGTATTAAATATATATT
1 TATATTAAATATTTATT
3721 TTAAAATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
17 10 0.32
18 2 0.06
19 19 0.61
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TATATTAAATATTTATTAT
Found at i:9830 original size:3 final size:3
Alignment explanation
Indices: 9824--9854 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
9814 ACGTTTCCAC
9824 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
9855 GGATAAACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:10681 original size:3 final size:3
Alignment explanation
Indices: 10666--10700 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
10656 TAGTTTACCC
*
10666 TTA TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
10701 TGAAGCCTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:12041 original size:27 final size:27
Alignment explanation
Indices: 12011--12075 Score: 130
Period size: 27 Copynumber: 2.4 Consensus size: 27
12001 TATTTATTTT
12011 TATTATTATTTTTTATAATAAATAAAA
1 TATTATTATTTTTTATAATAAATAAAA
12038 TATTATTATTTTTTATAATAAATAAAA
1 TATTATTATTTTTTATAATAAATAAAA
12065 TATTATTATTT
1 TATTATTATTT
12076 ATTTTTTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
TATTATTATTTTTTATAATAAATAAAA
Found at i:12305 original size:18 final size:18
Alignment explanation
Indices: 12284--12319 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
12274 CCATAAAAAA
12284 TAAAATATACATTTAAAT
1 TAAAATATACATTTAAAT
* *
12302 TAAACTATATATTTAAAT
1 TAAAATATACATTTAAAT
12320 ATTATATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATATACATTTAAAT
Found at i:12434 original size:22 final size:21
Alignment explanation
Indices: 12384--12437 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
12374 TGACTCTATC
*
12384 AAAAAATTAAATTTAAATTTTT
1 AAAAAA-TAAATTTAAATTATT
12406 AAAAAATAAATATTAAA-TATT
1 AAAAAATAAAT-TTAAATTATT
12427 AAACAAATAAA
1 AAA-AAATAAA
12438 AAAGCTGACA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 11 0.38
22 18 0.62
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAAATAAATTTAAATTATT
Found at i:13887 original size:43 final size:43
Alignment explanation
Indices: 13834--13921 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
13824 AGGGAGAGCC
* * *
13834 TTCATTCTTCTAGTATTGGTGCACAAAGCAGGGCTTGGGCAAT
1 TTCAGTCTTCTAGTATTGGTGCACAAAGCAGGGCATAGGCAAT
* * *
13877 TTCAGTCTTCTATTATTGTTGCACAAAGTAGGGCATAGGCAAT
1 TTCAGTCTTCTAGTATTGGTGCACAAAGCAGGGCATAGGCAAT
13920 TT
1 TT
13922 AATTTAACAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (43 bp):
TTCAGTCTTCTAGTATTGGTGCACAAAGCAGGGCATAGGCAAT
Found at i:34235 original size:2 final size:2
Alignment explanation
Indices: 34228--34273 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
34218 ATTTTTAATA
34228 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34270 AT AT
1 AT AT
34274 TACTTAAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44480 original size:25 final size:24
Alignment explanation
Indices: 44446--44493 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
44436 AAATATTTTA
*
44446 TTATGTAAAAATAAATTTTATAAAT
1 TTATATAAAAAT-AATTTTATAAAT
*
44471 TTATATAAAAATAATTTTTTAAA
1 TTATATAAAAATAATTTTATAAA
44494 CTTAAATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (24 bp):
TTATATAAAAATAATTTTATAAAT
Found at i:45262 original size:3 final size:3
Alignment explanation
Indices: 45254--45285 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
45244 CTCTGCATGT
45254 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
45286 GTCAAACACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:45771 original size:44 final size:44
Alignment explanation
Indices: 45722--45821 Score: 130
Period size: 44 Copynumber: 2.3 Consensus size: 44
45712 ACAATAGTAA
* * * *
45722 AATAAAAATAACATCCAAACAACTAAAATAACAACCAAAACAAC
1 AATAAAAATAACAGCAAAACAACAAAAATAACAACAAAAACAAC
* * *
45766 AATAAAAATAACAGCAAAACAACAAAAATAGCAACAAAAATAGC
1 AATAAAAATAACAGCAAAACAACAAAAATAACAACAAAAACAAC
45810 -ATAAAAATAACA
1 AATAAAAATAACA
45822 ACATCAAAAC
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 12 0.24
44 37 0.76
ACGTcount: A:0.68, C:0.18, G:0.03, T:0.11
Consensus pattern (44 bp):
AATAAAAATAACAGCAAAACAACAAAAATAACAACAAAAACAAC
Found at i:45784 original size:12 final size:12
Alignment explanation
Indices: 45739--45824 Score: 65
Period size: 12 Copynumber: 7.6 Consensus size: 12
45729 ATAACATCCA
*
45739 AACAACTAAAAT
1 AACAACAAAAAT
* *
45751 AACAACCAAAAC
1 AACAACAAAAAT
*
45763 AACAATAAAAAT
1 AACAACAAAAAT
*
45775 AACAGC---AA-
1 AACAACAAAAAT
45783 AACAACAAAAAT
1 AACAACAAAAAT
*
45795 AGCAACAAAAAT
1 AACAACAAAAAT
* *
45807 AGC-ATAAAAAT
1 AACAACAAAAAT
45818 AACAACA
1 AACAACA
45825 TCAAAACAGT
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
8 5 0.09
9 2 0.04
11 11 0.19
12 39 0.68
ACGTcount: A:0.69, C:0.19, G:0.03, T:0.09
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:45801 original size:23 final size:22
Alignment explanation
Indices: 45725--45832 Score: 82
Period size: 23 Copynumber: 4.9 Consensus size: 22
45715 ATAGTAAAAT
*
45725 AAAAATAACATC-C-AAACAAC
1 AAAAATAACAACACAAAACAAC
*
45745 TAAAATAACAAC-CAAAACAAC
1 AAAAATAACAACACAAAACAAC
*
45766 AATAAA-AATAACAGCAAAACAAC
1 AA-AAATAACAACA-CAAAACAAC
* * *
45789 AAAAATAGCAACA-AAAATAGCAT
1 AAAAATAACAACACAAAACA--AC
45812 AAAAATAACAACATCAAAACA
1 AAAAATAACAACA-CAAAACA
45833 GTAAAAAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
20 11 0.16
21 18 0.26
22 6 0.09
23 29 0.42
25 5 0.07
ACGTcount: A:0.68, C:0.19, G:0.03, T:0.10
Consensus pattern (22 bp):
AAAAATAACAACACAAAACAAC
Found at i:45803 original size:20 final size:20
Alignment explanation
Indices: 45725--45804 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
45715 ATAGTAAAAT
* *
45725 AAAAATAACATCCAAACAAC
1 AAAAATAACAACAAAACAAC
*
45745 TAAAATAACAACCAAAACAAC
1 AAAAATAACAA-CAAAACAAC
*
45766 AATAAAAATAACAGCAAAACAAC
1 ---AAAAATAACAACAAAACAAC
*
45789 AAAAATAGCAACAAAA
1 AAAAATAACAACAAAA
45805 ATAGCATAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
20 23 0.47
21 8 0.16
23 9 0.18
24 9 0.18
ACGTcount: A:0.69, C:0.20, G:0.03, T:0.09
Consensus pattern (20 bp):
AAAAATAACAACAAAACAAC
Found at i:47730 original size:56 final size:56
Alignment explanation
Indices: 47644--47755 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
47634 TCGAAGCAAT
47644 AAAGTGACACCCAGTACCTCATCGAATCTATCCGAAGTAAAGTGGTACCCAGTACC
1 AAAGTGACACCCAGTACCTCATCGAATCTATCCGAAGTAAAGTGGTACCCAGTACC
47700 AAAGTGACACCCAGTACCTCATCGAATCTATCCGAAGTAAAGTGGTACCCAGTACC
1 AAAGTGACACCCAGTACCTCATCGAATCTATCCGAAGTAAAGTGGTACCCAGTACC
47756 TCATCGAATC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.20
Consensus pattern (56 bp):
AAAGTGACACCCAGTACCTCATCGAATCTATCCGAAGTAAAGTGGTACCCAGTACC
Found at i:47803 original size:41 final size:38
Alignment explanation
Indices: 47704--47803 Score: 128
Period size: 38 Copynumber: 2.6 Consensus size: 38
47694 AGTACCAAAG
*
47704 TGACACCCAGTACCTCATCGAATCTATCCGAAGTAAAG
1 TGACACCCAGTACCTCATCGAATCTATCCGAAGTAAAA
**
47742 TGGTACCCAGTACCTCATCGAATCTATCCGAAGTAAAA
1 TGACACCCAGTACCTCATCGAATCTATCCGAAGTAAAA
**
47780 TAAAGACACCCAGTGTCTCATCGA
1 T---GACACCCAGTACCTCATCGA
47804 CTCAAGGTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 36 0.69
41 16 0.31
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (38 bp):
TGACACCCAGTACCTCATCGAATCTATCCGAAGTAAAA
Found at i:48798 original size:12 final size:12
Alignment explanation
Indices: 48781--48805 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48771 TTTGGCTTTA
48781 ATTTATATATAT
1 ATTTATATATAT
48793 ATTTATATATAT
1 ATTTATATATAT
48805 A
1 A
48806 ATAATAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTTATATATAT
Found at i:53493 original size:30 final size:30
Alignment explanation
Indices: 53435--53495 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
53425 TATAATATAA
*
53435 ATATAAATATATATAATTATTATGTAACAT
1 ATATAAATATATATAATTATTATATAACAT
* *
53465 ATATAATTA-ATATAATTATTTTTATAACAT
1 ATATAAATATATATAATTA-TTATATAACAT
53495 A
1 A
53496 AGATATTCTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (30 bp):
ATATAAATATATATAATTATTATATAACAT
Found at i:56810 original size:23 final size:21
Alignment explanation
Indices: 56784--56842 Score: 55
Period size: 23 Copynumber: 2.6 Consensus size: 21
56774 TTTCATTTAT
*
56784 AATTTATTTATACTTTCTTATAA
1 AATTT-TTTATA-ATTCTTATAA
**
56807 AATTATTTTTATAATTCTTATCC
1 AA-T-TTTTTATAATTCTTATAA
56830 AATTTTTTATAAT
1 AATTTTTTATAAT
56843 ATTTTTTTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 10 0.32
22 1 0.03
23 11 0.35
24 7 0.23
25 2 0.06
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (21 bp):
AATTTTTTATAATTCTTATAA
Found at i:62983 original size:29 final size:29
Alignment explanation
Indices: 62942--63414 Score: 414
Period size: 29 Copynumber: 16.3 Consensus size: 29
62932 TTTTGAGAGT
62942 TTTGA-GGTCAAAAATGGGATTTTTGGAAG
1 TTTGAGGGT-AAAAATGGGATTTTTGGAAG
* *
62971 TTTAAGGGTAAAAATGGAATTTTTGGAAG
1 TTTGAGGGTAAAAATGGGATTTTTGGAAG
* * *
63000 TTTCG-GTGTCAAAAATAGAATTTTTGGAAG
1 TTT-GAGGGT-AAAAATGGGATTTTTGGAAG
* * *
63030 TTCG-GGGCTAAAAATGGAATTTATGGAAG
1 TTTGAGGG-TAAAAATGGGATTTTTGGAAG
* * * *
63059 TTTTAGGGTAAAAAAAGAGATTTTTGAAAG
1 TTTGAGGGT-AAAAATGGGATTTTTGGAAG
* *
63089 TTCGAGGGTAAAAATGGAATTTTTGGAAG
1 TTTGAGGGTAAAAATGGGATTTTTGGAAG
63118 TTTTG-GGGTCAAAAATGGGATTTTTGGAAG
1 -TTTGAGGGT-AAAAATGGGATTTTTGGAAG
* *
63148 TTCGAGGGTAAAAATGGAATTTTTGGAAG
1 TTTGAGGGTAAAAATGGGATTTTTGGAAG
* * *
63177 TTTCGAGGTTGAAAATGGTATTTTTGGAAG
1 TTT-GAGGGTAAAAATGGGATTTTTGGAAG
* *
63207 TTCGAGGGTAAAAA----ATGTTTGGAAG
1 TTTGAGGGTAAAAATGGGATTTTTGGAAG
* * **
63232 TTTCAAGGTCAAAAATGATATTTTTGGAAG
1 TTTGAGGGT-AAAAATGGGATTTTTGGAAG
* *
63262 TTCGAGGGT-AAAATGAGATTTTTGGAAG
1 TTTGAGGGTAAAAATGGGATTTTTGGAAG
* * *
63290 TTT-AGGGTTTAAAGATAGGATTTTTGAAAG
1 TTTGAGGG--TAAAAATGGGATTTTTGGAAG
*
63320 TTCGAGGGTAAAAATGGGATTTTTGGAAG
1 TTTGAGGGTAAAAATGGGATTTTTGGAAG
* *
63349 TTTCG-GGGTCAAAATGGTATTTTTGGAAG
1 TTT-GAGGGTAAAAATGGGATTTTTGGAAG
**
63378 TTCTGA-TTTAAAAATGGGATTTTTGGACAG
1 TT-TGAGGGTAAAAATGGGATTTTTGGA-AG
63408 TTT-AGGG
1 TTTGAGGG
63415 ACCTCCGAGG
Statistics
Matches: 360, Mismatches: 60, Indels: 48
0.77 0.13 0.10
Matches are distributed among these distances:
25 16 0.04
26 5 0.01
27 4 0.01
28 21 0.06
29 170 0.47
30 140 0.39
31 4 0.01
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.35
Consensus pattern (29 bp):
TTTGAGGGTAAAAATGGGATTTTTGGAAG
Found at i:63023 original size:59 final size:58
Alignment explanation
Indices: 62947--63410 Score: 493
Period size: 59 Copynumber: 8.0 Consensus size: 58
62937 AGAGTTTTGA
* **
62947 GGTCAAAAATGGGATTTTTGGAAGTTTAAGGGTAAAAATGGAATTTTTGGAAGTTTCG
1 GGTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTCG
* * *
63005 GTGTCAAAAATAGAATTTTTGGAAGTTCG-GGGCTAAAAATGGAATTTATGGAAGTTTTAG
1 G-GTCAAAAATGGAATTTTTGGAAGTTCGAGGG-TAAAAATGGAATTTTTGGAAG-TTTCG
** * *
63065 GGT-AAAAAAAGAGATTTTTGAAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTTGG
1 GGTCAAAAATGGA-ATTTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAG-TTTCG
*
63124 GGTCAAAAATGGGATTTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTCG
1 GGTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTCG
** * * *
63182 AGGTTGAAAATGGTATTTTTGGAAGTTCGAGGGT-AAAA---AATGTTTGGAAGTTTCAA
1 -GGTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTC-G
*
63238 GGTCAAAAAT-GATATTTTTGGAAGTTCGAGGGT-AAAAT-GAGATTTTTGGAAGTTTAG
1 GGTCAAAAATGGA-ATTTTTGGAAGTTCGAGGGTAAAAATGGA-ATTTTTGGAAGTTTCG
* * * *
63295 GGTTTAAAGATAGG-ATTTTTGAAAGTTCGAGGGTAAAAATGGGATTTTTGGAAGTTTCGG
1 GG-TCAAAAAT-GGAATTTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTC-G
* ** *
63355 GGTC-AAAATGGTATTTTTGGAAGTTCTGA-TTTAAAAATGGGATTTTTGGACAGTTT
1 GGTCAAAAATGGAATTTTTGGAAGTTC-GAGGGTAAAAATGGAATTTTTGGA-AGTTT
63411 AGGGACCTCC
Statistics
Matches: 349, Mismatches: 36, Indels: 41
0.82 0.08 0.10
Matches are distributed among these distances:
54 1 0.00
55 47 0.13
57 5 0.01
58 94 0.27
59 183 0.52
60 19 0.05
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.35
Consensus pattern (58 bp):
GGTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTCG
Found at i:65197 original size:17 final size:16
Alignment explanation
Indices: 65171--65213 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 16
65161 ATTTTGAAAT
65171 TAAATTTAAATTTAAAA
1 TAAA-TTAAATTTAAAA
65188 TAAATCTAAATTTAAAA
1 TAAAT-TAAATTTAAAA
65205 TAAATTAAA
1 TAAATTAAA
65214 AAGGGGGCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.20
17 20 0.80
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
TAAATTAAATTTAAAA
Done.