Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015139.1 Kokia drynarioides strain JFW-HI SEQ_130183, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  250268

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4536--4589
26
2.1
26
85
0
72
25
0
9
64
1.23
5751--5776
2
13.0
2
100
0
52
50
0
50
0
1.00
17134--17174
14
2.9
14
82
17
57
36
0
4
58
1.20
17684--17725
18
2.3
18
80
8
50
23
4
2
69
1.20
17684--17805
19
6.4
19
68
15
58
28
6
2
62
1.33
21615--21644
15
2.0
15
100
0
60
46
40
6
6
1.56
26482--26519
19
2.1
18
85
14
51
36
0
0
63
0.95
26524--26583
29
2.1
29
83
0
75
33
0
8
58
1.28
41122--41154
2
16.5
2
100
0
66
0
51
0
48
1.00
43693--43744
27
1.9
27
84
7
70
59
0
3
36
1.16
57427--57472
20
2.3
20
85
7
58
63
0
0
36
0.95
57432--57488
30
1.9
30
86
10
82
59
0
1
38
1.08
58628--58670
15
2.9
14
78
18
50
30
0
4
65
1.13
58617--58667
16
3.3
15
76
17
50
27
1
3
66
1.20
59334--59362
2
14.5
2
100
0
58
51
0
0
48
1.00
66276--66309
17
2.0
17
88
0
50
47
11
0
41
1.40
68785--68824
20
2.0
20
85
5
53
60
0
2
37
1.11
85150--85182
15
2.2
15
89
10
50
75
6
0
18
1.00
85878--85939
30
2.1
30
87
6
90
45
0
4
50
1.23
85888--85929
20
2.1
20
86
8
59
45
0
4
50
1.23
86808--86843
4
9.0
4
100
0
72
50
25
0
25
1.50
95614--95646
2
16.5
2
100
0
66
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97581--97619
18
2.1
19
85
4
53
38
5
2
53
1.37
119457--119517
32
1.9
32
93
0
104
29
19
6
44
1.76
119463--119538
31
2.4
32
86
2
100
28
18
9
43
1.81
119490--119606
62
1.9
62
82
3
148
22
17
12
47
1.81
119412--119596
92
2.0
92
81
2
219
24
17
11
46
1.81
119503--119622
60
2.0
59
82
6
143
19
16
15
49
1.80
120001--120113
60
1.9
60
87
1
165
49
7
15
27
1.71
120670--120707
3
12.7
3
94
0
67
31
0
2
65
1.06
147725--147768
16
2.5
19
82
17
67
34
4
0
61
1.16
157138--157329
29
6.6
29
76
10
133
32
1
29
36
1.65
157166--157502
58
5.8
58
76
12
273
34
3
25
35
1.74
157175--157357
30
6.2
30
73
17
100
33
2
26
37
1.69
157166--157460
117
2.5
115
80
8
301
35
4
26
34
1.75
157375--157507
30
4.5
28
74
10
88
33
3
24
38
1.74
157172--157507
117
2.9
117
78
9
287
34
3
25
36
1.74
159332--159365
6
5.7
6
85
0
50
47
0
0
52
1.00
159331--159373
18
2.4
18
80
0
50
51
0
0
48
1.00
165583--165643
29
2.1
29
81
6
70
62
1
14
21
1.41
167205--167371
24
6.9
24
85
3
192
29
24
20
25
1.99
167353--167406
27
2.0
28
88
3
83
38
22
16
22
1.93
170459--170492
11
3.0
11
86
4
50
50
44
2
2
1.32
171766--171796
2
15.5
2
93
0
53
48
0
3
48
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
175684--175769
43
2.0
44
93
2
147
23
17
15
44
1.86
177543--177567
13
1.9
13
100
0
50
16
16
24
44
1.86
179410--179447
16
2.4
16
83
12
51
55
0
7
36
1.29
181260--181305
18
2.5
19
75
10
51
15
36
2
45
1.58
184087--184134
23
2.1
23
100
0
96
35
25
12
27
1.92
197461--197505
21
2.1
22
83
4
56
13
15
0
71
1.15
205091--205133
3
14.3
3
95
0
68
4
30
0
65
1.13
225351--225414
24
2.7
24
90
0
101
31
26
17
25
1.97
234839--234909
25
2.8
25
76
18
74
63
9
12
14
1.52
248137--248182
24
1.9
23
86
8
65
56
6
4
32
1.45
249199--249413
69
3.1
69
90
0
322
42
22
18
16
1.88
249176--249401
23
9.8
23
80
3
258
43
23
17
15
1.87

Tables:   1

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