genome.fa.s15140.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015140.1 Kokia drynarioides strain JFW-HI SEQ_130184, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  233467

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8756--8798	16	2.7	16	75	13	52	37	6	6	48	1.57
17394--17443	24	2.0	26	88	11	77	30	4	0	66	1.10
17393--17449	24	2.3	25	83	16	75	33	3	0	63	1.12
19184--19263	31	2.6	31	84	4	99	42	8	16	32	1.79
26494--26525	16	2.0	17	88	11	50	28	0	6	65	1.16
39103--39578	237	2.0	236	89	3	726	35	13	21	29	1.91
43217--43241	1	25.0	1	100	0	50	0	0	0	100	0.00
54422--54475	22	2.5	22	87	3	74	62	9	5	22	1.45
55506--55542	18	2.1	18	94	0	65	24	8	5	62	1.44
55501--55544	23	1.9	23	90	9	72	22	9	6	61	1.50
72559--72615	5	11.6	5	75	17	57	78	1	15	3	0.96
72585--72615	9	3.3	9	95	4	53	80	0	19	0	0.71
72559--72611	26	2.1	25	86	10	72	79	1	15	3	0.96
72689--72722	17	1.9	17	88	5	50	44	14	11	29	1.81
74474--74526	24	2.2	25	75	18	60	33	3	3	58	1.34
77528--77596	9	7.3	9	73	15	59	65	1	2	30	1.16
77547--77618	37	1.9	37	83	5	92	62	1	2	33	1.18
77672--77723	15	3.4	15	70	15	52	30	11	3	53	1.54
77668--77738	31	2.3	31	100	0	142	32	12	7	47	1.68
77687--77738	16	3.3	16	69	15	54	34	11	7	46	1.69
83071--83103	14	2.4	14	94	0	57	18	0	12	69	1.18
90069--90108	20	2.0	20	90	0	62	47	7	7	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100972--101031	22	2.7	23	74	10	61	50	1	0	48	1.11
100996--101053	30	1.9	30	82	6	73	55	1	1	41	1.20
109698--109743	23	2.0	24	86	4	67	50	2	6	41	1.40
118427--118466	20	2.1	19	90	4	62	47	0	0	52	1.00
119970--120036	30	2.2	31	89	7	102	37	10	7	44	1.67
123552--123588	20	1.9	20	88	5	58	54	16	0	29	1.43
124754--124802	24	2.0	26	84	15	68	34	20	0	44	1.52
126512--126536	9	2.8	9	100	0	50	44	12	0	44	1.41
133776--133835	29	2.1	29	87	9	88	50	1	10	38	1.46
134493--134534	21	2.0	22	85	4	59	47	2	45	4	1.36
134952--135582	210	3.0	210	97	0	1190	35	12	32	19	1.89
149964--149991	6	4.7	6	100	0	56	0	32	17	50	1.47
157638--157674	19	1.9	19	88	0	56	35	13	2	48	1.57
160538--160593	16	3.5	16	85	4	78	37	5	26	30	1.79
160736--160900	58	2.8	56	78	10	172	50	1	1	46	1.22
176348--176386	19	2.1	19	90	0	60	71	2	2	23	1.10
178182--178206	12	2.1	12	100	0	50	52	0	0	48	1.00
178581--178621	15	2.5	17	80	11	59	65	0	0	34	0.93
178811--178856	25	1.9	25	86	8	69	36	4	0	58	1.18
181478--181540	29	2.1	32	82	8	78	42	1	3	52	1.27
185601--185824	112	2.0	112	100	0	448	32	8	23	36	1.84
212683--212729	14	3.3	14	77	16	51	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213172--213256	31	2.8	30	78	5	82	42	9	9	38	1.70
214127--214169	20	2.2	20	86	0	59	39	2	18	39	1.64
214597--214659	29	2.2	28	80	8	74	31	4	3	60	1.33
214538--214668	9	14.3	9	67	21	51	37	2	1	58	1.20
214729--214772	19	2.5	17	77	22	54	36	4	0	59	1.18
214734--214770	19	1.9	19	89	10	58	40	5	0	54	1.24
216639--216663	3	8.3	3	100	0	50	68	0	0	32	0.90
216968--217018	16	3.4	15	78	7	59	45	1	1	50	1.24
231779--231808	16	1.9	15	93	6	51	50	0	50	0	1.00
232155--232199	21	2.2	21	92	4	74	28	0	11	60	1.31
232457--232567	30	3.8	28	69	13	89	54	5	0	38	1.29
232483--232565	16	5.5	16	67	16	52	54	6	1	38	1.33
232459--232591	59	2.3	59	89	2	205	51	9	0	38	1.39

Tables:   1

The End!