genome.fa.s15143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015143.1 Kokia drynarioides strain JFW-HI SEQ_130187, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168324

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2409--2491	29	2.9	28	70	10	69	55	3	3	37	1.35
3244--3272	12	2.3	13	94	5	51	34	13	0	51	1.42
20551--20653	40	2.7	40	85	7	124	36	0	1	60	1.15
20632--20675	22	2.0	22	86	0	61	31	2	0	65	1.05
27677--27723	24	2.0	22	84	8	58	48	2	2	46	1.25
40342--40498	74	2.1	76	93	2	273	43	3	1	50	1.28
40344--40460	37	3.2	37	68	18	107	43	4	0	51	1.27
41887--41920	17	2.0	17	100	0	68	35	17	11	35	1.87
44122--44147	3	8.7	3	100	0	52	30	0	0	69	0.89
44418--44443	2	13.0	2	100	0	52	50	0	0	50	1.00
45794--45875	37	2.2	37	88	0	119	30	34	8	26	1.86
51957--52156	97	2.0	98	81	9	230	38	12	18	30	1.88
52424--52547	31	4.1	32	74	18	86	36	8	25	29	1.85
52422--52882	29	15.7	28	68	17	181	34	4	23	37	1.77
52422--52882	58	7.8	59	78	5	398	34	4	23	37	1.77
52584--52735	30	5.2	28	72	12	119	30	4	23	41	1.75
52422--52882	117	3.9	118	79	4	450	34	4	23	37	1.77
52422--52900	59	8.1	57	74	8	232	34	5	23	36	1.78
54673--54718	17	2.8	16	87	9	65	50	2	2	45	1.26
54673--54740	6	11.2	6	75	19	61	52	1	2	42	1.25
54687--54749	17	3.4	18	85	14	92	53	0	4	41	1.22
55240--56011	49	15.8	50	74	9	603	16	24	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55319--55944	98	6.4	98	89	1	785	15	24	20	38	1.92
55273--56011	98	7.6	98	86	3	683	16	24	20	38	1.92
56431--56465	18	1.9	18	88	0	52	60	11	8	20	1.57
65287--65337	25	2.0	25	100	0	102	31	13	23	31	1.93
65640--65777	70	2.0	70	100	0	276	18	30	15	35	1.92
67245--67438	97	2.0	97	81	4	230	38	12	18	30	1.88
67702--68152	59	7.7	58	77	10	339	33	4	23	38	1.75
67697--68163	117	4.0	118	79	7	470	32	4	23	38	1.75
67883--68163	30	9.6	29	72	15	168	33	3	23	40	1.71
68030--68193	88	1.9	87	81	7	197	33	3	24	38	1.73
67702--68193	118	4.2	115	77	11	405	33	4	23	38	1.76
69256--69298	17	2.6	15	80	20	50	39	0	0	60	0.97
69791--69826	11	3.2	11	88	4	54	11	2	33	52	1.51
69962--70004	18	2.4	17	80	7	50	53	4	2	39	1.34
76047--76139	3	30.3	3	91	4	141	62	1	3	33	1.18
77265--77421	29	5.5	28	70	17	99	31	22	6	40	1.79
77298--77804	57	8.8	57	78	10	414	30	25	5	38	1.79
77294--77631	28	11.8	28	69	17	144	30	25	4	39	1.75
77290--77748	115	4.0	115	82	9	463	30	25	4	39	1.76
77735--77807	28	2.6	28	93	0	128	30	26	10	32	1.90
77735--77823	28	3.2	28	82	9	110	32	25	8	32	1.87
80719--80743	13	1.9	13	100	0	50	40	24	20	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85463--85502	19	2.1	19	100	0	80	27	10	32	30	1.89
89601--90070	49	9.6	50	70	13	298	37	18	25	17	1.93
89586--90093	98	5.2	98	88	1	689	38	19	25	17	1.92
90498--90929	29	14.8	29	66	17	157	30	24	5	40	1.77
90520--90929	57	7.1	58	82	6	397	30	23	5	40	1.77
91421--91799	117	3.2	118	79	11	315	38	4	25	31	1.76
91399--91815	59	7.1	58	78	12	322	38	4	24	32	1.75
91483--91985	29	17.3	27	68	19	136	39	2	24	32	1.70
91547--91988	29	15.2	28	71	15	260	40	2	24	32	1.69
91775--92001	57	3.9	57	81	7	271	42	2	22	32	1.66
94684--94716	10	3.3	10	88	12	50	78	0	3	18	0.87
95150--95208	11	5.1	11	80	10	64	47	1	11	38	1.50
112943--112967	13	1.9	13	100	0	50	92	0	0	8	0.40
119825--119858	15	2.2	16	89	5	52	67	0	0	32	0.91
130096--130218	23	5.5	21	81	8	104	11	23	21	43	1.84
130117--130215	45	2.2	44	89	5	146	11	22	23	43	1.85
137499--137578	29	2.6	31	83	13	105	51	1	1	46	1.17
138121--138145	10	2.5	10	100	0	50	44	0	0	56	0.99
151122--151162	22	1.9	21	85	5	55	34	0	14	51	1.43
151106--151163	28	2.1	28	87	6	82	34	0	15	50	1.45
151270--151310	6	6.8	6	83	10	57	65	14	2	17	1.37
153683--153730	16	3.1	16	72	22	57	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153682--153747	30	2.2	30	86	2	89	46	3	1	48	1.26
156876--156932	20	2.8	20	81	7	62	38	1	8	50	1.44
167365--167440	39	2.0	36	82	12	91	46	0	2	51	1.15
167668--167713	24	2.0	23	86	4	65	45	0	2	52	1.13

Tables:   1

The End!