genome.fa.s15145.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015145.1 Kokia drynarioides strain JFW-HI SEQ_130189, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  283638

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1651--1695	21	2.1	22	83	4	56	26	6	0	66	1.16
12045--12092	25	1.9	25	100	0	96	45	22	4	27	1.70
12830--12854	6	4.2	6	100	0	50	68	32	0	0	0.90
14274--14312	17	2.2	18	86	4	53	30	5	2	61	1.31
25270--25315	23	2.0	23	86	0	65	32	4	17	45	1.68
27329--27376	20	2.4	20	82	6	62	45	37	0	16	1.48
29333--29375	21	2.1	21	91	8	72	11	4	4	79	1.04
37836--37863	2	14.0	2	100	0	56	50	0	50	0	1.00
40121--40210	35	2.6	34	85	7	110	40	0	4	55	1.20
40121--40210	17	5.2	17	82	8	110	40	0	4	55	1.20
40156--40210	6	9.5	6	76	7	60	40	0	3	56	1.17
40156--40244	17	5.5	17	72	17	55	42	1	4	51	1.29
40943--41003	3	20.3	3	75	6	52	55	3	1	39	1.26
40946--40988	22	2.0	21	90	4	68	55	0	0	44	0.99
42068--42350	30	9.6	29	82	5	318	36	30	2	31	1.70
42068--42350	59	4.8	59	83	5	342	36	30	2	31	1.70
54571--54621	5	10.0	5	83	12	68	21	1	0	76	0.88
55031--55317	49	5.8	49	76	4	281	16	26	18	39	1.91
55067--55317	99	2.5	98	88	2	369	16	26	17	39	1.91
55741--55775	18	1.9	18	94	0	61	54	11	14	20	1.70
72658--72693	18	2.0	18	88	0	54	25	27	19	27	1.99
77414--77450	16	2.4	16	90	4	58	35	5	0	59	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78283--78322	20	2.0	20	90	0	62	47	7	22	22	1.76
78838--78935	49	2.0	49	100	0	196	46	10	12	30	1.74
78846--78923	24	3.2	24	62	16	61	46	10	14	29	1.77
79707--79779	27	2.8	27	80	10	71	61	1	1	35	1.13
97971--98274	30	10.2	30	76	7	192	37	23	2	37	1.67
98017--98132	59	2.0	58	81	8	137	35	20	1	42	1.63
97971--98250	89	3.1	89	77	6	228	37	23	1	37	1.66
99540--99611	32	2.3	30	77	13	74	52	20	8	18	1.70
103086--103130	21	2.1	21	100	0	90	37	15	4	42	1.67
107891--107944	26	2.1	26	100	0	108	38	18	18	24	1.93
113617--113654	7	5.4	7	93	0	58	52	2	2	42	1.29
123240--123281	21	2.0	22	90	4	68	42	16	16	23	1.88
123483--123529	24	2.0	24	82	0	58	31	14	2	51	1.55
124274--124310	16	2.3	16	90	0	56	2	21	0	75	0.92
124467--124529	24	2.6	24	84	0	81	26	14	7	50	1.70
126282--126344	24	2.6	24	82	0	81	26	11	7	53	1.63
128692--128754	19	3.4	19	72	14	60	49	0	0	50	1.00
131546--131581	14	2.6	14	87	12	56	61	0	0	38	0.96
133988--134012	11	2.3	11	100	0	50	24	0	0	76	0.80
141906--141948	17	2.5	17	85	11	61	74	0	2	23	0.93
151484--151552	19	3.7	19	74	14	72	31	1	4	62	1.24
151473--151568	37	2.5	37	83	6	122	31	1	7	60	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151451--151579	37	3.6	34	74	20	113	32	0	6	59	1.29
151591--151664	8	9.0	8	71	20	55	27	1	2	68	1.10
151596--151636	15	2.7	15	79	20	50	31	0	2	65	1.05
151631--151664	17	2.0	17	88	0	50	20	2	2	73	1.09
156568--156621	27	2.0	27	85	0	72	29	20	5	44	1.74
159597--159638	21	1.9	23	85	9	61	50	11	7	30	1.66
177798--177845	24	1.9	26	84	16	66	43	0	25	31	1.55
177908--177963	25	2.4	23	91	8	87	8	25	25	41	1.84
177917--177974	25	2.3	26	93	3	100	12	31	22	34	1.91
177917--177988	25	2.8	26	87	4	67	12	29	20	37	1.90
179502--179577	21	3.6	21	80	0	98	34	27	13	25	1.93
183153--183178	7	3.7	7	100	0	52	76	0	0	23	0.78
184239--184281	22	2.0	22	90	0	68	20	6	11	60	1.54
186810--186869	27	2.2	27	82	5	68	53	1	3	41	1.27
187790--187823	14	2.4	14	95	0	59	70	5	0	23	1.09
188869--188896	13	2.2	13	100	0	56	42	21	21	14	1.88
198625--198696	31	2.4	30	72	6	74	30	11	18	40	1.85
204021--204045	2	12.5	2	100	0	50	48	0	0	52	1.00
204193--204239	26	1.9	24	83	12	60	19	6	12	61	1.52
204419--204487	22	3.2	22	66	22	56	43	4	7	44	1.51
204698--204734	19	1.9	19	94	0	65	35	2	0	62	1.10
207472--207533	28	2.2	28	100	0	124	40	3	9	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209018--209051	2	17.0	2	87	0	50	47	2	2	47	1.32
216481--216566	39	2.2	38	82	13	106	55	0	4	39	1.20
216632--216695	12	5.6	11	76	12	58	42	3	0	54	1.16
216632--216691	17	3.5	17	80	8	77	41	3	0	55	1.16
217359--217436	3	26.0	3	90	0	102	58	0	5	35	1.20
218482--218639	29	5.5	29	73	15	139	31	21	3	43	1.68
218482--218919	58	7.6	58	77	10	325	31	24	4	38	1.75
218652--218801	29	5.2	29	71	13	130	38	27	2	32	1.68
218482--218919	115	3.8	114	78	9	376	31	24	4	38	1.75
218482--218846	59	6.3	57	78	9	316	32	24	3	39	1.71
219661--219690	15	2.0	15	100	0	60	20	6	20	53	1.67
224305--224345	18	2.2	19	86	4	57	56	2	0	41	1.13
224936--224996	29	2.1	29	90	6	97	3	49	4	42	1.40
236360--236423	31	2.1	31	100	0	128	39	26	12	21	1.89
240312--240415	45	2.3	45	93	0	181	41	18	18	22	1.90
242849--242894	15	3.0	16	71	12	51	13	10	60	15	1.58
253235--253275	15	2.8	15	88	3	66	39	0	0	60	0.96
253605--253645	21	1.9	22	85	14	59	51	2	0	46	1.14
260368--260410	11	3.8	11	80	17	52	32	2	0	65	1.06
268128--268517	130	3.0	130	98	0	753	29	16	19	34	1.94

Tables:   1

The End!