genome.fa.s15146.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015146.1 Kokia drynarioides strain JFW-HI SEQ_130190, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  339245

Tables:   1   

This is table  1  of  1  ( 114 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3924--3965	21	2.0	21	90	0	66	52	14	7	26	1.67
3965--4008	21	2.0	22	83	12	56	59	25	0	15	1.37
5026--5087	11	5.5	11	73	17	56	22	1	4	70	1.14
5373--5414	18	2.4	18	84	4	50	23	2	4	69	1.20
6181--6267	45	1.9	45	95	0	156	21	10	11	56	1.64
19882--19923	20	2.1	20	100	0	84	45	21	9	23	1.81
21085--21112	14	2.0	14	100	0	56	35	14	7	42	1.73
24392--24449	17	3.4	17	85	0	71	50	12	15	22	1.77
24392--24457	34	1.9	34	85	11	91	48	12	18	21	1.80
24392--24457	17	3.9	17	81	0	69	48	12	18	21	1.80
31570--31615	23	2.0	23	91	4	76	23	8	13	54	1.66
36988--37033	8	5.9	8	89	5	76	89	0	10	0	0.50
36991--37046	23	2.5	23	94	2	96	85	0	12	1	0.67
37353--37397	20	2.2	20	84	7	56	24	13	11	51	1.73
37979--38505	100	5.3	100	88	2	738	36	20	19	23	1.95
37979--38505	199	2.6	200	87	3	747	36	20	19	23	1.95
39024--39065	21	2.0	21	85	0	57	52	14	4	28	1.62
40129--40171	5	8.4	5	82	5	50	20	2	4	72	1.14
40129--40168	16	2.6	16	88	4	55	22	2	5	70	1.19
40160--40223	30	2.1	30	83	11	78	18	10	7	62	1.51
40328--40380	23	2.3	24	80	9	65	18	3	5	71	1.21
49757--49796	19	2.1	19	86	9	55	15	12	10	62	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50393--50431	10	4.0	10	83	16	55	79	0	20	0	0.73
53609--53635	12	2.2	12	100	0	54	77	0	14	7	0.97
53972--53998	14	1.9	14	100	0	54	44	3	0	51	1.19
55240--55821	23	25.3	23	84	1	711	46	12	6	34	1.67
59260--59290	2	15.5	2	100	0	62	51	0	0	48	1.00
62312--62347	15	2.4	15	95	0	63	30	41	2	25	1.69
62378--62411	13	2.6	13	90	0	50	58	11	2	26	1.47
70976--71009	5	6.6	5	86	6	50	20	2	0	76	0.92
70976--71012	16	2.3	16	90	9	58	21	2	0	75	0.92
74143--74188	23	2.0	23	100	0	92	47	8	4	39	1.54
74177--74503	163	2.0	163	98	0	636	41	11	16	30	1.84
82468--82507	20	2.0	21	90	5	64	12	0	10	77	0.99
82761--82931	50	3.4	50	80	0	180	23	21	16	38	1.93
82916--83696	46	17.0	46	78	6	662	24	14	25	34	1.94
82838--83696	92	9.3	92	80	4	775	25	14	25	34	1.94
82916--83696	138	5.7	137	83	3	854	24	14	25	34	1.94
83700--84096	99	4.0	98	73	6	271	26	19	18	35	1.95
92356--92413	26	2.2	26	80	20	68	62	5	1	31	1.27
106110--106148	18	2.2	18	86	9	53	0	23	5	71	1.05
120888--120917	3	10.0	3	100	0	60	66	0	0	33	0.92
120916--120955	3	13.3	3	100	0	80	67	0	32	0	0.91
124114--124172	21	2.8	22	77	10	70	28	11	23	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126777--126943	72	2.3	72	82	2	192	28	29	17	23	1.97
129317--129482	36	4.6	36	83	3	174	31	23	16	28	1.96
129317--129482	71	2.3	72	82	4	192	31	23	16	28	1.96
138592--138657	32	2.1	32	88	0	96	27	15	12	45	1.81
142540--142587	16	2.9	17	81	6	62	81	4	8	6	0.98
142560--142620	8	7.5	8	78	10	52	80	0	14	4	0.87
142554--142603	23	2.2	23	85	7	66	84	2	10	4	0.84
142550--142626	31	2.5	28	82	14	82	80	2	11	5	0.97
143628--144386	49	15.5	49	75	8	531	34	16	30	18	1.93
143628--144245	196	3.1	194	83	4	758	34	16	31	17	1.93
144688--145456	39	19.8	39	79	4	635	27	30	16	26	1.97
145852--145951	46	2.2	46	88	0	146	33	19	24	24	1.97
145963--146084	46	2.7	46	90	0	181	34	18	24	22	1.96
145841--146062	111	2.0	111	99	0	435	35	19	21	24	1.96
156384--156529	74	2.0	74	90	2	231	31	13	8	46	1.73
168594--168803	94	2.2	94	93	0	366	37	21	9	31	1.85
168594--168835	94	2.6	93	86	5	274	38	21	9	30	1.84
175696--175733	19	2.0	19	85	10	51	23	7	13	55	1.64
175839--175963	48	2.6	48	89	0	187	25	8	12	53	1.66
176387--176545	80	2.0	78	90	2	246	37	17	15	28	1.91
176507--176656	80	1.9	80	100	0	300	34	24	14	26	1.94
180477--180505	13	2.1	14	93	6	51	6	13	6	72	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192209--192536	53	6.3	53	87	4	479	28	14	21	35	1.93
192209--192536	104	3.1	104	89	4	491	28	14	21	35	1.93
192209--192534	157	2.1	157	91	0	535	28	14	21	35	1.93
200972--201030	24	2.5	24	94	5	102	30	27	22	20	1.98
202165--202204	22	1.9	19	85	14	53	47	10	0	42	1.37
204937--205042	24	4.5	24	90	1	169	28	24	23	23	2.00
206841--206897	22	2.6	22	88	0	87	40	15	14	29	1.87
218753--218797	24	1.9	24	86	13	67	8	40	6	44	1.62
237433--237739	151	2.0	154	87	3	442	26	14	15	42	1.87
240120--240149	10	3.0	10	100	0	60	60	0	0	40	0.97
248691--248776	44	2.0	44	97	0	163	32	6	6	53	1.55
249249--249306	28	2.1	28	83	0	71	25	25	17	31	1.97
255553--255586	16	2.1	16	88	0	50	55	0	0	44	0.99
258276--258321	20	2.3	21	82	17	62	45	0	0	54	0.99
258724--258762	14	2.8	14	84	0	51	41	2	12	43	1.56
258902--258941	20	1.9	21	90	10	64	37	2	2	57	1.26
263922--263965	22	2.0	23	86	4	63	20	11	31	36	1.88
264610--264769	29	5.5	29	83	3	196	20	10	25	44	1.83
264610--264769	87	1.8	87	86	2	232	20	10	25	44	1.83
267292--267392	30	3.4	29	79	15	116	40	23	15	19	1.90
267276--267392	60	2.0	60	86	3	164	42	23	15	17	1.88
267788--267926	30	4.6	30	90	0	206	43	25	16	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271962--272019	17	3.4	17	80	2	62	46	12	20	20	1.82
271975--272044	34	2.1	34	86	0	95	47	8	22	21	1.78
272067--272099	12	2.6	13	85	4	50	69	12	3	15	1.30
289009--289055	24	2.0	24	84	12	62	51	10	12	25	1.72
290781--290837	26	2.1	28	84	12	75	68	5	17	8	1.35
290810--290852	19	2.4	18	81	11	52	62	4	20	11	1.46
291425--291464	19	2.2	18	86	4	53	7	15	2	75	1.14
292223--292280	24	2.6	22	84	13	66	39	29	8	22	1.84
300665--300718	24	2.3	22	81	12	63	55	7	11	25	1.61
302285--302317	12	2.8	12	86	13	50	3	18	0	78	0.87
303343--303436	3	31.7	3	80	10	104	1	29	0	69	0.96
322151--322180	8	3.9	8	91	8	53	33	0	26	40	1.57
322151--322180	15	2.0	15	100	0	60	33	0	26	40	1.57
332380--332411	15	2.1	16	94	5	57	25	0	0	75	0.81
332572--332642	22	3.2	21	73	16	54	43	7	4	45	1.50
333582--333747	84	2.0	84	81	8	196	40	10	11	36	1.76
335272--335524	123	2.1	123	98	0	488	23	26	19	29	1.98
337486--337547	27	2.2	27	85	5	79	22	8	33	35	1.84
337585--337811	59	3.9	59	88	2	334	33	6	29	31	1.82
337527--337814	118	2.4	117	84	5	366	33	5	28	32	1.79
337643--338016	205	1.8	206	88	2	574	34	5	27	32	1.80
337649--337957	146	2.1	149	84	5	405	34	5	26	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337798--338189	59	6.8	58	80	8	333	33	5	28	32	1.81
337798--338189	118	3.4	114	81	8	402	33	5	28	32	1.81
337561--338248	264	2.6	264	91	4	1056	33	5	28	32	1.81
337499--338250	29	25.8	28	68	17	326	32	5	28	32	1.81

Tables:   1

The End!