Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015147.1 Kokia drynarioides strain JFW-HI SEQ_130191, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120260

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49--84
3
12.0
3
100
0
72
66
0
0
33
0.92
1206--1484
59
4.7
59
76
5
253
33
27
4
34
1.78
1206--1484
29
9.5
29
75
8
224
33
27
4
34
1.78
10626--10650
2
12.5
2
100
0
50
52
0
0
48
1.00
13064--13127
31
2.0
30
82
8
74
29
1
14
54
1.49
27939--27982
14
3.1
14
78
12
54
29
2
2
65
1.16
28248--28340
42
2.1
44
94
5
163
60
15
0
24
1.35
28267--28356
45
2.0
44
82
6
110
63
11
2
23
1.38
28328--28402
38
2.0
38
89
0
114
60
10
5
24
1.51
39559--39614
20
2.8
20
73
13
51
55
0
3
41
1.17
50640--50930
154
1.9
154
91
0
483
45
10
17
26
1.81
51567--51624
29
2.0
29
83
3
73
46
6
15
31
1.72
54007--54035
8
3.8
8
90
9
51
0
10
0
89
0.48
60544--60640
47
2.1
47
98
0
185
29
23
20
25
1.99
68063--68094
16
2.0
16
93
0
55
21
6
40
31
1.78
68492--68664
88
1.9
89
85
6
235
38
20
7
34
1.81
68753--68832
28
2.9
28
67
12
65
61
2
1
35
1.18
68816--68872
19
2.9
20
75
15
64
71
1
3
22
1.10
68814--68870
9
6.0
9
73
18
53
73
1
1
22
1.02
68836--68980
57
2.6
56
81
9
152
62
2
4
29
1.30
68892--68980
27
3.2
27
76
12
99
62
2
5
29
1.30
68836--68980
28
5.1
28
73
12
109
62
2
4
29
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68836--68989
56
2.7
57
83
6
190
61
2
5
30
1.31
69022--69051
12
2.5
12
94
0
51
26
0
0
73
0.84
69289--69336
25
1.9
25
82
0
60
33
4
0
62
1.14
69354--69511
81
1.9
82
82
6
196
42
3
9
44
1.55
69784--69808
6
4.2
6
100
0
50
0
68
0
32
0.90
82322--82361
12
3.5
11
86
3
53
70
22
0
7
1.12
82322--82375
23
2.3
23
84
9
65
72
22
0
5
1.05
82365--82466
12
9.0
12
67
12
63
67
21
7
2
1.30
82336--82483
21
6.8
21
68
17
63
68
21
6
3
1.26
82321--82384
20
3.2
19
77
18
51
71
21
1
4
1.12
82399--82485
21
4.2
20
85
5
102
67
22
6
2
1.26
84574--84630
20
2.8
20
86
0
69
52
8
7
31
1.59
86112--86189
6
13.5
6
70
17
58
44
1
2
51
1.23
86112--86158
23
2.0
23
88
8
69
42
0
4
53
1.20
86115--86170
11
4.9
11
80
10
60
37
1
3
57
1.27
86079--86189
17
6.4
17
79
8
116
42
0
3
53
1.24
86188--86235
15
2.9
17
78
15
64
50
18
6
25
1.70
88075--88322
29
8.5
29
72
14
172
36
25
4
33
1.76
88067--88254
59
3.2
59
79
13
221
37
24
4
33
1.75
95888--96277
193
2.0
193
94
0
690
38
16
20
23
1.92
99926--100093
49
3.5
48
79
7
148
42
20
23
13
1.87
99968--100088
49
2.4
50
86
5
165
44
19
22
13
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99968--100139
50
3.5
50
79
7
174
43
19
23
13
1.87
100239--100892
194
3.4
190
82
6
710
36
18
22
22
1.95
101193--101302
17
6.3
18
79
9
113
42
0
3
52
1.25
101228--101283
11
4.9
11
76
10
51
39
1
3
55
1.28
101193--101302
35
3.2
34
83
5
132
42
0
3
52
1.25
101221--101271
23
2.2
24
86
10
70
43
0
3
52
1.19
101193--101304
52
2.2
52
86
0
152
42
0
3
52
1.24
101981--102036
9
6.3
9
80
12
71
55
3
1
39
1.28
103884--104325
29
15.0
30
81
7
431
35
28
3
32
1.73
103852--104325
59
8.0
58
79
10
419
35
28
3
32
1.73
115646--115682
19
2.1
18
85
14
51
40
5
2
51
1.39
116384--116430
6
8.0
6
79
13
53
53
2
2
42
1.25
116384--116438
17
3.2
17
84
2
74
52
3
1
41
1.29
116766--117196
201
2.2
200
90
2
668
21
22
19
36
1.95
117685--117745
28
2.2
28
85
2
79
52
4
19
22
1.65
119085--119148
32
2.0
32
96
0
119
23
31
17
28
1.97

Tables:   1

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