genome.fa.s15149.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015149.1 Kokia drynarioides strain JFW-HI SEQ_130193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  348839

Tables:   1   2   

This is table  1  of  2  ( 123 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326--396	17	4.2	17	79	0	70	39	5	2	52	1.40
1288--1327	5	7.8	5	88	5	62	17	2	0	80	0.83
9270--9523	125	2.0	125	99	0	499	28	7	22	41	1.80
23943--24007	32	2.0	32	100	0	130	47	21	3	27	1.65
24778--24830	21	2.5	21	75	0	52	45	5	7	41	1.56
32090--32140	12	4.3	12	87	2	68	35	27	19	17	1.94
33785--33835	24	2.1	25	81	3	59	45	5	9	39	1.62
36502--36533	16	2.0	16	93	0	55	43	3	0	53	1.16
38788--38825	13	2.9	13	77	14	51	42	0	15	42	1.47
47202--47407	84	2.5	82	79	10	206	17	8	52	21	1.71
47285--47448	84	2.0	82	82	9	197	17	8	52	21	1.71
47513--47643	51	2.8	45	70	16	120	15	12	51	20	1.75
47513--47685	90	1.9	93	87	7	262	16	12	50	21	1.77
53485--53552	28	2.4	29	79	13	70	39	11	1	47	1.49
55213--55429	66	3.2	66	70	8	186	16	8	52	23	1.70
55127--55437	135	2.3	135	91	0	514	16	7	52	24	1.69
55663--55733	30	2.4	30	85	4	90	18	8	52	21	1.71
55772--55814	12	3.6	12	77	0	50	4	6	60	27	1.43
55772--55833	24	2.6	24	84	0	70	9	8	54	27	1.61
56911--56941	16	1.9	16	93	0	53	54	12	6	25	1.62
62054--62086	17	2.0	17	88	5	50	78	3	3	15	0.99
64913--64949	6	6.5	6	81	12	51	51	18	0	29	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64908--64947	10	4.0	10	83	0	53	50	17	0	32	1.47
65131--65161	6	5.2	6	100	0	62	51	32	0	16	1.44
67281--67324	20	2.1	22	87	8	65	29	6	11	52	1.63
67391--67590	68	3.0	66	78	10	221	24	10	19	46	1.81
67567--67634	6	11.3	6	96	0	127	32	0	17	50	1.47
74162--74220	31	1.9	31	89	0	91	45	10	10	33	1.72
75313--75344	6	5.5	6	96	3	57	87	12	0	0	0.54
77063--77234	83	2.1	83	91	1	272	29	18	15	37	1.91
80403--80446	2	22.0	2	100	0	88	50	0	0	50	1.00
83220--83272	21	2.5	22	84	3	72	32	0	18	49	1.48
88105--88231	51	2.4	52	81	6	150	36	19	12	31	1.89
88628--88678	20	2.5	20	100	0	102	11	41	0	47	1.40
88816--88854	17	2.2	18	86	4	53	84	0	7	7	0.77
90178--90276	51	1.9	51	97	0	189	31	16	8	44	1.76
90185--90288	51	2.0	51	94	0	181	32	16	9	41	1.81
93522--93623	54	1.9	54	86	5	147	34	22	14	28	1.94
99300--99335	17	2.1	17	100	0	72	30	5	16	47	1.70
110785--110827	21	2.0	22	82	13	54	51	2	0	46	1.13
110797--110847	24	2.2	23	82	10	59	49	1	0	49	1.12
117977--118174	102	2.0	100	88	4	299	41	7	7	43	1.60
117988--118183	100	1.9	101	86	4	261	44	6	6	42	1.55
125518--125559	9	5.0	8	81	18	50	23	2	2	71	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125521--125564	16	2.6	16	85	7	52	22	2	4	70	1.17
127345--127369	6	4.2	6	100	0	50	48	0	0	52	1.00
129057--129099	20	2.1	21	86	4	61	69	6	0	23	1.12
129038--129219	91	2.0	91	97	0	346	59	7	4	28	1.43
129148--129190	20	2.1	21	86	4	61	69	6	0	23	1.12
132285--132360	31	2.5	31	77	0	80	47	9	11	31	1.72
134362--134386	6	4.2	6	100	0	50	16	0	32	52	1.44
136895--137147	126	2.0	127	96	0	463	21	21	13	43	1.86
148314--148353	20	2.1	19	85	4	53	85	0	12	2	0.71
151565--151615	15	3.5	15	76	12	52	21	3	0	74	0.98
155626--155660	10	3.6	10	84	7	54	60	0	0	40	0.97
175138--175193	29	1.9	29	85	0	76	42	10	1	44	1.49
176101--176627	262	2.0	262	99	0	1036	34	17	12	34	1.88
180873--180907	16	2.2	16	89	0	52	65	0	0	34	0.93
183090--183132	21	2.0	21	100	0	86	37	4	9	48	1.56
189909--189963	4	13.8	4	100	0	110	50	23	0	25	1.49
191017--191051	2	17.5	2	93	0	61	2	0	45	51	1.16
197232--197273	21	2.0	22	90	4	68	47	2	0	50	1.14
197808--197845	20	1.9	20	88	0	58	60	0	0	39	0.97
198615--198644	12	2.5	12	100	0	60	26	6	23	43	1.78
205013--205055	17	2.5	16	82	14	50	55	0	20	23	1.43
209849--209924	38	2.0	38	97	0	143	31	11	21	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213019--213068	24	2.0	25	84	11	66	62	0	24	14	1.32
226827--226876	21	2.4	20	75	24	50	30	2	2	66	1.14
230842--230894	9	5.7	9	78	8	61	28	3	1	66	1.20
230842--230893	19	2.8	17	83	13	59	26	3	1	67	1.18
230899--230942	18	2.5	17	82	10	52	47	0	4	47	1.22
230904--230952	18	2.6	18	84	12	55	44	0	4	51	1.20
234049--234093	22	2.0	23	83	16	58	44	4	4	46	1.43
248427--248461	12	2.9	12	95	0	61	5	25	2	65	1.28
250078--250153	32	2.4	32	82	4	93	31	10	14	43	1.79
250576--250602	9	3.0	9	100	0	54	33	0	0	66	0.92
252117--252142	8	3.2	8	100	0	52	46	0	0	53	1.00
254787--255247	147	3.1	146	86	4	624	28	23	20	28	1.99
260624--260666	20	2.2	19	87	4	59	51	2	6	39	1.42
261396--261432	13	2.8	13	95	0	65	43	5	18	32	1.73
261899--261972	14	4.8	15	72	20	55	48	1	0	50	1.09
263858--263902	23	2.0	23	90	0	72	31	2	2	64	1.18
266414--266486	31	2.4	31	86	11	98	23	13	17	45	1.84
268855--268894	3	13.3	3	100	0	80	32	0	0	67	0.91
268995--269033	3	13.0	3	88	0	51	64	5	2	28	1.28
270188--270225	18	2.1	19	85	5	51	44	2	2	50	1.30
274234--274305	10	7.5	10	73	14	62	69	2	4	23	1.19
274488--274524	19	1.9	19	94	0	65	43	2	2	51	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279451--279508	29	1.9	31	86	6	84	39	15	5	39	1.70
279882--280056	93	1.9	96	84	6	241	30	5	18	46	1.70
281701--281745	17	2.6	18	82	7	56	28	0	4	66	1.11
281872--281907	18	1.9	19	88	5	56	61	2	11	25	1.43
295993--296773	270	2.9	260	84	8	930	28	14	18	37	1.91
298632--298659	14	2.0	14	100	0	56	28	28	7	35	1.84
300325--300384	31	1.9	31	86	6	86	26	6	21	45	1.77
302415--302458	23	2.0	23	86	4	63	27	2	13	56	1.49
307486--307768	154	1.8	155	88	3	435	30	13	15	40	1.85
308689--308713	12	2.1	12	100	0	50	76	0	0	24	0.80
309667--309700	10	3.4	10	95	0	59	32	0	0	67	0.91
309686--309748	27	2.4	26	84	5	74	42	0	1	55	1.09
311474--311556	31	2.8	30	80	7	80	33	8	4	53	1.53
311975--312005	16	1.9	16	100	0	62	61	0	0	38	0.96
314780--314862	36	2.3	36	100	0	166	49	7	2	40	1.43
315027--315051	13	1.9	13	100	0	50	48	4	0	48	1.20
315318--315356	14	2.7	15	88	8	62	41	0	0	58	0.98
320497--320527	15	2.0	16	93	6	55	80	6	0	12	0.89
321963--322565	143	4.3	143	78	10	566	36	18	16	27	1.93
322202--322457	130	2.0	130	84	4	338	36	17	16	29	1.92
328527--328607	29	2.7	29	75	5	81	55	8	2	33	1.44
330698--330730	3	11.0	3	100	0	66	33	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331744--332141	200	2.0	200	93	0	679	33	10	18	38	1.84
332443--332483	21	1.9	22	85	5	57	51	4	2	41	1.36
332970--333018	3	16.3	3	100	0	98	67	0	0	32	0.91
333017--333052	3	12.0	3	100	0	72	66	0	33	0	0.92
334063--334095	17	1.9	17	88	11	50	72	6	9	12	1.26
337776--337828	21	2.5	21	79	14	56	50	0	0	49	1.00
337791--337823	16	2.1	16	88	11	50	48	0	0	51	1.00
341490--341527	16	2.4	16	86	8	51	36	0	2	60	1.11
341899--341959	29	2.1	30	84	3	79	57	1	3	37	1.25
342349--342559	114	1.9	109	85	7	293	48	8	6	36	1.60

Tables:   1   2