genome.fa.s15151.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015151.1 Kokia drynarioides strain JFW-HI SEQ_130195, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  336145

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4576--4620	21	2.1	21	88	8	65	66	0	0	33	0.92
14730--14767	19	2.1	19	90	5	60	36	0	7	55	1.29
15020--15051	16	2.0	16	100	0	64	43	12	25	18	1.85
16826--16863	6	6.3	6	88	11	60	2	50	0	47	1.15
28678--28714	6	6.2	6	96	0	56	56	32	0	10	1.34
32002--32043	22	1.9	22	95	0	75	38	23	26	11	1.90
51333--51412	17	4.4	17	74	20	63	41	5	2	51	1.37
51321--51412	17	5.4	17	73	10	62	40	4	3	52	1.38
52120--52228	7	15.0	7	66	21	55	55	3	2	38	1.32
52120--52228	15	7.5	14	68	19	55	55	3	2	38	1.32
53116--53287	29	5.8	29	75	13	111	37	24	3	34	1.73
53176--53267	30	3.0	30	81	12	100	40	28	2	29	1.68
53358--53418	28	2.2	28	88	2	88	31	29	13	26	1.93
53625--53817	96	2.0	97	84	5	257	29	18	12	38	1.88
57368--57424	18	3.2	18	100	0	114	31	5	22	40	1.76
61971--62014	23	1.9	23	90	0	70	20	9	2	68	1.28
62082--62135	9	5.8	9	80	10	56	24	0	5	70	1.08
67239--67324	40	2.1	40	82	2	100	33	19	19	26	1.96
69291--69643	43	8.1	43	78	9	347	28	17	26	27	1.98
69291--69622	83	3.8	83	79	12	335	28	17	26	26	1.98
69431--69619	93	2.0	96	88	4	285	28	20	25	25	1.99
71910--71980	28	2.5	28	84	6	81	22	16	16	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71941--71999	28	2.1	28	84	6	75	20	15	22	42	1.89
83222--83267	25	1.9	25	86	8	69	32	4	6	56	1.45
99816--99882	22	3.3	22	64	23	65	52	13	11	22	1.73
99811--99888	38	2.1	38	100	0	156	51	12	15	20	1.76
103034--103070	3	12.3	3	100	0	74	0	64	0	35	0.94
110503--110577	24	3.1	24	94	0	132	53	8	12	26	1.65
121074--121134	21	2.8	22	80	14	65	68	0	0	31	0.89
121061--121128	20	3.3	21	78	11	61	67	0	0	32	0.91
122391--122437	18	2.6	18	96	0	85	48	6	4	40	1.48
123689--123731	16	2.6	16	81	3	50	69	6	2	20	1.23
133337--133362	6	4.3	6	100	0	52	50	0	34	15	1.45
135083--135121	21	1.9	20	89	5	60	33	5	0	61	1.18
142896--142949	21	2.6	21	76	5	56	44	29	1	24	1.64
143046--143113	14	4.9	14	70	20	52	20	5	35	38	1.77
144913--144979	22	3.0	21	78	10	62	50	0	0	49	1.00
152184--152230	24	2.0	23	84	15	62	36	6	2	55	1.37
155796--155831	18	2.0	18	88	0	54	55	2	0	41	1.14
160119--160168	18	2.9	17	75	3	55	6	18	4	72	1.22
161847--161885	10	3.5	11	86	10	53	82	0	2	15	0.79
166915--166959	21	2.1	21	87	4	63	8	8	6	75	1.19
169748--169781	17	2.0	17	88	0	50	35	0	5	58	1.22
174527--174566	15	2.7	16	81	14	50	60	2	12	25	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174630--174683	27	2.0	27	96	0	99	50	3	16	29	1.63
174819--174854	16	2.1	18	90	10	58	50	0	13	36	1.43
175806--175852	16	2.8	17	75	15	53	63	0	2	34	1.06
176678--176772	40	2.4	41	83	3	113	40	17	26	15	1.90
188148--188193	20	2.2	21	85	11	60	34	2	4	58	1.30
188997--189024	9	3.1	9	100	0	56	32	21	35	10	1.88
189934--189979	24	1.9	24	86	0	65	23	41	4	30	1.74
203464--203502	8	4.9	8	81	12	53	33	2	0	64	1.08
205348--205388	15	2.8	15	75	17	50	46	2	0	51	1.14
206935--206968	14	2.4	14	95	0	59	29	5	5	58	1.45
207821--207874	28	1.9	28	85	7	74	70	0	0	29	0.88
207821--207875	23	2.5	22	85	8	67	70	0	0	29	0.87
207816--207877	28	2.3	26	76	15	63	70	0	1	27	0.96
211408--211436	12	2.4	12	100	0	58	41	0	0	58	0.98
211561--211623	33	1.9	33	87	6	92	49	4	1	44	1.33
212289--212328	21	1.9	21	84	0	53	67	7	0	25	1.16
216295--216341	17	2.7	18	83	3	60	34	17	8	40	1.79
218261--218382	62	2.0	63	83	3	158	24	18	10	45	1.81
221929--221961	13	2.5	13	95	0	57	33	9	18	39	1.82
226036--226179	71	2.0	71	91	0	234	38	12	14	34	1.84
226686--227247	171	3.3	171	90	2	851	32	12	14	40	1.83
236182--236212	12	2.6	12	94	0	53	25	3	35	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253295--253336	21	2.0	22	85	4	59	38	23	7	30	1.82
262833--262872	16	2.3	18	87	8	57	50	10	5	35	1.58
264875--264965	14	6.6	14	77	7	69	40	19	15	24	1.90
265059--265090	16	2.0	16	93	0	55	18	0	28	53	1.45
271990--272075	7	12.4	7	74	6	50	34	22	25	17	1.95
271987--272048	20	3.4	20	68	25	64	38	20	25	14	1.91
271989--272070	34	2.4	34	87	0	119	36	21	24	17	1.94
272166--272197	16	2.0	16	93	0	55	18	0	28	53	1.45
273764--273956	37	5.2	37	79	4	194	36	30	16	16	1.91
278314--278358	21	2.1	21	84	8	56	31	13	20	35	1.91
285280--285329	25	2.0	25	100	0	100	48	12	16	24	1.79
290972--291012	20	2.0	20	85	4	55	46	21	2	29	1.64
290959--291012	21	2.6	22	80	8	60	42	24	3	29	1.72
292714--292762	20	2.5	19	80	9	55	38	6	0	55	1.25
316847--316925	31	2.7	29	78	9	81	62	2	0	35	1.09
322930--323078	78	1.9	76	82	5	183	42	14	14	28	1.84
330822--330908	4	21.2	4	74	9	68	67	0	32	0	0.91
330822--330878	21	2.7	21	86	0	69	71	0	28	0	0.86
330849--330902	7	7.9	7	73	19	51	61	0	38	0	0.96
330843--330908	15	4.6	15	75	22	70	62	0	37	0	0.96
330841--330908	21	3.3	21	91	4	113	63	0	36	0	0.95
334042--334083	21	2.0	21	86	9	59	23	16	35	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336081--336130	16	3.2	16	73	21	61	36	0	4	60	1.16

Tables:   1

The End!