genome.fa.s15155.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015155.1 Kokia drynarioides strain JFW-HI SEQ_130199, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127626

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4358--4400	21	2.1	21	91	4	70	60	13	0	25	1.34
13276--13498	27	8.3	26	81	4	203	38	12	23	25	1.89
13276--13498	54	4.1	54	80	4	254	38	12	23	25	1.89
13276--13498	81	2.8	80	79	6	243	38	12	23	25	1.89
15332--15379	24	1.9	26	84	16	66	45	0	22	31	1.53
15446--15489	23	1.9	23	82	17	56	15	25	25	34	1.95
16910--16983	34	2.3	30	79	11	85	13	13	4	68	1.34
16993--17027	14	2.5	14	90	0	52	22	5	8	62	1.45
17002--17029	14	2.0	14	100	0	56	21	0	7	71	1.09
17121--17190	29	2.3	30	87	4	97	34	8	14	42	1.76
20713--20746	16	2.1	16	88	0	50	50	8	2	38	1.49
26115--26160	22	2.1	22	100	0	92	65	4	4	26	1.30
27999--28038	18	2.2	19	91	8	66	65	5	7	22	1.38
38821--38888	33	2.1	34	83	10	88	29	5	5	58	1.45
51756--51862	53	2.0	53	100	0	214	24	18	11	45	1.82
54035--54075	19	2.2	20	86	8	59	14	7	2	75	1.12
59441--59479	20	2.0	20	94	0	69	64	0	7	28	1.21
64540--64627	42	2.1	42	93	0	149	39	2	34	23	1.68
71433--71496	32	1.9	34	81	12	80	51	14	3	31	1.57
81002--81113	59	1.9	59	85	7	156	25	9	9	55	1.63
81927--81964	20	2.0	20	89	5	60	23	0	5	71	1.07
82320--82503	60	3.1	61	77	12	149	52	12	11	23	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83645--83689	24	1.9	24	82	13	58	60	4	6	28	1.42
86502--86674	59	3.0	58	80	5	136	31	3	31	34	1.75
86517--86733	58	3.7	59	82	5	212	29	2	31	35	1.72
86545--86733	59	3.2	59	83	4	215	30	2	32	34	1.72
86584--86733	29	5.1	29	79	4	158	32	2	30	34	1.69
88594--88634	17	2.5	16	92	7	73	63	2	0	34	1.08
89236--89606	181	2.0	181	92	0	607	21	23	20	34	1.96
89417--89796	205	1.9	205	93	0	652	21	23	21	34	1.97
90293--90352	27	2.2	27	90	0	93	55	5	18	21	1.62
93955--95315	678	2.0	678	96	0	2515	31	17	18	32	1.94
102180--102401	30	7.6	28	68	17	107	32	3	28	34	1.75
102248--102402	30	5.3	28	73	10	132	31	3	28	36	1.73
102181--102402	59	3.8	58	78	8	211	32	3	29	34	1.75
102248--102402	29	5.3	29	74	9	143	31	3	28	36	1.73
104813--104852	2	20.0	2	100	0	80	50	0	0	50	1.00
114924--114991	26	2.8	24	75	6	64	61	0	1	36	1.05
117841--117892	27	2.0	24	82	10	59	42	3	7	46	1.51
119269--119310	19	2.2	19	86	0	57	28	11	4	54	1.57

Tables:   1

The End!