genome.fa.s15160.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015160.1 Kokia drynarioides strain JFW-HI SEQ_130204, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  450540

Tables:   1   

This is table  1  of  1  ( 117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9655--9711	27	2.0	30	86	10	84	57	3	5	33	1.38
10694--10719	1	26.0	1	100	0	52	100	0	0	0	0.00
22746--22779	16	2.1	17	88	5	52	58	11	14	14	1.63
22746--22779	17	2.1	16	88	5	50	58	11	14	14	1.63
26828--26859	14	2.1	16	88	11	50	59	0	0	40	0.97
26813--26859	16	3.1	15	82	8	51	51	0	0	48	1.00
26828--26860	15	2.1	16	88	5	50	60	0	0	39	0.97
29963--30071	57	1.9	56	88	1	164	37	12	19	30	1.89
32029--32334	152	2.0	151	90	3	479	32	12	16	37	1.87
42242--42280	19	2.1	19	85	9	53	43	17	0	38	1.50
45296--45364	28	2.5	28	78	7	68	36	0	5	57	1.22
48166--48282	58	2.0	58	96	0	216	26	16	23	33	1.96
54608--54685	35	2.2	35	100	0	156	46	16	20	16	1.85
54784--54838	6	9.2	6	95	0	101	1	14	34	49	1.54
63249--63289	21	2.0	21	90	0	64	21	2	48	26	1.63
63247--63287	14	2.9	14	85	0	55	21	2	48	26	1.63
66299--66352	24	2.2	24	83	6	65	37	1	3	57	1.27
73921--73987	26	2.5	26	81	13	73	65	4	4	25	1.30
73921--74021	25	3.8	26	78	15	84	65	3	3	26	1.28
73983--74034	20	2.6	20	72	6	52	71	1	1	25	1.07
80421--80445	4	6.2	4	100	0	50	52	0	0	48	1.00
82125--82184	18	3.4	18	76	2	68	33	23	21	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100336--100383	20	2.3	20	78	3	60	14	10	6	68	1.37
102012--102057	16	2.8	17	80	6	60	30	0	0	69	0.89
102002--102040	20	2.0	20	84	0	51	35	0	0	64	0.94
106719--107066	173	2.0	173	99	0	687	39	18	14	26	1.90
111510--111540	2	15.5	2	93	0	53	48	0	51	0	1.00
118699--118769	10	6.9	10	73	10	54	60	0	4	35	1.16
118735--118819	23	3.6	23	69	12	64	60	1	3	35	1.22
118777--118857	29	2.7	30	75	9	76	54	0	3	41	1.18
123388--123421	17	2.0	17	88	0	50	26	0	17	55	1.42
132676--132730	20	2.8	20	83	10	69	30	5	20	43	1.74
141026--141377	188	1.9	192	82	4	455	32	20	17	30	1.95
141022--141348	96	3.5	93	77	6	309	31	20	18	29	1.96
141495--141529	15	2.4	15	90	4	54	28	5	31	34	1.81
141959--142040	42	2.0	42	87	0	119	29	14	19	36	1.92
144701--144803	52	2.0	52	84	0	134	17	12	34	34	1.88
144706--144810	26	4.0	26	77	2	104	19	14	34	32	1.91
145864--145906	3	14.3	3	100	0	86	67	0	0	32	0.91
153945--154054	55	2.0	55	100	0	220	34	10	29	25	1.90
162290--162331	21	2.0	20	82	13	50	21	7	9	61	1.50
169137--169164	3	9.3	3	100	0	56	35	0	0	64	0.94
186844--186993	76	2.0	76	97	0	282	35	16	9	38	1.81
192130--192181	20	2.8	19	78	13	56	51	3	0	44	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193160--193227	17	3.8	18	74	14	61	27	2	5	63	1.32
193190--193227	18	2.2	17	86	9	51	26	2	5	65	1.27
198445--198476	12	2.6	12	95	5	55	0	0	12	87	0.54
199292--199317	12	2.2	12	100	0	52	23	0	7	69	1.14
211399--211425	12	2.2	12	100	0	54	22	0	0	77	0.76
215227--215292	28	2.4	28	82	2	80	63	6	10	19	1.47
215463--215505	14	2.9	14	80	13	50	27	0	4	67	1.10
229581--229628	20	2.3	21	85	7	62	68	2	2	27	1.11
230010--230062	22	2.5	22	81	9	65	32	1	5	60	1.31
230055--230102	20	2.3	21	79	13	55	37	0	4	58	1.18
231749--231833	43	2.0	44	88	2	127	44	8	10	36	1.69
236554--236581	2	14.0	2	100	0	56	50	0	50	0	1.00
237022--237062	20	2.0	21	90	4	66	26	9	17	46	1.79
242031--242086	30	1.9	30	85	3	78	57	3	1	37	1.27
246100--246142	23	1.9	22	85	4	59	34	2	4	58	1.32
247175--247208	16	2.1	16	88	0	50	73	0	2	23	0.97
254618--254660	6	6.8	6	82	10	50	37	4	11	46	1.61
257829--257867	2	20.0	2	85	15	55	48	0	2	48	1.15
258811--258862	25	2.1	25	85	7	70	40	1	3	53	1.30
265088--265234	73	2.0	73	100	0	294	30	29	10	28	1.91
266125--266175	22	2.3	23	80	10	61	29	0	0	70	0.87
266123--266303	101	1.8	100	87	1	272	25	7	9	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266835--266877	3	14.0	3	95	4	77	65	0	0	34	0.93
267726--267753	2	14.0	2	100	0	56	50	0	0	50	1.00
281505--281546	2	21.0	2	100	0	84	50	0	0	50	1.00
284785--284822	13	3.0	13	84	3	51	39	10	0	50	1.37
287202--287250	21	2.3	22	85	3	64	8	4	18	69	1.30
287259--287310	12	4.4	12	78	4	52	13	7	13	65	1.46
287259--287308	23	2.2	23	85	0	64	14	8	12	66	1.45
288598--288663	26	2.5	27	92	2	107	25	18	36	19	1.94
288800--288845	16	2.9	16	84	9	67	67	0	32	0	0.91
290567--290597	9	3.3	9	95	4	53	77	0	0	22	0.77
293020--293046	1	27.0	1	100	0	54	100	0	0	0	0.00
302781--303064	142	2.0	142	98	1	552	49	7	12	31	1.67
306848--306891	23	1.9	23	85	0	61	54	0	2	43	1.12
307197--307261	2	32.0	2	84	9	87	52	3	0	44	1.16
315107--315214	27	4.0	27	80	4	128	26	21	13	37	1.91
315112--315219	54	2.0	55	90	1	173	26	21	13	37	1.91
323321--323380	30	2.0	30	84	15	81	28	1	5	65	1.23
324240--324273	13	2.8	12	91	8	52	0	0	8	91	0.43
328011--328073	24	2.6	24	82	9	67	68	3	3	25	1.19
328391--328419	14	2.0	15	93	6	51	75	0	0	24	0.80
328535--328594	30	2.0	31	90	3	95	55	6	3	35	1.43
328678--328713	3	12.0	3	93	0	63	2	33	0	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331853--331900	21	2.3	21	85	0	69	35	10	18	35	1.85
332398--332444	16	2.9	16	78	15	51	48	0	0	51	1.00
332369--332430	19	3.3	18	74	24	56	43	1	1	53	1.20
332848--332880	16	1.9	18	88	11	52	27	3	0	69	1.03
333274--333321	22	2.2	22	85	7	62	50	6	0	43	1.27
336310--336337	4	7.0	4	100	0	56	75	0	0	25	0.81
341477--341509	2	16.5	2	100	0	66	51	0	48	0	1.00
349158--349204	17	2.8	17	96	3	87	10	6	34	48	1.63
371128--371165	16	2.3	16	95	4	67	18	10	23	47	1.79
381547--381586	20	2.0	20	100	0	80	45	20	5	30	1.72
383657--384136	242	2.0	242	96	0	890	37	14	16	31	1.88
386926--387021	41	2.3	41	96	0	174	36	28	6	29	1.81
387011--387049	17	2.3	17	86	0	51	46	23	12	17	1.83
400194--400225	17	1.9	17	93	6	57	25	0	3	71	1.00
401298--401357	31	1.9	31	89	0	93	35	23	18	23	1.96
405364--405394	2	15.5	2	100	0	62	48	0	0	51	1.00
406691--406715	6	4.2	6	100	0	50	48	0	32	20	1.50
412070--412176	31	3.8	28	70	23	73	53	3	0	42	1.18
412028--412205	82	2.2	82	81	9	193	50	3	0	46	1.22
419528--419584	24	2.4	24	81	0	69	54	10	7	28	1.60
419542--419588	24	2.0	24	91	0	76	61	8	6	23	1.48
437947--437986	20	2.0	20	85	0	53	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437945--438003	27	2.1	28	84	9	75	54	0	3	42	1.17
439610--439641	6	5.3	6	100	0	64	15	31	34	18	1.93
439833--439864	15	2.1	16	88	11	50	31	0	0	68	0.90
440150--440335	62	2.9	65	84	4	254	35	16	14	33	1.89
440163--440331	65	2.7	62	86	2	230	36	16	11	35	1.86
445954--446030	31	2.6	30	82	10	86	46	0	11	41	1.40
447386--447412	6	4.5	6	100	0	54	0	33	33	33	1.58

Tables:   1

The End!