genome.fa.s15162.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015162.1 Kokia drynarioides strain JFW-HI SEQ_130206, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88138

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6301--6335	18	1.9	18	100	0	70	28	5	22	42	1.76
6585--6630	23	2.0	23	95	0	83	34	23	17	23	1.96
11096--11161	6	10.2	6	73	12	51	24	0	3	72	0.98
11982--12014	15	2.1	16	94	5	59	78	0	15	6	0.93
12082--12114	14	2.3	15	94	5	59	90	0	9	0	0.44
12848--12893	23	2.0	23	91	0	74	32	23	19	23	1.97
22332--22390	27	2.1	28	84	3	75	20	20	5	54	1.63
22988--23923	205	4.6	206	85	2	1073	35	20	23	20	1.96
24163--24224	17	3.6	17	91	0	97	38	0	4	56	1.21
24155--24224	34	2.1	33	86	2	95	41	0	5	52	1.25
25994--26479	59	8.3	59	88	0	699	34	32	4	29	1.77
25994--26479	176	2.8	177	88	0	726	34	32	4	29	1.77
25994--26490	29	17.0	27	75	15	332	34	31	4	29	1.77
27593--27693	28	3.7	26	71	18	71	30	21	13	33	1.93
37924--38012	42	2.1	42	81	4	99	25	28	12	33	1.92
55850--55874	6	4.2	6	100	0	50	0	16	0	84	0.63
56960--57602	39	16.4	39	80	5	609	27	17	27	27	1.98
56960--57602	120	5.5	117	81	5	622	27	17	27	27	1.98
58123--58409	49	5.8	49	75	5	211	18	31	15	35	1.92
58185--58404	50	4.5	50	77	4	196	18	32	15	33	1.92
58137--58401	99	2.7	99	84	2	318	18	31	15	34	1.92
59417--59473	6	9.2	6	75	21	55	0	19	1	78	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59417--59479	30	2.1	30	85	5	83	1	17	1	79	0.89
69477--69511	14	2.5	14	90	0	52	28	17	8	45	1.77
70553--70586	17	2.1	16	88	5	50	11	23	0	64	1.26
70929--70965	19	2.0	18	89	5	56	13	0	8	78	0.96
71482--71520	17	2.5	15	84	12	51	23	5	2	69	1.21
72297--72323	6	4.5	6	100	0	54	70	0	0	29	0.88
72850--72898	11	4.5	11	76	5	55	55	6	0	38	1.25
74043--74102	6	10.2	6	80	8	70	41	0	5	53	1.23
74031--74102	17	4.1	18	83	7	85	38	0	5	55	1.23
74043--74102	11	5.1	12	78	10	70	41	0	5	53	1.23
74043--74117	17	4.4	17	80	6	71	44	1	4	50	1.29
74911--74956	24	1.9	24	95	0	83	50	2	4	43	1.34
74928--74976	18	2.7	18	75	18	57	51	0	2	46	1.12
74928--74996	21	3.3	21	73	23	65	53	0	1	44	1.09
75988--76243	29	8.7	30	71	16	171	34	24	5	35	1.80
75983--76187	59	3.5	58	80	10	195	35	26	5	33	1.79
77580--77677	28	3.4	28	81	2	106	36	7	2	54	1.40
81932--82095	87	1.9	86	86	6	233	27	15	21	34	1.94
83090--83147	23	2.5	24	91	5	100	10	34	5	50	1.59
83976--84073	40	2.5	40	82	0	106	35	17	23	23	1.95
84065--84337	41	6.7	40	78	9	248	30	16	30	21	1.96
84058--84337	82	3.4	82	86	2	341	30	17	30	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83976--84349	41	9.2	41	74	7	165	32	17	28	22	1.96
85705--85893	41	4.6	40	81	7	193	31	19	29	19	1.96
85706--85893	82	2.3	82	84	3	227	31	19	29	19	1.96
86002--86045	19	2.2	20	92	4	72	61	4	0	34	1.16

Tables:   1

The End!