Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01015165.1 Kokia drynarioides strain JFW-HI SEQ_130209, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 28664
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33

Warning! 27 characters in sequence are not A, C, G, or T


Found at i:26975 original size:50 final size:52

Alignment explanation


    Indices: 26858--26975  Score: 152
    Period size: 50  Copynumber: 2.3  Consensus size: 52

      26848 TGGATTACTA

                                                        *    *   
      26858 AATGCATGACTTGT-TTTAATGATGCAAACTTAACTAATCATGAGAGTTTCAT
          1 AATGCATGACTT-TATTTAATGATGCAAACTTAACTAATCATGAAAGTTACAT

                  * * *               *                         
      26910 AATGCAAGTCATTATTT-ATGATGCATACTTAACTAA-CATGAAAGTTACAT
          1 AATGCATGACTTTATTTAATGATGCAAACTTAACTAATCATGAAAGTTACAT

                            
      26960 AATGCATGACTTTATT
          1 AATGCATGACTTTATT

      26976 AATTACAGAT


Statistics
Matches: 56,  Mismatches: 9, Indels: 4
        0.81            0.13        0.06

Matches are distributed among these distances:
  50   25  0.45
  51   19  0.34
  52   12  0.21

ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36


Consensus pattern (52 bp):   
AATGCATGACTTTATTTAATGATGCAAACTTAACTAATCATGAAAGTTACAT
Done.