genome.fa.s15167.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015167.1 Kokia drynarioides strain JFW-HI SEQ_130211, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  274785

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13492--13520	12	2.3	13	94	5	51	51	0	17	31	1.45
21716--21772	21	2.8	21	97	2	107	26	21	29	22	1.99
26826--26874	16	2.9	17	84	9	55	51	0	6	42	1.27
26833--26874	20	2.2	18	87	8	57	52	0	2	45	1.13
42621--42694	37	2.0	37	91	0	121	36	18	16	28	1.93
45767--45820	26	2.1	26	96	0	99	27	3	20	48	1.66
47034--47219	103	1.8	101	80	6	223	39	15	10	34	1.82
47727--47796	35	2.0	35	97	2	124	60	5	15	17	1.53
49477--49589	29	3.9	30	87	5	160	36	26	2	34	1.71
49477--49596	58	2.1	59	88	4	181	37	26	2	33	1.70
53466--53561	49	2.0	49	97	0	183	27	4	26	42	1.73
55016--55049	17	2.0	17	94	0	59	44	0	2	52	1.16
55406--55433	2	14.0	2	100	0	56	50	0	0	50	1.00
58892--58961	26	2.7	25	86	4	95	15	21	4	58	1.54
59486--59546	27	2.3	27	91	0	95	16	32	29	21	1.95
62758--62795	19	2.0	19	89	0	58	50	5	5	39	1.48
77769--77798	6	4.8	6	95	4	51	83	0	13	3	0.77
79789--79848	17	3.5	17	80	8	68	46	0	3	50	1.18
79889--79944	15	3.7	15	86	9	87	41	26	12	19	1.87
79886--79944	30	2.0	30	96	0	109	38	27	11	22	1.89
81706--81992	29	9.9	28	76	9	247	35	28	3	32	1.75
81702--82028	58	5.6	58	82	4	325	34	30	3	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93171--93223	27	2.0	27	88	0	79	20	18	5	54	1.64
93985--94147	48	3.4	48	94	0	290	36	14	25	23	1.93
94845--94901	17	3.4	17	80	9	71	45	0	1	52	1.11
96713--97171	30	15.6	29	77	7	365	34	28	3	33	1.75
96713--97171	59	7.8	58	79	9	398	34	28	3	33	1.75
100561--100617	17	3.4	17	80	9	71	45	0	1	52	1.11
102429--102887	30	15.6	29	77	7	365	34	28	3	33	1.75
102429--102887	59	7.8	58	79	9	398	34	28	3	33	1.75
106770--106808	21	1.9	20	89	5	60	46	10	0	43	1.37
107079--107110	2	16.0	2	93	0	55	46	0	0	53	1.00
107249--107301	20	2.6	21	84	6	72	66	1	0	32	1.03
112931--113008	31	2.6	30	77	4	77	38	8	8	43	1.68
115797--115863	27	2.5	28	85	4	93	26	13	28	31	1.94
128772--128831	22	2.8	22	85	7	70	68	1	13	16	1.29
128797--128826	15	1.9	16	93	6	53	70	0	13	16	1.18
131834--131892	24	2.5	24	85	0	91	32	25	20	22	1.98
136853--137008	43	3.6	43	80	0	195	26	20	24	28	1.99
140030--140072	22	1.9	23	90	4	70	39	0	9	51	1.34
145160--145191	2	16.0	2	100	0	64	0	50	0	50	1.00
148162--148200	18	2.2	18	90	0	60	20	12	17	48	1.80
175089--175180	20	4.5	19	76	18	80	38	1	3	57	1.22
175126--175186	9	6.4	9	72	10	50	31	1	3	63	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185309--185471	59	2.8	59	88	3	240	34	1	25	37	1.67
185303--185483	29	6.1	29	81	6	166	33	2	27	36	1.69
187390--187461	6	12.7	6	71	11	53	54	1	1	43	1.17
187390--187461	11	6.4	11	71	10	56	54	1	1	43	1.17
187390--187494	17	6.2	17	79	3	104	52	3	1	41	1.30
187426--187459	16	2.1	16	94	0	59	61	0	0	38	0.96
187894--188431	207	2.6	200	82	5	682	22	22	19	36	1.95
188258--188579	151	2.1	152	91	0	529	23	22	18	35	1.95
193769--193812	6	7.5	6	82	5	54	45	2	0	52	1.13
193769--193815	17	2.7	18	76	6	51	44	2	0	53	1.12
193806--193849	17	2.5	17	81	3	52	50	6	0	43	1.29
197719--197884	77	2.1	79	91	5	266	36	6	7	49	1.57
198663--198704	12	3.6	12	77	6	50	23	14	21	40	1.90
198640--198709	23	3.0	23	85	2	95	28	12	17	41	1.86
198693--198738	23	2.0	23	83	8	58	39	15	15	30	1.88
201657--201728	30	2.4	30	82	11	85	40	0	1	58	1.07
201694--201767	23	3.7	20	77	15	64	43	0	1	55	1.08
201716--201766	19	2.6	19	81	9	59	45	0	1	52	1.12
201714--201775	28	2.2	28	88	8	92	46	0	3	50	1.17
201716--201779	20	3.3	19	80	8	67	42	0	3	54	1.16
206733--206758	2	13.0	2	100	0	52	50	0	0	50	1.00
209131--209159	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224801--224844	24	1.9	22	82	17	54	59	6	6	27	1.49
255064--255117	29	1.9	27	85	7	72	57	1	3	37	1.27
255165--255191	2	13.5	2	100	0	54	51	0	0	48	1.00
259779--259821	21	2.0	21	86	4	59	30	11	20	37	1.89
260858--260899	15	2.9	14	85	3	57	21	0	45	33	1.52
261396--261428	16	2.1	17	88	11	52	48	6	0	45	1.27
267265--267430	30	5.6	27	69	21	77	25	17	10	45	1.81
267257--267428	59	2.9	59	85	6	222	25	18	10	46	1.80
268641--268678	12	2.9	13	80	11	51	63	13	21	2	1.42
269817--269947	30	4.4	30	79	5	142	39	21	1	37	1.63
269909--269986	40	2.0	40	92	2	131	35	24	1	38	1.64
269845--270026	99	1.8	100	82	3	233	37	21	1	39	1.63
269945--270026	29	2.8	29	83	1	101	35	21	2	40	1.67
274644--274701	11	5.3	11	85	10	66	74	0	24	1	0.92
274655--274701	4	11.8	4	86	8	69	76	0	23	0	0.78
274655--274701	21	2.3	21	89	7	71	76	0	23	0	0.78

Tables:   1

The End!