genome.fa.s15169.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015169.1 Kokia drynarioides strain JFW-HI SEQ_130213, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  313940

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2129--2174	22	2.0	23	83	4	58	60	2	8	28	1.38
2190--2443	43	5.9	43	84	1	287	24	17	27	30	1.97
2198--2443	85	2.9	86	84	2	325	25	17	27	29	1.98
2190--2550	128	2.7	134	84	6	430	24	18	27	29	1.98
2388--2499	56	2.0	56	85	3	154	28	19	25	26	1.99
2444--2557	42	2.7	43	91	5	187	23	20	27	28	1.99
7274--7349	38	2.0	38	97	0	143	36	22	23	17	1.94
8122--8170	26	2.0	25	88	8	73	77	4	0	18	0.92
8978--9015	15	2.4	16	86	8	51	2	15	2	78	0.97
17071--17509	219	2.0	219	94	0	763	26	15	16	41	1.88
26360--26404	22	2.0	22	95	0	81	60	0	20	20	1.37
40635--40680	14	3.3	15	76	11	53	34	4	19	41	1.71
41108--41141	18	1.9	17	88	5	50	52	0	2	44	1.16
64312--64357	22	2.1	22	100	0	92	52	26	4	17	1.63
74215--74251	18	2.1	18	89	0	56	67	16	8	8	1.40
76389--76430	18	2.4	17	88	8	57	66	4	0	28	1.12
78000--78041	14	2.8	16	78	14	52	42	0	0	57	0.99
78231--78309	31	2.5	31	93	4	133	35	15	3	45	1.64
78297--78363	33	2.0	33	97	0	125	37	17	5	38	1.75
82303--82331	13	2.1	14	93	6	51	37	6	6	48	1.57
93459--93511	27	2.1	24	86	10	70	66	5	7	20	1.38
93459--93511	26	2.0	27	85	3	72	66	5	7	20	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101239--101598	58	6.2	59	75	13	244	33	29	3	33	1.76
101252--101599	59	6.0	59	76	11	274	33	29	3	33	1.75
101252--101518	29	9.1	29	78	10	215	34	28	4	32	1.76
101522--101622	28	3.5	28	72	20	73	35	26	3	33	1.75
101578--101639	28	2.2	28	88	0	97	37	25	8	29	1.85
113030--113059	12	2.5	12	88	0	51	56	6	0	36	1.26
115801--115828	2	14.0	2	100	0	56	0	50	0	50	1.00
121113--121182	17	3.9	18	78	15	74	52	0	4	42	1.20
121134--121188	17	3.2	16	80	12	56	54	0	3	41	1.18
121195--121245	25	2.0	26	84	3	68	66	0	3	29	1.09
121432--121494	18	3.7	17	71	12	58	57	1	0	41	1.08
121435--121512	30	2.4	31	83	14	95	62	1	0	35	1.03
121453--121505	23	2.2	25	86	6	74	62	1	0	35	1.06
122861--122909	21	2.2	23	85	7	66	34	0	0	65	0.93
125767--125796	2	15.0	2	100	0	60	50	0	50	0	1.00
126929--127037	53	2.1	53	87	1	157	55	14	3	26	1.56
136239--136311	16	4.4	17	78	14	55	73	2	0	23	0.95
136244--136305	16	3.6	17	79	12	65	70	3	0	25	1.02
136238--136298	26	2.3	26	77	8	70	72	1	0	26	0.94
142171--142267	25	3.8	25	85	6	124	40	18	29	11	1.86
146921--146957	19	1.9	19	100	0	74	37	21	10	29	1.88
162394--162428	17	2.1	17	88	0	52	25	5	31	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182494--182538	6	7.5	6	94	0	81	28	0	71	0	0.87
188924--188961	6	6.3	6	93	0	58	31	31	5	31	1.80
193278--193447	83	2.1	83	87	5	247	45	14	6	33	1.70
194525--194768	81	3.0	81	95	1	436	50	8	5	35	1.55
194748--194793	22	2.1	22	84	4	58	67	2	6	23	1.25
199955--200055	49	2.1	49	88	3	150	19	16	26	36	1.93
200436--200504	29	2.3	30	85	7	86	40	5	7	46	1.55
200448--200504	29	1.9	30	89	3	89	42	7	7	43	1.58
212091--212116	6	4.3	6	100	0	52	30	53	0	15	1.42
226285--226319	2	17.5	2	100	0	70	0	0	48	51	1.00
229937--229969	15	2.3	15	90	10	52	27	0	0	72	0.85
236637--236679	15	2.6	17	78	10	54	67	9	0	23	1.19
237773--237802	2	15.5	2	93	6	53	50	0	0	50	1.00
243342--243618	138	2.0	138	95	0	500	36	9	12	42	1.75
243856--243908	27	2.0	27	84	0	70	45	16	3	33	1.66
244964--245157	96	2.0	96	95	0	352	32	25	9	32	1.88
247832--247862	2	15.5	2	100	0	62	48	0	51	0	1.00
259469--259537	34	2.0	34	100	0	138	28	17	5	47	1.70
269157--269212	8	7.0	8	91	0	85	0	64	25	10	1.26
269151--269212	20	3.1	20	92	0	106	0	64	24	11	1.26
269153--269203	12	4.2	12	94	0	84	0	66	25	7	1.18
269276--269300	13	1.9	13	100	0	50	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274669--274724	23	2.5	23	82	2	60	26	8	21	42	1.82
280795--280834	3	13.3	3	100	0	80	32	0	0	67	0.91
280960--281011	15	3.6	15	79	10	63	76	0	19	3	0.93
283987--284088	52	2.0	51	86	5	143	35	23	10	30	1.89
285676--285739	21	3.1	21	78	13	78	67	15	4	12	1.39

Tables:   1

The End!