genome.fa.s15171.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015171.1 Kokia drynarioides strain JFW-HI SEQ_130215, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  239922

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4247--4641	204	1.9	203	83	5	501	29	24	15	30	1.96
10507--10722	112	1.9	112	95	1	389	43	6	11	38	1.65
29941--29985	20	2.2	20	100	0	90	20	0	8	71	1.12
29992--30033	21	2.0	20	90	4	66	40	14	4	40	1.67
32649--32682	10	3.4	10	95	0	59	23	0	0	76	0.79
32970--33022	18	2.9	17	81	10	61	32	9	11	47	1.71
35251--35297	13	3.4	13	76	23	51	34	0	0	65	0.93
35262--35310	24	2.0	25	88	11	75	36	0	0	63	0.95
43183--43248	31	2.1	32	88	2	98	43	10	4	40	1.59
45161--45198	18	2.2	17	90	4	58	68	0	0	31	0.90
47649--47697	2	24.5	2	95	0	89	2	48	0	48	1.12
55402--55481	17	4.6	17	88	1	106	41	1	3	53	1.27
55446--55494	24	2.1	23	88	3	71	42	2	4	51	1.32
55414--55484	6	12.2	6	71	16	51	42	0	4	53	1.20
56160--56227	3	22.7	3	82	5	66	57	1	2	38	1.23
56134--56174	22	1.9	22	90	5	66	46	4	4	43	1.46
56138--56211	33	2.2	33	87	2	103	52	4	4	39	1.39
56168--56227	24	2.5	24	81	8	77	56	1	3	38	1.26
56226--56260	3	11.3	3	87	6	52	31	0	2	65	1.07
56556--56751	64	3.0	66	88	5	274	20	28	38	12	1.89
56559--56762	66	3.1	65	86	4	268	21	28	38	11	1.88
57399--57567	29	5.8	29	88	3	207	33	28	4	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57424--57569	30	4.9	31	89	7	200	34	29	3	32	1.74
57399--57651	29	8.7	29	74	15	184	33	27	5	33	1.80
57958--58132	96	1.8	96	87	2	262	28	17	13	40	1.87
69773--69797	2	12.5	2	100	0	50	52	0	0	48	1.00
73265--73295	2	15.5	2	100	0	62	51	0	0	48	1.00
76370--76412	21	2.0	21	81	0	50	51	0	0	48	1.00
77930--77986	18	3.2	18	87	0	87	47	14	1	36	1.54
77933--77983	14	3.6	14	81	0	57	49	15	1	33	1.56
81502--81544	15	2.7	16	82	7	52	23	0	13	62	1.31
81921--81945	1	25.0	1	100	0	50	0	0	0	100	0.00
84109--84136	3	9.3	3	100	0	56	32	0	0	67	0.91
84282--84348	30	2.3	29	83	14	86	46	0	1	52	1.09
86401--86442	21	2.0	22	81	13	52	52	4	4	38	1.44
86666--86725	30	2.0	30	84	12	79	48	0	15	36	1.45
93267--93484	109	2.0	109	99	0	427	44	20	10	25	1.83
95774--95838	13	5.1	13	70	17	55	41	6	15	36	1.72
95774--95838	26	2.6	25	80	11	87	41	6	15	36	1.72
96610--96699	42	2.1	41	82	13	112	32	22	7	37	1.83
96665--96729	32	2.0	32	100	0	130	38	27	6	27	1.80
100330--100424	49	1.9	49	93	0	163	48	6	9	35	1.61
101783--101816	18	1.9	17	88	5	50	82	8	2	5	0.93
102627--102688	11	5.9	11	72	24	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102627--102686	19	3.0	20	81	13	86	50	0	0	50	1.00
102644--102695	13	3.5	13	73	26	50	48	0	0	51	1.00
102633--102677	21	2.1	22	91	4	74	46	0	0	53	1.00
102636--102706	31	2.3	32	92	7	121	50	0	0	49	1.00
102783--102807	13	1.9	13	100	0	50	0	0	16	84	0.63
103586--103614	9	3.3	9	95	4	51	44	0	0	55	0.99
109398--109499	50	2.0	50	100	0	204	45	5	6	42	1.55
110752--110795	14	2.8	16	80	16	56	47	0	0	52	1.00
112804--112850	23	2.0	23	100	0	94	12	19	25	42	1.86
115938--116112	84	2.1	82	80	10	187	39	15	9	35	1.80
116461--116573	9	11.7	9	69	12	64	30	3	1	63	1.21
116461--116572	20	5.7	19	71	17	70	31	3	1	63	1.22
116517--116574	21	2.8	21	86	2	73	31	1	0	67	1.01
122005--122861	132	6.7	129	82	8	732	27	25	29	17	1.97
122941--123085	72	2.0	72	98	0	281	26	29	14	29	1.95
125095--125555	172	2.7	169	82	6	545	38	22	14	24	1.92
131729--131880	75	2.0	75	92	0	250	36	13	14	36	1.85
142410--142436	9	3.0	9	100	0	54	0	11	0	88	0.50
147968--148002	17	2.0	18	88	5	54	71	0	0	28	0.86
148349--148399	15	3.6	14	78	17	61	41	0	0	58	0.98
148350--148399	7	7.1	7	74	17	50	42	0	0	58	0.98
150008--150038	16	1.9	16	93	0	53	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152650--152875	88	2.5	88	87	6	312	37	22	8	30	1.85
152957--153089	28	4.7	28	74	17	107	63	1	3	30	1.21
152957--153080	10	13.1	9	67	21	58	65	1	4	29	1.20
152946--153089	56	2.6	56	79	12	156	63	2	3	30	1.22
152984--153150	19	8.8	20	69	14	79	61	2	5	29	1.34
153453--153670	90	2.4	90	85	6	289	31	9	21	37	1.85
159077--159141	24	2.9	22	80	8	76	58	1	0	40	1.07
170025--170070	17	2.8	17	77	6	51	69	4	0	26	1.07
170925--171048	62	2.0	62	100	0	248	30	22	24	22	1.99
171411--171498	28	3.2	29	66	26	73	34	9	14	42	1.78
176264--176325	32	1.9	33	86	3	90	53	3	19	24	1.60
176259--176329	37	1.9	37	97	0	133	54	2	18	23	1.56
180625--180702	26	2.8	29	73	15	74	41	0	0	58	0.98
193715--193748	18	1.9	18	88	5	52	41	20	5	32	1.76
200443--200481	16	2.6	14	85	14	60	41	0	2	56	1.13
202898--202990	46	2.0	46	100	0	186	33	17	17	32	1.93
208662--208719	27	2.2	25	79	11	62	67	5	3	24	1.27
209596--209647	18	2.8	18	82	14	61	44	3	1	50	1.31
223947--223986	20	2.1	20	86	9	57	40	0	12	47	1.41
226506--226531	13	2.0	13	100	0	52	46	7	0	46	1.31
226541--226606	31	2.2	31	86	10	93	57	3	1	37	1.23
228736--228821	4	21.0	4	70	13	50	66	0	31	2	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228737--228761	13	1.9	13	100	0	50	76	0	24	0	0.80
228736--228806	21	3.4	22	78	7	67	66	0	32	1	1.01
228745--228817	25	3.0	24	76	18	71	65	0	31	2	1.06
234656--234680	12	2.1	12	100	0	50	52	0	0	48	1.00
239380--239417	16	2.4	16	91	8	60	26	0	2	71	1.00

Tables:   1

The End!