genome.fa.s15177.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015177.1 Kokia drynarioides strain JFW-HI SEQ_130221, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  368428

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--51	16	3.2	16	73	21	52	34	0	6	60	1.21
485--509	12	2.1	12	100	0	50	52	0	0	48	1.00
6083--6144	31	2.0	32	83	3	81	61	0	0	38	0.96
6650--6688	18	2.1	19	85	4	53	64	0	2	33	1.08
23440--23481	5	8.4	5	100	0	84	19	0	40	40	1.51
24287--24386	50	2.0	50	98	0	191	16	19	34	31	1.93
26432--26464	7	4.7	7	100	0	66	42	0	42	15	1.46
27086--27144	27	2.1	29	81	9	70	59	3	0	37	1.14
30032--30065	18	1.9	17	88	5	50	47	17	0	35	1.48
30093--30127	13	2.7	13	90	0	52	40	11	0	48	1.39
51379--51405	2	13.5	2	100	0	54	51	0	0	48	1.00
62509--62544	7	5.1	7	100	0	72	44	27	13	13	1.82
69790--69870	40	2.0	40	87	0	117	30	4	23	40	1.76
74974--75003	10	3.0	10	100	0	60	80	20	0	0	0.72
84983--85068	31	2.9	29	78	11	88	47	17	6	27	1.73
84992--85068	26	2.8	26	84	9	91	49	15	6	28	1.69
92954--93006	2	27.0	2	96	3	99	49	0	0	50	1.00
94547--94867	29	11.0	29	76	10	226	38	3	23	33	1.72
94547--94865	59	5.5	55	72	13	158	38	3	23	33	1.72
95542--95585	2	22.0	2	90	0	70	45	0	4	50	1.22
119765--119796	16	2.0	16	100	0	64	12	6	50	31	1.65
122997--123448	224	2.0	225	96	0	834	53	8	13	24	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123900--123925	5	5.2	5	100	0	52	80	0	0	19	0.71
135554--135611	28	2.1	28	80	6	64	50	5	6	37	1.52
140023--140056	2	17.0	2	100	0	68	50	50	0	0	1.00
140066--140098	2	16.5	2	93	0	57	48	3	0	48	1.17
148466--148498	10	3.2	11	87	12	52	45	0	0	54	0.99
148466--148499	14	2.5	14	85	4	52	47	0	0	52	1.00
148887--148917	12	2.5	12	94	5	53	83	0	0	16	0.64
163193--163315	61	2.0	61	100	0	246	26	22	13	38	1.90
167802--167836	18	1.9	18	94	0	61	42	0	2	54	1.15
167792--167834	10	4.5	10	80	11	54	37	0	2	60	1.10
170778--170820	3	14.3	3	95	0	77	65	0	0	34	0.93
186455--186513	31	1.9	31	92	0	100	33	3	10	52	1.52
196085--196114	2	15.0	2	92	0	51	0	46	0	53	1.00
201130--201199	36	1.9	37	94	2	124	34	12	11	41	1.79
206995--207057	31	2.0	31	93	0	108	39	6	6	47	1.54
222615--222703	20	4.3	20	79	8	90	6	6	16	69	1.32
222629--222706	22	3.8	20	81	6	86	8	5	14	71	1.27
222728--222786	32	1.9	30	89	6	91	11	0	22	66	1.24
222913--222958	21	2.2	21	84	7	58	26	0	8	65	1.21
224246--224310	27	2.4	27	76	0	76	49	0	3	47	1.17
225098--225142	22	2.0	24	86	8	67	20	2	20	57	1.51
240518--240580	28	2.2	28	85	2	81	49	4	6	39	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252378--252427	2	25.5	2	95	4	93	52	0	0	48	1.00
256347--256380	2	17.0	2	100	0	68	50	0	0	50	1.00
270463--270519	30	1.9	30	85	0	78	54	12	0	33	1.38
270968--270996	13	2.1	14	93	6	51	6	31	3	58	1.41
272155--272189	14	2.4	15	90	4	54	37	0	2	60	1.12
272713--272737	6	4.2	6	100	0	50	16	0	0	84	0.63
275463--275487	13	1.9	13	100	0	50	32	0	4	64	1.12
275638--275699	28	2.2	29	82	8	74	51	3	3	41	1.34
275550--275738	100	1.9	101	86	3	274	44	2	4	48	1.36
283246--283316	37	1.9	37	88	8	110	33	14	23	28	1.94
285811--285853	19	2.2	19	83	4	59	0	30	0	69	0.88
288950--288993	15	3.0	15	80	6	54	45	0	4	50	1.22
290086--290172	27	3.2	26	76	13	75	58	9	10	21	1.59
290086--290193	56	1.9	57	84	1	146	56	11	9	23	1.62
290538--290577	21	2.0	21	85	5	55	45	5	0	50	1.23
300909--300938	2	15.0	2	92	0	51	50	0	3	46	1.18
311290--311345	29	1.9	29	85	7	78	41	8	12	37	1.74
319907--319933	4	6.8	4	100	0	54	25	0	25	48	1.52
328953--328984	2	16.0	2	100	0	64	0	0	50	50	1.00
331358--331404	18	2.5	19	86	6	69	23	12	4	59	1.51
331370--331407	18	2.1	18	100	0	76	28	10	5	55	1.56
337260--337326	31	2.2	31	89	5	100	41	11	11	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337444--337524	42	1.9	42	82	0	99	43	20	9	25	1.83
347264--347298	10	3.5	10	88	0	52	54	2	2	40	1.30
352351--352377	11	2.5	11	100	0	54	14	25	11	48	1.77
354952--355001	13	3.8	13	80	12	50	44	22	0	34	1.53
354952--355001	26	1.9	26	83	0	64	44	22	0	34	1.53

Tables:   1

The End!