genome.fa.s15183.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015183.1 Kokia drynarioides strain JFW-HI SEQ_130227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190473

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794--1032	51	4.6	51	83	2	264	32	14	24	29	1.94
3357--3425	27	2.6	27	77	22	74	71	7	1	20	1.18
3469--3508	21	2.0	20	85	5	53	65	5	2	27	1.27
3622--3675	26	2.1	26	82	0	63	66	9	7	16	1.42
4603--5677	50	21.6	50	75	5	649	24	23	15	37	1.93
4610--5677	150	7.1	148	77	5	765	24	23	15	36	1.93
6632--6854	51	4.3	51	83	3	259	33	16	23	27	1.95
13448--13500	27	2.0	27	96	0	97	20	26	22	30	1.98
13903--13933	15	2.1	14	94	5	53	45	6	29	19	1.75
19561--19599	16	2.4	16	83	8	53	56	7	35	0	1.28
20578--20636	22	3.1	19	80	17	61	18	11	11	57	1.64
20596--20633	18	2.1	18	90	0	58	15	13	13	57	1.65
21225--21267	17	2.4	18	76	3	52	76	2	18	2	1.00
25808--25843	18	2.0	18	94	0	63	36	16	11	36	1.84
26366--26418	8	6.6	8	82	6	54	11	1	5	81	0.94
29451--29491	8	5.0	8	82	5	55	2	12	2	82	0.86
29451--29491	17	2.5	17	80	7	50	2	12	2	82	0.86
31899--31934	13	2.8	13	87	4	56	0	50	0	50	1.00
44547--44571	13	1.9	13	100	0	50	40	0	0	60	0.97
52795--52863	21	3.2	21	72	11	77	34	10	2	52	1.50
52806--52871	16	4.4	16	67	18	52	34	9	1	54	1.41
52789--52875	43	2.0	43	100	0	174	34	9	2	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56273--56318	22	2.1	22	88	8	67	21	23	0	54	1.45
66236--66609	23	16.1	23	84	1	419	45	14	4	35	1.65
70178--70281	43	2.4	43	88	3	147	12	24	13	50	1.76
77931--77963	14	2.2	15	89	10	50	45	0	0	54	0.99
81285--81413	65	2.0	65	87	3	188	22	38	21	17	1.93
82289--82346	23	2.5	23	80	0	71	20	17	18	43	1.89
82290--82349	12	5.2	12	78	6	61	20	16	20	43	1.88
83457--83494	2	19.5	2	94	5	69	50	0	0	50	1.00
86311--86388	23	3.4	23	87	0	120	38	19	20	21	1.94
90395--90528	40	3.3	40	81	2	135	27	14	29	28	1.96
90846--90957	40	2.8	40	83	2	136	28	17	26	26	1.98
90846--91012	40	4.1	40	77	10	124	28	18	28	24	1.98
94338--94381	23	2.0	22	83	16	56	36	9	22	31	1.86
104325--104397	24	3.1	24	80	9	80	17	34	0	47	1.48
106732--106771	18	2.2	18	86	0	53	37	5	5	52	1.45
118317--118351	17	2.2	17	90	10	56	48	17	5	28	1.69
125224--125273	20	2.5	21	87	9	70	62	6	0	32	1.20
134331--134364	17	1.9	18	88	5	52	38	5	2	52	1.41
137408--137465	17	3.3	17	76	9	62	50	5	3	41	1.42
137930--138492	206	2.7	206	86	1	725	20	22	21	35	1.96
148753--148886	57	2.3	58	75	10	130	30	9	32	26	1.89
148929--149157	29	7.8	29	80	10	232	32	3	29	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148926--149162	59	4.0	59	86	4	309	32	3	29	34	1.76
150869--150899	10	2.9	11	90	9	55	45	0	0	54	0.99
150832--150888	17	3.4	16	78	7	69	45	1	1	50	1.22
151517--151568	24	2.2	24	82	6	61	48	7	3	40	1.50
152637--153243	30	20.6	29	72	13	418	37	29	2	30	1.71
152638--153243	59	10.3	59	84	5	688	37	29	2	30	1.71
154719--155024	59	5.3	58	78	14	255	36	4	26	33	1.77
154720--154965	85	2.9	85	92	3	381	35	4	26	33	1.77
154719--155003	29	10.0	29	75	19	244	35	4	27	32	1.76
154748--155024	30	9.6	29	70	19	138	36	4	26	32	1.77
154898--155039	59	2.4	60	84	6	184	34	4	29	31	1.77
154948--155039	29	3.1	28	73	15	87	39	3	26	31	1.72
154926--155040	30	3.9	31	73	15	109	36	4	26	33	1.76
154926--155055	30	4.4	28	70	17	79	36	4	26	33	1.77
156830--156900	17	4.2	17	75	8	74	53	4	2	39	1.35
157512--157550	2	19.5	2	100	0	78	51	0	0	48	1.00
158005--158077	34	2.1	34	82	5	85	39	13	10	35	1.80
158972--159047	40	1.9	40	100	0	152	39	11	21	27	1.88
159293--159365	31	2.4	31	79	6	76	34	9	6	49	1.62
162142--162328	41	4.6	41	82	2	196	33	21	25	19	1.97
162308--162344	19	1.9	19	94	0	65	35	13	27	24	1.93
164569--164612	22	2.0	22	86	4	63	68	6	6	18	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164639--164721	41	2.0	41	95	0	148	40	14	27	16	1.88
164739--164840	41	2.5	41	84	4	127	30	14	29	25	1.95
167005--167040	18	2.0	18	88	0	54	19	22	22	36	1.95
167057--167385	43	7.7	43	79	4	319	29	17	24	29	1.97
167057--167385	85	3.8	86	81	3	344	29	17	24	29	1.97
167057--167371	128	2.4	130	83	3	379	29	17	24	28	1.97
169407--170161	376	2.0	378	95	0	1370	37	21	12	27	1.90
176233--176296	22	2.9	23	81	11	71	20	4	3	71	1.17
176252--176296	11	4.1	11	80	11	56	17	4	2	75	1.07
179142--179770	319	2.0	319	92	1	1064	33	24	12	30	1.91
187936--187999	21	3.2	21	78	8	62	37	3	1	57	1.24
187922--187999	40	2.0	39	82	7	95	35	2	2	58	1.25

Tables:   1

The End!