genome.fa.s15184.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015184.1 Kokia drynarioides strain JFW-HI SEQ_130228, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  277099

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259--321	4	15.2	4	82	12	65	0	33	0	66	0.92
259--320	13	4.9	13	76	5	65	0	32	0	67	0.91
259--321	17	3.5	17	78	8	72	0	33	0	66	0.92
18062--18086	3	8.3	3	100	0	50	32	0	0	68	0.90
19097--19177	17	4.7	17	81	6	92	44	0	2	53	1.14
19091--19163	6	12.3	6	78	8	78	42	0	2	54	1.14
19066--19164	41	2.4	41	83	6	121	43	0	4	52	1.20
19095--19177	34	2.4	34	84	6	105	45	0	2	51	1.14
19929--20163	30	7.9	29	72	10	163	37	28	2	31	1.71
19959--20223	118	2.2	118	85	5	349	36	28	3	31	1.74
19939--20220	29	9.6	27	75	16	172	36	27	3	31	1.74
19939--20221	59	4.8	57	85	7	309	36	27	3	31	1.74
22087--22145	30	1.9	31	82	3	75	25	1	6	66	1.26
23255--23304	2	25.5	2	95	4	93	50	0	0	50	1.00
26254--26305	24	2.2	24	86	6	70	51	15	7	25	1.69
30121--30168	13	3.6	14	75	11	55	56	10	4	29	1.52
30121--30171	26	1.9	26	84	4	66	54	11	3	29	1.54
31940--32235	61	4.9	59	81	7	310	27	16	17	38	1.91
32327--32558	88	2.6	88	83	8	283	39	13	15	31	1.86
42644--42705	29	2.1	31	85	11	85	40	4	3	51	1.39
42893--42933	14	2.9	14	79	20	50	39	0	9	51	1.35
43616--43712	31	3.0	31	77	8	104	50	8	1	40	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43616--43710	32	2.8	37	67	16	96	51	8	1	38	1.39
54487--54571	42	2.1	39	82	6	98	54	3	2	40	1.31
56428--56554	60	2.1	61	86	4	177	58	13	3	25	1.50
56805--56867	33	1.9	33	93	6	110	41	19	7	31	1.80
58871--59053	29	6.2	28	74	12	145	36	21	1	39	1.64
58871--59024	58	2.6	57	85	9	186	37	20	1	40	1.61
59223--59282	25	2.4	25	83	5	68	18	6	8	66	1.40
60041--60079	20	2.0	20	89	0	60	35	7	2	53	1.43
61126--61181	16	3.6	16	77	15	55	19	5	0	75	1.00
61131--61187	24	2.4	23	85	5	69	21	5	0	73	1.02
62639--62678	6	7.2	6	81	16	50	82	15	0	2	0.77
62648--62678	10	3.0	10	95	4	53	87	12	0	0	0.55
62639--62678	16	2.4	17	87	8	64	82	15	0	2	0.77
64329--64374	24	1.9	24	86	0	65	56	15	4	23	1.57
75644--75700	27	2.2	24	82	17	62	47	1	1	49	1.22
85286--85314	15	2.0	15	93	6	51	34	3	6	55	1.44
85673--85745	22	3.3	21	73	19	60	42	2	0	54	1.14
86020--86094	37	2.0	37	92	5	125	44	21	8	26	1.80
98935--98983	26	1.9	25	87	4	71	53	0	4	42	1.20
101029--101065	14	2.4	17	82	17	53	32	0	0	67	0.91
104902--104950	25	2.0	24	96	4	89	26	12	20	40	1.87
107984--108568	293	2.0	291	98	0	1143	32	16	17	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109339--109400	31	2.0	31	93	0	106	53	4	3	38	1.39
110687--110790	23	4.4	23	78	7	111	43	21	23	12	1.86
110695--110790	48	2.0	45	80	11	104	42	21	22	12	1.87
114778--114806	6	4.8	6	100	0	58	0	65	17	17	1.27
117545--117781	108	2.2	108	79	4	264	43	18	19	18	1.88
123203--123255	20	2.5	20	82	17	63	52	0	0	47	1.00
128070--128147	23	3.3	22	73	15	66	47	19	19	14	1.82
128148--128222	23	3.2	22	75	11	69	41	18	28	12	1.86
131450--131623	85	2.0	85	94	0	303	21	32	4	42	1.71
133688--133733	20	2.3	20	76	0	56	63	0	32	4	1.14
139381--139583	100	2.0	101	93	2	345	24	22	16	36	1.94
140551--140577	2	13.5	2	100	0	54	48	0	0	51	1.00
140802--140848	24	2.0	24	86	0	67	34	4	10	51	1.56
142642--142671	8	3.9	8	95	4	53	90	0	10	0	0.47
145238--145263	3	8.7	3	100	0	52	0	34	0	65	0.93
145583--145611	2	14.5	2	100	0	58	0	48	0	51	1.00
146353--146377	3	8.3	3	100	0	50	0	32	0	68	0.90
148984--149028	15	3.0	15	76	0	54	40	8	33	17	1.81
151805--151837	14	2.4	14	85	14	50	66	9	0	24	1.20
163578--163606	5	5.8	5	100	0	58	0	0	37	62	0.96
164332--164362	14	2.2	14	94	0	53	61	0	6	32	1.21
174369--174474	45	2.4	45	81	0	131	37	18	26	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174393--174491	45	2.2	45	83	3	119	38	22	25	14	1.91
174593--174652	24	2.5	24	83	5	77	31	25	35	8	1.85
176159--176332	43	4.0	43	96	0	303	18	35	31	14	1.91
183136--183262	23	5.4	23	86	5	157	10	22	23	44	1.83
183170--183309	69	2.0	69	85	10	189	11	22	22	43	1.85
189644--189705	29	2.1	29	81	0	70	29	0	3	67	1.06
191006--191062	31	2.0	29	83	13	73	38	15	12	33	1.85
195940--195978	21	1.9	20	94	5	69	28	30	7	33	1.85
208033--208963	344	2.7	337	84	5	1140	30	18	23	27	1.98
213358--213436	39	2.1	38	85	4	106	39	5	12	43	1.65
244980--245043	33	1.9	34	93	3	112	59	4	3	32	1.34
245265--245291	13	2.1	13	100	0	54	48	7	7	37	1.59
247715--247786	26	3.0	25	82	9	73	52	1	0	45	1.09
255124--255153	2	15.0	2	100	0	60	50	0	0	50	1.00
262191--262215	13	1.9	13	100	0	50	16	0	0	84	0.63
262192--262221	12	2.6	11	90	10	51	13	0	0	86	0.57
263923--263947	1	25.0	1	100	0	50	0	0	0	100	0.00
266414--266461	23	2.0	24	84	11	64	54	8	12	25	1.65
270892--270956	35	2.0	34	82	17	84	16	15	6	61	1.53
270976--271005	3	10.0	3	100	0	60	33	0	0	66	0.92

Tables:   1

The End!