genome.fa.s15185.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015185.1 Kokia drynarioides strain JFW-HI SEQ_130229, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  201118

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
741--878	71	1.9	71	98	0	267	32	12	21	34	1.90
1215--1270	27	2.1	27	86	0	76	25	1	1	71	1.05
1282--1351	22	3.2	20	76	11	59	40	8	21	30	1.83
1849--1879	3	10.3	3	100	0	62	32	0	0	67	0.91
3308--3335	3	9.3	3	100	0	56	0	35	0	64	0.94
7667--7706	21	1.9	21	85	10	55	65	5	17	12	1.44
11017--11087	9	7.8	9	76	19	67	64	1	0	33	1.02
12598--12920	59	5.5	58	78	8	289	31	5	30	32	1.80
12569--12919	30	11.9	30	70	9	145	31	5	30	32	1.80
12556--12924	29	12.6	30	71	16	220	31	5	30	32	1.81
14662--14716	17	3.2	17	82	10	76	54	3	0	41	1.18
15897--15932	2	18.0	2	100	0	72	50	0	0	50	1.00
16335--16383	15	3.2	15	75	16	55	46	12	16	24	1.81
16623--16660	17	2.2	18	85	4	51	52	2	0	44	1.14
17124--17150	2	13.5	2	100	0	54	48	0	0	51	1.00
21353--21396	22	2.0	21	91	4	70	34	0	0	65	0.93
21344--21402	16	3.7	16	75	20	52	32	0	0	67	0.91
24307--24370	16	3.7	18	69	26	57	37	3	1	57	1.24
25690--25763	21	3.2	21	66	23	58	43	28	4	24	1.72
25666--25811	49	3.0	49	94	0	247	45	25	6	22	1.77
25698--25776	24	3.2	24	67	22	74	48	26	5	20	1.70
27457--27497	21	2.0	21	100	0	82	9	29	34	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28457--28888	29	14.7	30	73	15	311	37	30	2	29	1.71
28474--28895	30	14.4	28	77	11	366	36	31	2	29	1.70
28457--28897	59	7.5	59	87	2	602	37	30	2	29	1.70
29886--29915	12	2.5	12	94	0	51	63	10	0	26	1.26
29891--29936	20	2.3	20	80	0	56	52	6	0	41	1.27
29964--30000	19	1.9	19	88	0	56	64	0	2	32	1.07
29967--30019	18	2.9	19	77	8	56	60	0	1	37	1.08
31693--31776	32	2.6	31	81	5	96	53	15	8	22	1.68
35481--35577	49	2.0	49	89	0	149	45	24	7	22	1.78
37223--37263	21	2.0	21	100	0	82	9	29	34	26	1.88
38223--38654	29	14.7	30	73	15	311	37	30	2	29	1.71
38240--38661	30	14.4	28	77	11	366	36	31	2	29	1.70
38223--38663	59	7.5	59	87	2	602	37	30	2	29	1.70
39652--39681	12	2.5	12	94	0	51	63	10	0	26	1.26
39657--39702	20	2.3	20	80	0	56	52	6	0	41	1.27
39730--39766	19	1.9	19	88	0	56	64	0	2	32	1.07
39733--39785	18	2.9	19	77	8	56	60	0	1	37	1.08
41459--41542	32	2.6	31	81	5	96	53	15	8	22	1.68
53053--53095	18	2.4	18	80	0	50	4	27	41	25	1.75
53048--53086	12	3.3	12	92	3	62	7	25	41	25	1.82
53125--53149	6	4.2	6	100	0	50	16	16	52	16	1.76
61985--62043	28	2.1	27	84	3	73	35	6	1	55	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63230--63327	24	4.1	24	85	2	135	28	25	29	16	1.97
69396--69913	241	2.1	241	85	2	682	38	13	14	34	1.85
70481--70535	21	2.5	22	80	11	60	47	18	1	32	1.59
71601--71673	30	2.4	32	84	8	91	36	12	5	45	1.65
71615--71673	32	1.9	30	89	6	91	35	13	3	47	1.60
76585--77196	188	3.2	188	86	2	796	30	15	17	36	1.91
82893--82929	17	2.2	17	95	0	65	32	13	27	27	1.94
83209--83252	17	2.5	18	88	3	63	45	2	2	50	1.27
93074--93170	48	2.0	48	93	0	167	41	13	11	34	1.80
103495--103530	6	5.8	6	96	3	63	16	69	13	0	1.19
111290--111327	12	3.2	12	88	0	58	7	36	13	42	1.73
111531--111569	6	6.3	6	84	3	51	61	17	17	2	1.46
115976--116027	24	2.2	23	83	10	61	67	0	3	28	1.08
117750--117853	55	1.9	55	80	4	120	32	5	5	55	1.47
122177--122258	17	4.7	17	75	15	78	52	3	3	40	1.37
122156--122279	6	21.0	6	69	12	78	50	2	4	42	1.37
122203--122293	41	2.2	41	82	1	121	56	3	4	36	1.36
122421--122466	24	1.9	24	82	8	58	39	4	0	56	1.19
124365--124712	166	2.1	165	86	1	473	24	10	20	44	1.83
129990--130029	21	1.9	22	90	10	66	37	0	5	57	1.21
131794--131971	88	2.0	88	100	0	356	26	23	21	29	1.99
138552--138722	23	7.4	22	78	11	146	41	21	25	12	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138577--138722	46	3.2	44	84	7	175	42	21	23	12	1.87
147026--147401	29	12.8	29	77	9	325	33	3	27	35	1.73
147026--147401	59	6.4	58	81	9	336	33	3	27	35	1.73
148408--148477	3	23.0	3	75	8	61	40	1	1	57	1.17
149190--149269	17	4.6	17	79	1	88	51	3	2	42	1.33
156995--157031	5	7.4	5	100	0	74	81	0	18	0	0.70
161039--161063	6	4.2	6	100	0	50	68	0	0	32	0.90
163425--163478	15	3.3	16	76	10	56	35	0	7	57	1.27
167975--168007	12	2.5	13	85	14	50	66	0	0	33	0.92
168438--168463	5	5.2	5	100	0	52	19	0	0	80	0.71
174044--174087	2	22.0	2	100	0	88	50	0	0	50	1.00
175103--175169	15	4.7	14	90	5	75	8	4	52	34	1.53
175115--175169	15	3.7	15	97	0	101	10	5	49	34	1.61
175100--175124	3	8.3	3	100	0	50	0	0	68	32	0.90
176448--176495	16	3.0	17	72	22	50	64	0	0	35	0.94
177873--178097	18	12.5	18	79	0	225	51	29	15	4	1.63
177879--178097	54	4.1	54	86	1	269	51	29	15	4	1.61
187116--187184	30	2.3	30	85	5	86	49	7	2	40	1.45
188134--188257	31	4.2	29	72	20	105	44	8	21	25	1.80
193693--193762	29	2.3	29	85	4	86	34	8	15	41	1.78
193714--193772	29	2.0	30	93	3	102	30	6	15	47	1.71
193718--193781	29	2.2	29	86	8	85	32	9	12	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198180--198209	15	2.0	15	93	0	51	20	13	10	56	1.65

Tables:   1

The End!