genome.fa.s15187.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015187.1 Kokia drynarioides strain JFW-HI SEQ_130231, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  325226

Tables:   1   

This is table  1  of  1  ( 114 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--48	17	2.5	18	85	7	63	54	2	0	43	1.12
301--340	21	1.9	21	85	10	55	30	20	20	30	1.97
890--1085	42	4.6	42	92	0	293	28	27	11	32	1.92
6535--6570	16	2.2	16	90	0	54	30	19	2	47	1.64
11289--11329	11	3.7	11	93	0	64	4	21	4	68	1.28
26615--26674	29	2.1	29	96	0	111	26	33	6	33	1.83
31209--31463	28	9.1	28	81	7	152	43	21	12	21	1.86
31385--31486	29	3.6	29	85	1	134	47	21	8	22	1.78
39919--40015	40	2.5	40	88	3	135	15	17	29	37	1.91
39957--40079	62	2.0	63	91	3	203	13	14	32	39	1.84
40019--40138	40	3.0	40	80	2	132	15	16	31	36	1.90
39919--40102	102	1.8	102	87	2	280	13	16	31	38	1.88
45138--45192	20	2.8	21	81	10	64	50	0	38	10	1.37
48905--48976	24	2.9	25	79	8	85	18	27	19	34	1.95
54002--54037	6	6.0	6	96	0	63	2	50	0	47	1.15
55498--55540	16	2.8	17	80	20	58	34	0	6	58	1.25
57786--57844	20	2.8	20	85	10	75	66	5	3	25	1.28
64551--64592	4	10.5	4	100	0	84	0	23	0	76	0.79
66467--66547	41	2.0	41	92	0	135	33	18	9	38	1.84
69093--69312	59	3.7	59	85	5	273	37	1	25	35	1.65
69093--69312	30	7.4	29	87	4	269	37	1	25	35	1.65
69315--69358	22	2.0	22	91	8	72	40	0	22	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69337--69393	30	1.9	30	85	7	80	45	3	19	31	1.67
69335--69402	30	2.3	30	76	5	75	41	2	19	36	1.66
70193--70266	2	37.0	2	90	0	103	45	1	5	47	1.34
71220--71673	39	11.7	39	73	9	255	25	18	29	26	1.98
71220--71557	78	4.4	77	79	6	324	25	18	30	26	1.98
71215--71557	117	2.9	114	80	9	327	25	18	30	26	1.98
71421--71637	77	2.8	77	84	8	212	25	17	30	26	1.97
71490--71871	78	4.9	78	80	4	319	25	18	28	26	1.98
83813--84074	59	4.4	59	80	8	264	39	0	24	35	1.61
83818--84087	30	9.1	29	76	9	231	39	1	24	34	1.63
85517--85556	20	2.0	20	95	0	71	52	17	0	30	1.45
89540--89585	21	2.1	22	84	15	60	23	28	2	45	1.65
96991--97034	22	2.0	22	95	0	79	38	18	9	34	1.82
98183--98256	20	3.2	24	63	26	61	54	12	6	27	1.62
98169--98259	43	2.1	43	97	0	173	54	12	6	26	1.61
98881--98913	17	1.9	17	88	11	50	54	3	0	42	1.15
98939--99036	51	1.9	52	87	2	144	38	3	8	50	1.48
99113--99158	24	1.9	24	90	0	74	73	2	0	23	0.94
99116--99166	24	2.1	24	85	3	66	72	1	0	25	0.95
103956--104009	28	2.0	27	85	10	74	50	1	0	48	1.11
103953--104000	21	2.3	20	82	10	60	50	2	0	47	1.12
112862--112894	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113426--113619	90	2.1	90	84	6	250	46	11	16	25	1.80
121917--121967	21	2.5	20	75	15	50	62	1	1	33	1.17
129057--129095	18	2.2	18	86	9	53	46	2	2	48	1.29
129996--130045	25	2.0	25	100	0	100	52	4	24	20	1.63
133051--133104	6	9.0	6	85	0	63	5	11	31	51	1.60
134943--135014	20	3.6	21	73	16	64	66	1	4	27	1.18
134968--135014	20	2.3	20	86	13	78	68	0	4	27	1.08
158083--158168	27	3.2	26	78	1	82	19	17	31	31	1.95
158656--158697	21	2.0	21	90	0	66	28	7	19	45	1.76
159211--159260	18	2.8	17	82	8	55	24	12	24	40	1.88
170089--170142	29	1.9	29	88	7	85	24	7	27	40	1.81
170639--170681	19	2.2	19	84	12	52	18	2	18	60	1.47
172563--172601	17	2.3	17	86	0	51	56	0	7	35	1.28
172573--172611	17	2.3	18	82	13	55	56	0	15	28	1.40
173835--173862	6	4.7	6	100	0	56	32	0	14	53	1.41
174887--174920	5	6.8	5	100	0	68	61	17	0	20	1.34
177446--177515	6	12.2	6	72	14	58	47	0	1	51	1.09
177445--177505	17	3.5	17	88	2	77	47	0	1	50	1.10
177460--177518	17	2.8	22	66	28	56	44	0	1	54	1.10
179324--179837	29	17.6	30	69	16	176	36	21	5	36	1.77
179354--179841	59	8.4	59	77	9	416	36	21	5	36	1.77
179354--179841	118	4.2	117	76	11	466	36	21	5	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179673--179871	30	6.7	29	68	17	99	36	23	4	35	1.74
180121--180314	97	2.0	97	86	4	275	29	17	13	39	1.87
194555--194615	20	3.0	20	87	2	86	55	1	1	40	1.19
195029--195063	2	18.5	2	88	11	56	48	0	0	51	1.00
195190--195247	27	2.2	25	82	14	64	50	1	20	27	1.58
195437--195503	33	2.1	33	91	2	109	41	26	0	31	1.56
215956--216052	30	3.2	30	91	7	144	23	14	18	43	1.87
222678--222738	28	2.1	30	82	11	74	34	1	4	59	1.29
235167--235254	33	2.5	35	85	5	117	51	21	10	17	1.74
238316--238377	27	2.4	26	81	7	74	25	12	29	32	1.93
241612--241655	13	3.7	12	79	11	54	65	4	0	29	1.12
241612--241659	12	4.0	12	77	20	55	66	4	0	29	1.10
245774--245819	22	2.1	21	84	11	58	28	2	6	63	1.31
245781--245820	20	1.9	22	85	10	57	32	2	7	57	1.40
251342--251366	2	12.5	2	100	0	50	48	0	0	52	1.00
255390--255425	17	2.1	17	89	0	54	44	0	44	11	1.39
256957--257009	20	2.7	20	81	0	70	13	22	24	39	1.90
261471--261511	20	2.0	21	90	4	66	9	26	26	36	1.88
261497--261535	20	2.0	20	89	0	60	17	23	25	33	1.96
262242--262283	22	1.9	22	85	0	57	47	4	2	45	1.36
262261--262304	19	2.2	20	84	4	54	50	4	2	43	1.35
264806--264833	8	3.5	8	100	0	56	89	0	10	0	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266574--266671	47	2.1	47	100	0	196	35	20	8	35	1.82
276211--276249	11	3.4	11	80	13	51	12	0	15	71	1.14
279389--279436	18	2.6	17	78	12	51	62	2	0	35	1.07
279451--279509	10	6.0	10	74	16	52	54	3	1	40	1.27
279474--279508	18	1.9	18	94	0	61	51	2	0	45	1.16
279606--279636	16	1.9	16	93	0	53	35	6	9	48	1.62
281710--281745	17	2.2	16	90	9	56	30	0	0	69	0.89
282352--282405	25	2.2	25	86	6	74	51	20	16	11	1.74
291375--291405	14	2.2	14	94	0	53	22	0	29	48	1.51
292177--292266	22	4.2	21	76	10	67	7	5	17	68	1.33
292196--292269	22	3.5	22	83	3	89	8	2	17	71	1.22
292245--292293	24	2.0	25	84	8	64	8	6	20	65	1.41
292275--292340	35	1.9	35	85	11	93	10	6	18	65	1.44
292257--292342	44	2.0	44	81	4	102	10	5	19	63	1.45
292314--292353	20	2.0	21	90	5	64	10	5	25	60	1.49
292465--292548	38	2.2	38	79	12	91	27	0	7	65	1.18
294608--294648	20	2.0	20	100	0	82	53	4	0	41	1.22
302891--302958	28	2.4	28	97	0	127	27	20	0	51	1.48
302887--302962	28	2.5	31	83	14	113	30	18	0	51	1.47
304239--304287	25	2.0	25	100	0	98	32	14	16	36	1.89
304883--304947	31	2.1	31	97	0	121	46	7	21	24	1.77
306153--306187	2	17.5	2	93	0	61	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317020--317070	15	3.5	15	72	5	50	37	3	0	58	1.16
321395--321452	2	29.0	2	89	6	91	50	1	0	48	1.11
321802--321864	19	3.3	19	68	12	56	25	9	22	42	1.83
321792--321866	39	1.9	39	94	0	132	28	9	22	40	1.85

Tables:   1

The End!