Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015190.1 Kokia drynarioides strain JFW-HI SEQ_130234, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 593296
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 12 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:471259 original size:30 final size:26
Alignment explanation
Indices: 471195--471258 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
471185 AGCAATTTCA
471195 ATCATTCATTCAAAAATAGCAGACTT
1 ATCATTCATTCAAAAATAGCAGACTT
*
471221 ATCATTCATTCAAAAATAGCAGACTC
1 ATCATTCATTCAAAAATAGCAGACTT
471247 ATCATTCATTCA
1 ATCATTCATTCA
471259 TATTCATCCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATTCATTCAAAAATAGCAGACTT
Found at i:476341 original size:13 final size:13
Alignment explanation
Indices: 476325--476350 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
476315 TCATATATAA
476325 TAAAAATCAAACC
1 TAAAAATCAAACC
476338 TAAAAATCAAACC
1 TAAAAATCAAACC
476351 CAATATGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (13 bp):
TAAAAATCAAACC
Found at i:477093 original size:12 final size:12
Alignment explanation
Indices: 477076--477117 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
477066 TATCTTCTTG
477076 TTTTTCATTTTC
1 TTTTTCATTTTC
*
477088 TTTTTC-TTCTTG
1 TTTTTCATT-TTC
477100 TTTTTCATTTTC
1 TTTTTCATTTTC
477112 TTTTTC
1 TTTTTC
477118 CTCTTGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 2 0.08
12 22 0.85
13 2 0.08
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (12 bp):
TTTTTCATTTTC
Found at i:477100 original size:24 final size:24
Alignment explanation
Indices: 477068--477123 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
477058 TGTATGGGTA
477068 TCTTCTTGTTTTTCATTTTCTTTT
1 TCTTCTTGTTTTTCATTTTCTTTT
477092 TCTTCTTGTTTTTCATTTTCTTTT
1 TCTTCTTGTTTTTCATTTTCTTTT
*
477116 TCCTCTTG
1 TCTTCTTG
477124 AGAACTCTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.04, C:0.20, G:0.05, T:0.71
Consensus pattern (24 bp):
TCTTCTTGTTTTTCATTTTCTTTT
Found at i:482384 original size:16 final size:16
Alignment explanation
Indices: 482364--482397 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 16
482354 TTTTTTTGTT
482364 TTTTTCTTTTTCTCGTA
1 TTTTTCTTTTTCTC-TA
482381 TTTTTCTTTTTTCTCTA
1 TTTTTC-TTTTTCTCTA
482398 CTTTCTTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.06, C:0.18, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTTCTTTTTCTCTA
Found at i:488535 original size:28 final size:28
Alignment explanation
Indices: 488495--488555 Score: 122
Period size: 28 Copynumber: 2.2 Consensus size: 28
488485 CGATTAGATC
488495 TAAGAATAATCAGATAAAAAGCATTAAA
1 TAAGAATAATCAGATAAAAAGCATTAAA
488523 TAAGAATAATCAGATAAAAAGCATTAAA
1 TAAGAATAATCAGATAAAAAGCATTAAA
488551 TAAGA
1 TAAGA
488556 GTCAAAGTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.61, C:0.07, G:0.11, T:0.21
Consensus pattern (28 bp):
TAAGAATAATCAGATAAAAAGCATTAAA
Found at i:504258 original size:20 final size:20
Alignment explanation
Indices: 504235--504278 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
504225 TTGATTAATG
*
504235 TTTGCTATTTTTTACCAATA
1 TTTGCTATTTTTGACCAATA
*
504255 TTTGCTATTTTTGACCAATG
1 TTTGCTATTTTTGACCAATA
504275 TTTG
1 TTTG
504279 TAATCTTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.20, C:0.14, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTGCTATTTTTGACCAATA
Found at i:506999 original size:15 final size:15
Alignment explanation
Indices: 506981--507018 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
506971 TATTGTCCCT
506981 TTATTTATTTGTT-TG
1 TTATTTATTT-TTATG
506996 TTATTTATTTTTATG
1 TTATTTATTTTTATG
507011 TTATTTAT
1 TTATTTAT
507019 ATTCCCGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 2 0.09
15 20 0.91
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (15 bp):
TTATTTATTTTTATG
Found at i:507089 original size:22 final size:22
Alignment explanation
Indices: 507036--507090 Score: 56
Period size: 26 Copynumber: 2.3 Consensus size: 22
507026 TTTTTATTTA
*
507036 ATTTTATTTCTTTATTGTTTTT
1 ATTTTATTTATTTATTGTTTTT
*
507058 ATGTGCTTTATTTATTTGTTGTTTTT
1 A--T--TTTATTTATTTATTGTTTTT
507084 ATTTTAT
1 ATTTTAT
507091 GTTTCTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
22 6 0.22
24 2 0.07
26 19 0.70
ACGTcount: A:0.15, C:0.04, G:0.09, T:0.73
Consensus pattern (22 bp):
ATTTTATTTATTTATTGTTTTT
Found at i:507309 original size:21 final size:21
Alignment explanation
Indices: 507285--507341 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
507275 ATTGCCATGA
* *
507285 TTATTATTGTTATTTTGTTTG
1 TTATCATTGTTATTTTATTTG
* *
507306 TTATCATTATTTTTTTATTTG
1 TTATCATTGTTATTTTATTTG
507327 -TATCATTTGTTATTT
1 TTATCA-TTGTTATTT
507342 ATTGTATATA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
20 5 0.17
21 24 0.83
ACGTcount: A:0.18, C:0.04, G:0.09, T:0.70
Consensus pattern (21 bp):
TTATCATTGTTATTTTATTTG
Found at i:507342 original size:20 final size:20
Alignment explanation
Indices: 507291--507348 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
507281 ATGATTATTA
*
507291 TTGTTATTTTGTTTGTTATCAT
1 TTGTTA-TTTATTTG-TATCAT
*
507313 TAT-TTTTTTATTTGTATCAT
1 T-TGTTATTTATTTGTATCAT
507333 TTGTTATTTA-TTGTAT
1 TTGTTATTTATTTGTAT
507349 ATATTTGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
19 7 0.23
20 13 0.42
21 7 0.23
22 3 0.10
23 1 0.03
ACGTcount: A:0.17, C:0.03, G:0.10, T:0.69
Consensus pattern (20 bp):
TTGTTATTTATTTGTATCAT
Found at i:509764 original size:13 final size:12
Alignment explanation
Indices: 509729--509776 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 12
509719 AAAGCTCGTA
509729 AAAACATAATTTAT
1 AAAACAT-ATTT-T
509743 AAAAGCATATTTT
1 AAAA-CATATTTT
*
509756 AAAATCATATCTT
1 AAAA-CATATTTT
509769 AAAACATA
1 AAAACATA
509777 GGCTCGCTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 4 0.13
13 16 0.52
14 8 0.26
15 3 0.10
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.33
Consensus pattern (12 bp):
AAAACATATTTT
Found at i:510439 original size:27 final size:27
Alignment explanation
Indices: 510376--510439 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
510366 CTTGACTTTG
*
510376 ACTAGTGAACAATAGCTCACCAAACAG
1 ACTAGTGAACAATAGCTCACCAAACAC
* * * *
510403 ACTGGCGAACACTAGCTCGCCAAACAC
1 ACTAGTGAACAATAGCTCACCAAACAC
510430 ACTAGTGAAC
1 ACTAGTGAAC
510440 CCAATTGGAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.30, G:0.17, T:0.14
Consensus pattern (27 bp):
ACTAGTGAACAATAGCTCACCAAACAC
Found at i:511494 original size:131 final size:132
Alignment explanation
Indices: 511259--511523 Score: 478
Period size: 131 Copynumber: 2.0 Consensus size: 132
511249 ATAATTTCGC
*
511259 ATAACAATAAAAATCAAGAAGGTTAAGATTATTATGAAAAAATTCATTGTTAAAGGTCAATATAG
1 ATAACAATAAAAATCAAGAAGGTTAAAATTATTATGAAAAAATTCATTGTTAAAGGTCAATATAG
* *
511324 AAAATTTTGTTGTAAGTGCAAATGTATAAAATGCTTTAATAAACCTATCTACTGCAACAAAATTA
66 AAAATTTTGTTGCAAGTGAAAATGTATAAAATGCTTTAATAAACCTATCTACTGCAACAAAATTA
511389 TT
131 TT
*
511391 ATAACAATAAAAATCAAGTAGGTTAAAATTATTATG-AAAAATTCATTGTTAAAGGTCAATATAG
1 ATAACAATAAAAATCAAGAAGGTTAAAATTATTATGAAAAAATTCATTGTTAAAGGTCAATATAG
*
511455 AAAATTTTGTTGCAAGTGAAAATGTATAAAATGCTTTAATAAACCTATCTAGTGCAACAAAATTA
66 AAAATTTTGTTGCAAGTGAAAATGTATAAAATGCTTTAATAAACCTATCTACTGCAACAAAATTA
511520 TT
131 TT
511522 AT
1 AT
511524 TTTTAACCTT
Statistics
Matches: 128, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
131 94 0.73
132 34 0.27
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.33
Consensus pattern (132 bp):
ATAACAATAAAAATCAAGAAGGTTAAAATTATTATGAAAAAATTCATTGTTAAAGGTCAATATAG
AAAATTTTGTTGCAAGTGAAAATGTATAAAATGCTTTAATAAACCTATCTACTGCAACAAAATTA
TT
Found at i:511926 original size:42 final size:42
Alignment explanation
Indices: 511879--511963 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
511869 AATTAATCGA
* **
511879 ATTTTCTATTTTCTTTTTAGTTGAAATTTCTCGTATATTCTT
1 ATTTTCTATTTTCTTTCTAGTTGAAATACCTCGTATATTCTT
*
511921 ATTTTCTATTTTCTTTCTAGTTGAAATACCTTGTATATTCTT
1 ATTTTCTATTTTCTTTCTAGTTGAAATACCTCGTATATTCTT
511963 A
1 A
511964 ATATATGTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.21, C:0.13, G:0.07, T:0.59
Consensus pattern (42 bp):
ATTTTCTATTTTCTTTCTAGTTGAAATACCTCGTATATTCTT
Found at i:512433 original size:27 final size:26
Alignment explanation
Indices: 512375--512433 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 26
512365 TTGTAATTTA
512375 TTATTTTCTTAGTACTTTCTTATAAT
1 TTATTTTCTTAGTACTTTCTTATAAT
*
512401 TATATTTTCTT-GATACTTTCTTTGTAAT
1 T-TATTTTCTTAG-TACTTTC-TTATAAT
512429 TTATT
1 TTATT
512434 ATATTTTAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 2 0.07
27 20 0.69
28 7 0.24
ACGTcount: A:0.22, C:0.10, G:0.05, T:0.63
Consensus pattern (26 bp):
TTATTTTCTTAGTACTTTCTTATAAT
Found at i:519891 original size:16 final size:16
Alignment explanation
Indices: 519865--519903 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
519855 AGTTTATGTG
519865 ATTTTTT-AAATAATT
1 ATTTTTTAAAATAATT
*
519880 ATTTTTTAAAATATTT
1 ATTTTTTAAAATAATT
519896 ATTTTTTA
1 ATTTTTTA
519904 GAATTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATTTTTTAAAATAATT
Found at i:520596 original size:16 final size:17
Alignment explanation
Indices: 520575--520606 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
520565 ATGTTCTCAG
520575 TTTATA-TTTATCATGA
1 TTTATATTTTATCATGA
520591 TTTATATTTTATCATG
1 TTTATATTTTATCATG
520607 TATGGATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.59
Consensus pattern (17 bp):
TTTATATTTTATCATGA
Found at i:521262 original size:23 final size:24
Alignment explanation
Indices: 521231--521295 Score: 87
Period size: 23 Copynumber: 2.8 Consensus size: 24
521221 TTCATTCAAC
*
521231 TTAATCGAACATGTTGACGAACAT
1 TTAATCGAACATGTTCACGAACAT
*
521255 TTAA-CGAACATGTTCATGAACAT
1 TTAATCGAACATGTTCACGAACAT
* *
521278 ATAATTGAACATGTTCAC
1 TTAATCGAACATGTTCAC
521296 AAATAATGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 20 0.57
24 15 0.43
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (24 bp):
TTAATCGAACATGTTCACGAACAT
Found at i:521277 original size:12 final size:12
Alignment explanation
Indices: 521231--521268 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
521221 TTCATTCAAC
521231 TTAATCGAACATG
1 TTAA-CGAACATG
*
521244 TTGACGAACAT-
1 TTAACGAACATG
521255 TTAACGAACATG
1 TTAACGAACATG
521267 TT
1 TT
521269 CATGAACATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 10 0.45
12 9 0.41
13 3 0.14
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (12 bp):
TTAACGAACATG
Found at i:523793 original size:22 final size:22
Alignment explanation
Indices: 523751--523793 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
523741 AGGTTGGATT
*
523751 AATTCATAATATAATTAAGTAA
1 AATTCATAATATAATAAAGTAA
*
523773 AATTCTTAA-ATAATAATAGTA
1 AATTCATAATATAATAA-AGTA
523794 TGAATAGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (22 bp):
AATTCATAATATAATAAAGTAA
Found at i:525256 original size:19 final size:19
Alignment explanation
Indices: 525232--525281 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
525222 CCTATAAAAT
525232 CCCTTAAAGGGTAATTATA
1 CCCTTAAAGGGTAATTATA
525251 CCCTTAAAGGGTAATTATA
1 CCCTTAAAGGGTAATTATA
*
525270 CCCTTAAGGGGT
1 CCCTTAAAGGGT
525282 GTAGTGGACG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (19 bp):
CCCTTAAAGGGTAATTATA
Found at i:526460 original size:28 final size:28
Alignment explanation
Indices: 526422--526486 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
526412 AAATGAGCAT
*
526422 CATGACCTTTGGGTTAACAAGGAGTAAG
1 CATGACCTTTGGGTCAACAAGGAGTAAG
* *
526450 CATGACCTTTGGGTCAACAGGGAGTAAT
1 CATGACCTTTGGGTCAACAAGGAGTAAG
526478 CATGACCTT
1 CATGACCTT
526487 CGAATATCGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (28 bp):
CATGACCTTTGGGTCAACAAGGAGTAAG
Found at i:534025 original size:36 final size:36
Alignment explanation
Indices: 533985--534067 Score: 141
Period size: 36 Copynumber: 2.3 Consensus size: 36
533975 GCTTTGATAA
533985 CGGCGTCGTTTTGGAAA-GGTGTTTTAACACCAAAAT
1 CGGCGTCGTTTT-GAAAGGGTGTTTTAACACCAAAAT
*
534021 CGGCGTCGTTTTGAAAGGGTGTTTTAACACCCAAAT
1 CGGCGTCGTTTTGAAAGGGTGTTTTAACACCAAAAT
534057 CGGCGTCGTTT
1 CGGCGTCGTTT
534068 ACACACCATA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
35 4 0.09
36 41 0.91
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (36 bp):
CGGCGTCGTTTTGAAAGGGTGTTTTAACACCAAAAT
Found at i:534483 original size:29 final size:30
Alignment explanation
Indices: 534417--534573 Score: 194
Period size: 30 Copynumber: 5.3 Consensus size: 30
534407 CCTAAACCTT
534417 AAACTTTCTAAAAATTGCATTTTAGCCCTC
1 AAACTTTCTAAAAATTGCATTTTAGCCCTC
534447 AAACTTTCTAAAAATTGCATTTTAG-CCTC
1 AAACTTTCTAAAAATTGCATTTTAGCCCTC
* * *
534476 GAATTTTCTAAAAATTGCATTTTAGCCCTT
1 AAACTTTCTAAAAATTGCATTTTAGCCCTC
* *
534506 AAACTTTCTAAAAATTTCA-TTTAGACCCTT
1 AAACTTTCTAAAAATTGCATTTTAG-CCCTC
* * *
534536 AAACTTTTTGAAAAATTACATTTT-GACCTC
1 AAACTTTCT-AAAAATTGCATTTTAGCCCTC
*
534566 AATCTTTC
1 AAACTTTC
534574 CAAATTTTCA
Statistics
Matches: 111, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
29 32 0.29
30 66 0.59
31 10 0.09
32 3 0.03
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.40
Consensus pattern (30 bp):
AAACTTTCTAAAAATTGCATTTTAGCCCTC
Found at i:536352 original size:21 final size:21
Alignment explanation
Indices: 536328--536377 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
536318 CGAAAAATGA
536328 TTAATTAAG-GTCTTAAAAATT
1 TTAATTAAGAGT-TTAAAAATT
* *
536349 TTAATTATGAGTTTAAATATT
1 TTAATTAAGAGTTTAAAAATT
536370 TTAATTAA
1 TTAATTAA
536378 ATATGTTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 23 0.92
22 2 0.08
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (21 bp):
TTAATTAAGAGTTTAAAAATT
Found at i:537973 original size:80 final size:80
Alignment explanation
Indices: 537828--537979 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
537818 GCGCAAAATC
* *
537828 GTTAGTTAATCCAACTAGAGCTGAGCTCACTTAATGCAGTTTATCCACCAGGCACTAGGTACCAT
1 GTTAGTTAATCCAACTAGAGCTGAGCTCACTTAATGCAGTTTATCCACCAAGCACCAGGTACCAT
537893 GAATTGACGGATTTT
66 GAATTGACGGATTTT
* * * *
537908 GTTAGTTAATCCAACTAGAGCTGGGCTCACTT-ATCGC-GATTTATCCACTAAGCACCGGGTTCC
1 GTTAGTTAATCCAACTAGAGCTGAGCTCACTTAAT-GCAG-TTTATCCACCAAGCACCAGGTACC
537971 ATGAATTGA
64 ATGAATTGA
537980 TGGAAATGGT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
79 3 0.05
80 61 0.95
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (80 bp):
GTTAGTTAATCCAACTAGAGCTGAGCTCACTTAATGCAGTTTATCCACCAAGCACCAGGTACCAT
GAATTGACGGATTTT
Found at i:539029 original size:12 final size:12
Alignment explanation
Indices: 538998--539029 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
538988 CTTTGAGTAG
*
538998 GGACACGACCTA
1 GGACACGGCCTA
539010 GGACACGGCCTA
1 GGACACGGCCTA
539022 GGACACGG
1 GGACACGG
539030 TCAGGGACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.28, C:0.31, G:0.34, T:0.06
Consensus pattern (12 bp):
GGACACGGCCTA
Found at i:540418 original size:21 final size:21
Alignment explanation
Indices: 540378--540437 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
540368 GACTGTACAG
* **
540378 ATTTCTACCGATACTTGTGCTA
1 ATTTCTACTGATACAAGTGC-A
*
540400 GTTT-TACTGATACAAGTGCA
1 ATTTCTACTGATACAAGTGCA
*
540420 ATTTCTACTGATGCAAGT
1 ATTTCTACTGATACAAGT
540438 CATGCATCTA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 4 0.13
21 24 0.77
22 3 0.10
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (21 bp):
ATTTCTACTGATACAAGTGCA
Found at i:554877 original size:31 final size:30
Alignment explanation
Indices: 554815--554877 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
554805 TCCCAAAAAA
* * * * *
554815 TTTAAGTACCAACTTAAAAAAAGTGTTAAG
1 TTTAAATACCAAATTAAAAAAAATATCAAG
554845 TTTAAATACCAAATTAGAAAAAAATATCAAG
1 TTTAAATACCAAATTA-AAAAAAATATCAAG
554876 TT
1 TT
554878 CAAGTATTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 14 0.52
31 13 0.48
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.30
Consensus pattern (30 bp):
TTTAAATACCAAATTAAAAAAAATATCAAG
Found at i:555163 original size:60 final size:59
Alignment explanation
Indices: 555073--555184 Score: 152
Period size: 60 Copynumber: 1.9 Consensus size: 59
555063 TATAATAATA
* * * *
555073 TATGTATAGATATCATATCGTATTTTTAGTTGTACTATTATGATTAGAAAATAACAGTT
1 TATGTATAGATATCATATCATAATTATAGTTGTACTATTATGATTAAAAAATAACAGTT
* * *
555132 TATGTATAATATATTATATCATAATTATAGTTGTACTATTTTGATTAAAAAAT
1 TATGTAT-AGATATCATATCATAATTATAGTTGTACTATTATGATTAAAAAAT
555185 GTGTTATAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
59 7 0.16
60 38 0.84
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (59 bp):
TATGTATAGATATCATATCATAATTATAGTTGTACTATTATGATTAAAAAATAACAGTT
Found at i:558433 original size:12 final size:12
Alignment explanation
Indices: 558418--558442 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
558408 TAATTATATG
558418 TTATTTTATTAA
1 TTATTTTATTAA
558430 TTATTTTATTAA
1 TTATTTTATTAA
558442 T
1 T
558443 CTCGCTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATTTTATTAA
Found at i:564750 original size:18 final size:20
Alignment explanation
Indices: 564721--564768 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
564711 GTACAATCAG
564721 AAAAATATATATTTTCTCAT
1 AAAAATATATATTTTCTCAT
564741 AAAAATATATATTTTCTCAT
1 AAAAATATATATTTTCTCAT
564761 AAAAATAT
1 AAAAATAT
564769 TCCAAGAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (20 bp):
AAAAATATATATTTTCTCAT
Found at i:565381 original size:22 final size:25
Alignment explanation
Indices: 565353--565401 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
565343 CAAACAATGT
565353 TAATAAATA-ATA-A-ACAAACAAA
1 TAATAAATACATATATACAAACAAA
*
565375 TAATAAATACATATATACACACAAA
1 TAATAAATACATATATACAAACAAA
565400 TA
1 TA
565402 TTATTTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 9 0.39
23 3 0.13
24 1 0.04
25 10 0.43
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.22
Consensus pattern (25 bp):
TAATAAATACATATATACAAACAAA
Found at i:571984 original size:31 final size:31
Alignment explanation
Indices: 571948--572010 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
571938 AAATTTAAAG
* **
571948 TCTAAAATTTCAAAACTAATATATCTAAATT
1 TCTAAAAATTCAAAAAAAATATATCTAAATT
571979 TCTAAAAATTCAAAAAAAATATATCTAAATT
1 TCTAAAAATTCAAAAAAAATATATCTAAATT
572010 T
1 T
572011 TGCATTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (31 bp):
TCTAAAAATTCAAAAAAAATATATCTAAATT
Found at i:574576 original size:20 final size:20
Alignment explanation
Indices: 574553--574592 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
574543 ATCAAAAAGT
*
574553 CGAGAAAAAAAAGAAAAATA
1 CGAGAAAAAAAAAAAAAATA
574573 CGAGAAAAAAAAAAAAAATA
1 CGAGAAAAAAAAAAAAAATA
574593 TTCTCTAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.78, C:0.05, G:0.12, T:0.05
Consensus pattern (20 bp):
CGAGAAAAAAAAAAAAAATA
Found at i:579250 original size:10 final size:10
Alignment explanation
Indices: 579233--579291 Score: 52
Period size: 10 Copynumber: 6.1 Consensus size: 10
579223 ATTGACTGAT
579233 TAATTAAATA
1 TAATTAAATA
* *
579243 TTATTAAAAA
1 TAATTAAATA
579253 TAATTAAATTA
1 TAATTAAA-TA
579264 TAA--AAATA
1 TAATTAAATA
* *
579272 AAAATAAA-A
1 TAATTAAATA
579281 TAATTAAATA
1 TAATTAAATA
579291 T
1 T
579292 TTTCGATTAG
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
8 4 0.11
9 10 0.26
10 20 0.53
11 4 0.11
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
TAATTAAATA
Found at i:579511 original size:22 final size:23
Alignment explanation
Indices: 579469--579514 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
579459 AGTTTTCTAT
579469 AACCCTTAATTTAAAATACCCTA
1 AACCCTTAATTTAAAATACCCTA
*
579492 AACCC-TAATTATCAAA-ACCCTA
1 AACCCTTAATT-TAAAATACCCTA
579514 A
1 A
579515 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (23 bp):
AACCCTTAATTTAAAATACCCTA
Found at i:579537 original size:37 final size:38
Alignment explanation
Indices: 579469--579545 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 38
579459 AGTTTTCTAT
* * *
579469 AACCCTTAATTTAAAATACCCTAAACCCTAATTATCAA
1 AACCCTTAATTTAAAAAACCCTAAACACTAATTACCAA
*
579507 AACCC-TAATTTTAAAAAACTCTAAA-ACTAATTACCAA
1 AACCCTTAA-TTTAAAAAACCCTAAACACTAATTACCAA
579544 AA
1 AA
579546 TAGTAAATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
37 15 0.44
38 19 0.56
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.27
Consensus pattern (38 bp):
AACCCTTAATTTAAAAAACCCTAAACACTAATTACCAA
Found at i:582764 original size:15 final size:17
Alignment explanation
Indices: 582731--582767 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
582721 ACTATAATGG
582731 AAAAAGAATGAAGAGTA
1 AAAAAGAATGAAGAGTA
*
582748 AAAAAG-ATGGAGA-TA
1 AAAAAGAATGAAGAGTA
582763 AAAAA
1 AAAAA
582768 CTAAACCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 7 0.37
16 6 0.32
17 6 0.32
ACGTcount: A:0.68, C:0.00, G:0.22, T:0.11
Consensus pattern (17 bp):
AAAAAGAATGAAGAGTA
Found at i:582984 original size:24 final size:24
Alignment explanation
Indices: 582939--582985 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
582929 GAATTTGACT
*
582939 GAAACAAATAAATAGAGCTTAATC
1 GAAACAAATAAATAGAACTTAATC
*
582963 GAAACAAATAAATAGAATTTAAT
1 GAAACAAATAAATAGAACTTAAT
582986 TGGAAGATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.57, C:0.09, G:0.11, T:0.23
Consensus pattern (24 bp):
GAAACAAATAAATAGAACTTAATC
Found at i:587328 original size:501 final size:498
Alignment explanation
Indices: 586368--587333 Score: 1229
Period size: 501 Copynumber: 1.9 Consensus size: 498
586358 AAAACAAAAA
* * *
586368 AAAATCATTAAGGCTCTATAATAACCAACTATAGCTCAAACGGGACATAGGAATGGTGGACCCGA
1 AAAATCATTAAGGCTCTACAACAACCAACTATAGCTCAAACGGGACATAGGAATGGTGGACCCAA
* * * * * * * *
586433 ATATCTTATCAGTGGAACAATGAGGTAGCCTTTCTGAAGGAGATAAAAGAATTGTAAATCTACCT
66 ATATCTTATCAGTGGAACAATAAGGCAACCTTCCTCAAGGAGATAAAAGAAGTGCAAATCCACCT
* * * ** * * * *
586498 TGGTCTCAAAGCCTTGTGTTCTCATACACAATTCAATTTGGTAGCTTAATCAATAAGAAAGAAAA
131 TGGTCCCAAAGCCCTATGTTCTCATACACAATTCAAACTCGTAGCTTAATAAATAAAAAACAAAA
* * * * * * * * *
586563 AAATAACTTAGATCAGTTCAACAAAACATATTATTTAAGCAAATATATAACCTAGACCTTGTCGA
196 AAACAACTTAGATCAGATCAAAAAAACACATTATTTAAGAAAAGATATAACCTAAACCTTGACAA
* *
586628 ATATACATCAACAAAAGAACTCAGAAAGGATAGTCATCCACTCAAGATGCAATGAGAAAGCAAAT
261 ATATACATCAACAAAAGAACTCAGAAAGGAGAGTCATCCACTCAAGATGCAATGAGAAAGCAAAC
* ** * * * **
586693 AGTAGAGTTACCAACTATGGAAACATGAGGCGGTTAAGCATGGTACCGACTAAGAGTAACTATAG
326 AATAGAGTTACCAACTATGGAAACATGAGGCGGTTAAGCATGACACCAACCAACAACAACTATAG
* ** * * *
586758 AGGAGGCTTTGAAACGACCCCCTTTTTATTTATTCCCTCCATTAACTAAGTGAAATTACTTGAAA
391 AGGAGGCCTTGAAACGACCCCCTTACTATTTATTCCCTCCAATAACTAAGTGAAATCACGTGAAA
586823 TTAAGGTTGAGGAGGGGAGGACAAACTAAAACTATAACTCAAC
456 TTAAGGTTGAGGAGGGGAGGACAAACTAAAACTATAACTCAAC
*
586866 AAAA-CATTAAGGCTCTACAACAACCAACTATAGCTCAAA-GAGGATATAGGAATGGTGGACCCA
1 AAAATCATTAAGGCTCTACAACAACCAACTATAGCTCAAACG-GGACATAGGAATGGTGGACCCA
* * * *
586929 AATATCTTATTAGTGGAGCAGTAAGGCAACCTTCCTCAAGGAGATTAAGAAGTAGTGCAAATCCA
65 AATATCTTATCAGTGGAACAATAAGGCAACCTTCCTCAAGGAGA-TAA-AAGAAGTGCAAATCCA
* * *
586994 CCTTTGTCCCAAAGCCCTATGTTCTTATACACGATTCAAACTCGTAGCTTAATAAATAAAAAACA
128 CCTTGGTCCCAAAGCCCTATGTTCTCATACACAATTCAAACTCGTAGCTTAATAAATAAAAAACA
* * *
587059 AACAGACAACTTAGA-CAAGATCAATAAAAAACACATTATTTAAGAAAAGATATAACCTAAATCT
193 AAAAAACAACTTAGATC-AGATC-A-AAAAAACACATTATTTAAGAAAAGATATAACCTAAACCT
* * *
587123 TGACAAATATACATCAATAAAAGAACTTAGAAAGGGGAGTCATCCACTCAAGATGCAATGAGAAA
255 TGACAAATATACATCAACAAAAGAACTCAGAAAGGAGAGTCATCCACTCAAGATGCAATGAGAAA
* * * *
587188 TCAAACAATAGAGTTACCAACTATGGAAACATGATGCGGTTGAGCCTGACACCAACCAACAACAA
320 GCAAACAATAGAGTTACCAACTATGGAAACATGAGGCGGTTAAGCATGACACCAACCAACAACAA
* * * * *
587253 CTATAGAGGAGGCCTTGAATCGACCCCCTTACTATTTATTCTCTCCAATAGCTTAGTGAAGTCAT
385 CTATAGAGGAGGCCTTGAAACGACCCCCTTACTATTTATTCCCTCCAATAACTAAGTGAAATCA-
587318 CGTG-AATTAAGGTTGA
449 CGTGAAATTAAGGTTGA
587334 AGGGGAAAAA
Statistics
Matches: 393, Mismatches: 68, Indels: 11
0.83 0.14 0.02
Matches are distributed among these distances:
496 1 0.00
497 89 0.23
498 8 0.02
499 81 0.21
500 1 0.00
501 210 0.53
502 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (498 bp):
AAAATCATTAAGGCTCTACAACAACCAACTATAGCTCAAACGGGACATAGGAATGGTGGACCCAA
ATATCTTATCAGTGGAACAATAAGGCAACCTTCCTCAAGGAGATAAAAGAAGTGCAAATCCACCT
TGGTCCCAAAGCCCTATGTTCTCATACACAATTCAAACTCGTAGCTTAATAAATAAAAAACAAAA
AAACAACTTAGATCAGATCAAAAAAACACATTATTTAAGAAAAGATATAACCTAAACCTTGACAA
ATATACATCAACAAAAGAACTCAGAAAGGAGAGTCATCCACTCAAGATGCAATGAGAAAGCAAAC
AATAGAGTTACCAACTATGGAAACATGAGGCGGTTAAGCATGACACCAACCAACAACAACTATAG
AGGAGGCCTTGAAACGACCCCCTTACTATTTATTCCCTCCAATAACTAAGTGAAATCACGTGAAA
TTAAGGTTGAGGAGGGGAGGACAAACTAAAACTATAACTCAAC
Found at i:590422 original size:433 final size:432
Alignment explanation
Indices: 589414--593296 Score: 5135
Period size: 433 Copynumber: 9.0 Consensus size: 432
589404 CTGTTACCGA
* * * ** * *
589414 TTCCATAAAGTATTCAAAACGATCCATTCCTTTGAGCAATTTCCCGAGCATTCCATACTCAGG-A
1 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTC-GGAA
* * * *
589478 AATCGCATCATTTGGTCCAAAAAAGTTTGTCATTCTGTAAACAACTTTTCGATTTTTGAATTAAA
65 AATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAACTTTT-GGTCTTTGAATTAAA
* * * * *
589543 AACTTATTTACGTCAGAATTATTTCTCTTTTGGTTCTTGGATAAACTTTCGAACTTGTCAAACTT
128 AACTTATTTAAGTCAG-ATTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAAATT
* * * *
589608 TTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCATT
192 TTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATT
* * * * *
589673 CTTCGAACATTCCATGCTCGGGAAATCGTATCTTTTAGTCCAAATGGTTTGTCATTTTGTAAACA
257 TTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
* *
589738 A---------CTTTGAATTTAAAACTTATTTACGTCAGAA-TGTTTCTCTTTTGGTTCTTTGACA
322 ACTTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACA
* * *
589793 AACTTATGAACTTGTGAAACTTTTAAGAGTTCTTTTATAACTTTGG
387 AACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * * * *
589839 TTCCTTAAAGTATTCAAGATGATCCACTCCTTGGAGAAATTTTTCGAACATTCCATGCTTTGG-A
1 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGGAA
* * *
589903 AATAGCATCATTTGGTCCAAATAGTTTGTCA-TTTGTAAACAACTTTTGGTTTTTAAATTAAAAA
65 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * *
589967 CTTATTTAAGTGAGACTTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTT
130 CTTATTTAAGTCAGA-TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAAATTTT
* * *
590032 ACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAAATGATCCATTCTTTTGAGCAATTTT
194 ACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTT
* * *
590097 TTGAGCATTCCATGCTCGGGAAATCACATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAA
259 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAA
* * * *
590162 CTTTTTGATCTTTGAATTAAAAACTTATTTATGTCAGAATTGTTTCTCTTTTGGTTCTTGAACGA
323 CTTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACAA
* *
590227 ACTTCCGAACTTATCAAACTTTTACGAGTTCTTTTATAACTTTGG
388 ACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * *
590272 TTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCATTTTTCGAACATTCCACGCTCGGAAA
1 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGAAA
* * *
590337 ATCGCATCATTTGGTCCAAAT-GCTTTTTCATTTTGTAAACAACTTCTGGTCTTTGAATTTAAAA
66 ATCGCATCATTTGGTCCAAATAG-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * *
590401 CTTATTTAAGTCAGATTGTTTCTCTTTTGGTTCTTGGACGAACTTATGAACTTGTGAAACTTTTA
130 CTTATTTAAGTCAGATTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAAATTTTA
* * * * *
590466 CAAGTTCTTATATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTT
195 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTT
* * * *
590531 CGAACATTCAATGCTTGGGAAATCTCATCATTTGGTTCAAATAGTTTGTCA-TTTGTAAACAAC-
260 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACT
* * * * **
590594 TTTTGG-CTTTTAAATT-AAAACTTATTTAAG-CGAGACTTGTTTCACTTTTGGTTCTTGGATGA
325 TTTTGGTC-TTTGAATTAAAAACTTATTTACGTC-AGAATTGTTTCTCTTTTGGTTCTTGGACAA
* * * * * *
590656 ACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTCATAACTTCGA
388 ACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * * * *
590701 TTCCTTAAAGTATTCAAAACGAACCATTCCTTTGAGCAATTTTTCTAGCATTCCATGCTC-GAGA
1 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGA-A
590765 AATCGCATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAAA
65 AATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAA
* * * * *
590830 AACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTT
128 AACTTATTTAAGTCAG-ATTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAAATT
* * * *
590895 TTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCATT
192 TTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATT
*
590960 TTTCGAACATTCCATGCTCGGGAAATCGCTTCATTTGGTCCAAAT-GCTTTGTCATTTTGTAAAC
257 TTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAG-TTTGTCATTTTGTAAAC
* * *
591024 AACTTTTTGGTCTTTAAATTTAAAACTTATTTACGTAAG-ATTGTTTCTCTTTTGGTTCTTGGAC
321 AACTTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGAC
* * *
591088 GAACTTATGAACTTGTGAAACTTTTACGAGTTCTTTTATAACTTTGG
386 AAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * *
591135 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCTTGGGAA
1 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGAAA
* * * *
591200 ATCGCATCATTTGGACCAAATAGTTTGTCA-TTTGTAAGCAACTTTTTGGTTTTTAAATTAAAAA
66 ATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAA
* * *
591264 CTTATTTAAGTGAGACTTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTT
130 CTTATTTAAGTCAGA-TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAAATTTT
* * *
591329 ACGAGTTCTTTAATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAGTAATTTT
194 ACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTT
* * * * *
591394 TCGAGCATTCCATGCTTGGGAAATCGTATCATTTGGACCAAAATAGTTTGTCGTTTTGTAAACAA
259 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAA
* * *
591459 CTTTTTGGTCTTTGATTTAAAAACTTATTTACGTTAGAATTGTTTCTCATTTGGTTCTTGGACAA
323 CTTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACAA
* * *
591524 ACTTTCAAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGG
388 ACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * *
591569 TTCCTTAAAGTATTCATGACGATCCATTCCTTCAAGCCATTTTTCGAACATTCCATGCTC-GAGA
1 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGA-A
* * *
591633 AATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTGTAAGCAACTTTTGGTTTTTAAATTAAAAA
65 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * *
591697 CTTATTTAAGTGAGACTTGTCTCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTT
130 CTTATTTAAGTCAGA-TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAAATTTT
* * * *
591762 ATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAGTAATTTT
194 ACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTT
* * * * *
591827 TCGAGCATTACATTCTCTGGAAATCGCATCATTTGGTCCAAAATAGTTTGTCATTCTGTAAACAA
259 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAA
*
591892 CTTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTCTCTCTTTTGGTTCTTGGACAA
323 CTTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACAA
* *
591957 ACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
388 ACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * * * ** *
592002 TTCCTTAAAGTAGTCATGACGATCCATTCCTTCGAGCCATTTTTCGAACTTTCCACACTCGGGAA
1 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGAAA
*
592067 ATCGCATCATTTGGTCCAAAT-GCTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTAAAA
66 ATCGCATCATTTGGTCCAAATAG-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * ** * * *
592131 CTTATTTACGTCAGATTGTTTCTCTTTTGGTTCATGGACAAACTTATGAACTTGTGAAACTTTTA
130 CTTATTTAAGTCAGATTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAAATTTTA
* * * * *
592196 CAAGTTCTTTTATAACTTTGTTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTT
195 CGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTT
* *
592261 CGAACATTCCATGCTTGGGAAATCGCATCATTTGGTTCAAATAGTTTGTCA-TTTGTAAACAAC-
260 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACT
* * * * **
592324 TTTTGG-CTTTTAAATT-AAAACTTATTTAAGTGAGACTTGTTTCTCTTTTGGTTCTTGGATGAA
325 TTTTGGTC-TTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACAAA
* * * * * *
592387 CTTACGAGCTTGTCAAAATATTACGAGTTCTTTCATAACTTCGA
389 CTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * *
592431 TTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAGCAATTTTTCGAGCATTCCATGCTC-GAGA
1 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGA-A
*
592495 AATCACATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAAA
65 AATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAA
* * ** * *
592560 AACTTATTTACGTCAGAATTGTCTCTCTTTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAATT
128 AACTTATTTAAGTCAG-ATTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAAATT
* * *
592625 TTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCT-AGCCAT
192 TTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAGCAAT
* * * *
592689 TTTTCAAACTTTCCACGCTCGGGGGAAATCGCATCATTTGGTCCAAAT-GTTTTCTCATTTTGTA
256 TTTTCGAACATTCCATGCTC--GGGAAATCGCATCATTTGGTCCAAATAG-TTTGTCATTTTGTA
* *
592753 AACAAC-TTTTGGTCTTTGAATTTAAAACTTATTTACGTCAG-ATTATTTCTCTTTTGGTTCTTG
318 AACAACTTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTG
* * * * *
592816 GATAAACATATGAACTTGTGAAACTTTTACAAGTTCTTTTATAACTTTGG
383 GACAAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* *
592866 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCT-TGAGA
1 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGA-A
* *
592930 AATCGCATCATTTGGTTCAAATAGTTTGTCA-TTTGTAAACAACTTTTGGAT-TTTAAATT-AAA
65 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGG-TCTTTGAATTAAAA
* * *
592992 ACTTATTTAAGTGAGACTTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATAT
129 ACTTATTTAAGTCAGA-TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAAATTT
* * *
593057 TACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAGCAATTT
193 TACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTT
* * *
593122 TTCGAGCATTCCATGCTCGAGAAATCACATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACA
258 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACA
* *
593187 ACTTTTTGGTCTTTGAATTAAAAACATATTTACGTCAGAATTGTCTCTCTTTTGGTTCTTGGACA
322 ACTTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACA
* * *
593252 AACTTCCAAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTTG
387 AACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTG
Statistics
Matches: 3053, Mismatches: 346, Indels: 111
0.87 0.10 0.03
Matches are distributed among these distances:
421 1 0.00
422 160 0.05
423 39 0.01
424 12 0.00
425 68 0.02
426 1 0.00
428 4 0.00
429 315 0.10
430 97 0.03
431 255 0.08
432 575 0.19
433 893 0.29
434 440 0.14
435 176 0.06
436 17 0.01
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (432 bp):
TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGAAA
ATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
TTATTTAAGTCAGATTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAAATTTTAC
GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTC
GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTT
TTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACAAACT
TACGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
Found at i:592855 original size:649 final size:646
Alignment explanation
Indices: 589412--593296 Score: 5423
Period size: 649 Copynumber: 6.0 Consensus size: 646
589402 AACTGTTACC
* ** * *
589412 GATTCCATAAAGTATTCAAAACGATCCATTCCTTTGAGCAATTTCCCGAGCATTCCATACTCAGG
1 GATTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAGCAATTTTTCGAGCATTCCATGCTCGGG
* * * * *
589477 AAATCGCATCATTTGGTCCAAAAAAGTTTGTCATTCTGTAAACAACTTTTCGATTTTTGAATTAA
66 AAATCGCATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAA
* *
589542 AAACTTATTTACGTCAGAATTATTTCTCTTTTGGTTCTTGGATAAACTT-TCGAACTTGTCAAAC
131 AAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACAAACTTAT-GAACTTGTCAAAC
589606 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCA
195 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCA
* * * * *
589671 TTCTTCGAACATTCCATGCTCGGGAAATCGTATCTTTTAGTCCAAATGGTTTGTCATTTTGTAAA
260 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA
* * * * * *
589736 CAAC-TTT-G----AATTTAAAACTTATTTACGTCAGAATGTTTCTCTTTTGGTTCTTTGACAAA
325 CAACTTTTGGTTTTAAATTAAAACTTATTTAAGTGAGATTGTTTCTCTTTTGGTTCTTGGACGAA
* * * * *
589795 CTTATGAACTTGTGAAACTTTTAAGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATG
390 CTTATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACG
* * * *
589860 ATCCACTCCTTGGAGAAATTTTTCGAACATTCCATGCTTTGGAAAT-AGCATCATTTGGTCCAAA
455 ATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGC-TCGGAAATCA-CATCATTTGGTCCAAA
* *
589924 TAGTTTGTCATTTGTAAACAAC-TTTTGGTTTTTAAATTAAAAACTTATTTAAGTGAGACTTGTT
518 TAGTTTGTCATTTGTAAACAACTTTTTGGTCTTTAAATTAAAAACTTATTTAAGTCAGACTTGTT
589988 TCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTTATAACTTT
583 TCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTTATAACTTT
* * *
590052 GATTCCTTAAAGTATTCAAAATGATCCATTCTTTTGAGCAATTTTTTGAGCATTCCATGCTCGGG
1 GATTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAGCAATTTTTCGAGCATTCCATGCTCGGG
* *
590117 AAATCACATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGATCTTTGAATTAA
66 AAATCGCATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAA
* * * ** *
590182 AAACTTATTTATGTCAGAATTGTTTCTCTTTTGGTTCTTGAACGAACTTCCGAACTTATCAAACT
131 AAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACAAACTTATGAACTTGTCAAACT
590247 TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCAT
196 TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCAT
* * *
590312 TTTTCGAACATTCCACGCTCGGAAAATCGCATCATTTGGTCCAAAT-GCTTTTTCATTTTGTAAA
261 TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAG-TTTGTCATTTTGTAAA
* * *
590376 CAACTTCTGGTCTTTGAATTTAAAACTTATTTAAGTCAGATTGTTTCTCTTTTGGTTCTTGGACG
325 CAACTTTTGGT-TTT-AAATTAAAACTTATTTAAGTGAGATTGTTTCTCTTTTGGTTCTTGGACG
* * * * *
590441 AACTTATGAACTTGTGAAACTTTTACAAGTTCTTATATAACTTTGGTTCCTTAAAGTATTCAAGA
388 AACTTATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAA
* * * * * *
590506 CGATCCATTCCTTCGAGTAATTTTTCGAACATTCAATGCTTGGGAAATCTCATCATTTGGTTCAA
453 CGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGC-TCGGAAATCACATCATTTGGTCCAA
590571 ATAGTTTGTCATTTGTAAACAAC-TTTTGG-CTTTTAAATT-AAAACTTATTTAAG-CGAGACTT
517 ATAGTTTGTCATTTGTAAACAACTTTTTGGTC-TTTAAATTAAAAACTTATTTAAGTC-AGACTT
* *
590632 GTTTCACTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTCATAACT
580 GTTTCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTTATAACT
*
590697 TC
645 TT
* * *
590699 GATTCCTTAAAGTATTCAAAACGAACCATTCCTTTGAGCAATTTTTCTAGCATTCCATGCTCGAG
1 GATTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAGCAATTTTTCGAGCATTCCATGCTCGGG
590764 AAATCGCATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAA
66 AAATCGCATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAA
* ***
590829 AAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACT
131 AAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACAAACTTATGAACTTGTCAAACT
590894 TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCAT
196 TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCAT
*
590959 TTTTCGAACATTCCATGCTCGGGAAATCGCTTCATTTGGTCCAAAT-GCTTTGTCATTTTGTAAA
261 TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAG-TTTGTCATTTTGTAAA
* *
591023 CAACTTTTTGGTCTTTAAATTTAAAACTTATTTACGTAAGATTGTTTCTCTTTTGGTTCTTGGAC
325 CAAC-TTTTGGT-TTTAAA-TTAAAACTTATTTAAGTGAGATTGTTTCTCTTTTGGTTCTTGGAC
* * *
591088 GAACTTATGAACTTGTGAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG
387 GAACTTATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAA
* * * * *
591153 ACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGACCA
452 ACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGC-TCGGAAATCACATCATTTGGTCCA
* * *
591218 AATAGTTTGTCATTTGTAAGCAACTTTTTGGTTTTTAAATTAAAAACTTATTTAAGTGAGACTTG
516 AATAGTTTGTCATTTGTAAACAACTTTTTGGTCTTTAAATTAAAAACTTATTTAAGTCAGACTTG
*
591283 TTTCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTAATAACTT
581 TTTCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTTATAACTT
591348 T
646 T
* *
591349 GATTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAGTAATTTTTCGAGCATTCCATGCTTGGG
1 GATTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAGCAATTTTTCGAGCATTCCATGCTCGGG
* * * *
591414 AAATCGTATCATTTGGACCAAAATAGTTTGTCGTTTTGTAAACAACTTTTTGGTCTTTGATTTAA
66 AAATCGCATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAA
* * *
591479 AAACTTATTTACGTTAGAATTGTTTCTCATTTGGTTCTTGGACAAACTT-TCAAACTTGTCAAAC
131 AAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACAAACTTAT-GAACTTGTCAAAC
* *
591543 TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCAAGCCA
195 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCA
* *
591608 TTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTGTAAG
260 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA
* *
591672 CAACTTTTGGTTTTTAAATTAAAAACTTATTTAAGTGAGACTTGTCTCTCTTTTGGTTCTTGGAT
325 CAACTTTTGG-TTTTAAATT-AAAACTTATTTAAGTGAGA-TTGTTTCTCTTTTGGTTCTTGGAC
* * * * * *
591737 GAACTTACGAGCTTGTCAAAATGTTATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAA
387 GAACTTATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAA
* * * * *
591802 ACGATCCATTCCTTTGAGTAATTTTTCGAGCATTACATTCTCTGGAAATCGCATCATTTGGTCCA
452 ACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTC-GGAAATCACATCATTTGGTCC-
* * *
591867 AAATAGTTTGTCATTCTGTAAACAACTTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAAT
515 AAATAGTTTGTCATT-TGTAAACAACTTTTTGGTCTTTAAATTAAAAACTTATTTAAGTCAGACT
* ** * * * * *
591932 TGTCTCTCTTTTGGTTCTTGGACAAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
579 TGTTTCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTTATAAC
591997 TTT
644 TTT
* * ** * * * * **
592000 GGTTCCTTAAAGTAGTCATGACGATCCATTCCTTCGAGCCATTTTTCGAACTTTCCACACTCGGG
1 GATTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAGCAATTTTTCGAGCATTCCATGCTCGGG
*
592065 AAATCGCATCATTTGGTCC-AAAT-GCTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTT
66 AAATCGCATCATTTGGTCCAAAATAG-TTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTA
* *
592127 AAAACTTATTTACGTCAG-ATTGTTTCTCTTTTGGTTCATGGACAAACTTATGAACTTGTGAAAC
130 AAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACAAACTTATGAACTTGTCAAAC
* * * * **
592191 TTTTACAAGTTCTTTTATAACTTTGTTTCCATAAAGTATTCAAGACGATCCATTCCTTCGAGTAA
195 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCA
* *
592256 TTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTTCAAATAGTTTGTCA-TTTGTAAA
260 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA
*
592320 CAACTTTTGGCTTTTAAATTAAAACTTATTTAAGTGAGACTTGTTTCTCTTTTGGTTCTTGGATG
325 CAACTTTTGG-TTTTAAATTAAAACTTATTTAAGTGAGA-TTGTTTCTCTTTTGGTTCTTGGACG
* * * * * *
592385 AACTTACGAGCTTGTCAAAATATTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAAA
388 AACTTATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAA
*
592450 CGATCCATTCCTTTGAGCAATTTTTCGAGCATTCCATGCTCGAGAAATCACATCATTTGGTCCAA
453 CGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCG-GAAATCACATCATTTGGTCC-A
* * *
592515 AATAGTTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATT
516 AATAGTTTGTCA-TTTGTAAACAACTTTTTGGTCTTTAAATTAAAAACTTATTTAAGTCAGACTT
* ** * * * *
592580 GTCTCTCTTTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAATTTTACGAGTTCTTTTATAACT
580 GTTTCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTTATAACT
592645 TT
645 TT
* ** * * * * *
592647 GGTTCCTTAAAGTATTCATGACGATCCATTCCTTCT-AGCCATTTTTCAAACTTTCCACGCTCGG
1 GATTCCTTAAAGTATTCAAAACGATCCATTCCTT-TGAGCAATTTTTCGAGCATTCCATGCTC--
*
592711 GGGAAATCGCATCATTTGGTCC-AAAT-GTTTTCTCATTTTGTAAACAAC-TTTTGGTCTTTGAA
63 GGGAAATCGCATCATTTGGTCCAAAATAG-TTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAA
* * * * *
592773 TTTAAAACTTATTTACGTCAG-ATTATTTCTCTTTTGGTTCTTGGATAAACATATGAACTTGTGA
127 TTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACAAACTTATGAACTTGTCA
* *
592837 AACTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
192 AACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAG
** * * *
592902 TAATTTTTCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTTCAAATAGTTTGTCA-TTTGT
257 CCATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGT
592966 AAACAACTTTTGGATTTTAAATTAAAACTTATTTAAGTGAGACTTGTTTCTCTTTTGGTTCTTGG
322 AAACAACTTTTGG-TTTTAAATTAAAACTTATTTAAGTGAGA-TTGTTTCTCTTTTGGTTCTTGG
* * * * * * *
593031 ATGAACTTACGAGCTTGTCAAAATATTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCA
385 ACGAACTTATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
*
593096 AAACGATCCATTCCTTTGAGCAATTTTTCGAGCATTCCATGCTCGAGAAATCACATCATTTGGTC
450 AAACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCG-GAAATCACATCATTTGGTC
* * *
593161 CAAAATAGTTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAAAAACATATTTACGTCAGA
514 C-AAATAGTTTGTCA-TTTGTAAACAACTTTTTGGTCTTTAAATTAAAAACTTATTTAAGTCAGA
* * ** * * * *
593226 ATTGTCTCTCTTTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAATTTTACGAGTTCTTTTATA
577 CTTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTTATA
593291 ACTTT
642 ACTTT
593296 G
1 G
Statistics
Matches: 3020, Mismatches: 191, Indels: 59
0.92 0.06 0.02
Matches are distributed among these distances:
639 1 0.00
640 298 0.10
641 2 0.00
642 1 0.00
646 1 0.00
647 750 0.25
648 608 0.20
649 769 0.25
650 417 0.14
651 173 0.06
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (646 bp):
GATTCCTTAAAGTATTCAAAACGATCCATTCCTTTGAGCAATTTTTCGAGCATTCCATGCTCGGG
AAATCGCATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAA
AAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACAAACTTATGAACTTGTCAAACT
TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCAT
TTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAC
AACTTTTGGTTTTAAATTAAAACTTATTTAAGTGAGATTGTTTCTCTTTTGGTTCTTGGACGAAC
TTATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACGA
TCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGAAATCACATCATTTGGTCCAAATAG
TTTGTCATTTGTAAACAACTTTTTGGTCTTTAAATTAAAAACTTATTTAAGTCAGACTTGTTTCT
CTTTTGGTTCTTGGATGAACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTTATAACTTT
Done.