genome.fa.s15192.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015192.1 Kokia drynarioides strain JFW-HI SEQ_130236, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  216668

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7867--7898	2	16.0	2	93	0	55	3	50	0	46	1.17
15647--15708	31	2.0	30	84	3	79	41	12	12	32	1.81
20587--20656	35	2.0	35	94	0	122	22	12	20	44	1.85
24637--24784	73	2.1	70	85	3	197	39	16	16	27	1.90
25427--25457	15	2.1	15	100	0	62	48	19	6	25	1.72
32703--32755	22	2.4	22	81	12	63	64	0	1	33	1.05
32734--32773	18	2.1	20	86	9	57	65	0	2	32	1.06
41725--41749	2	12.5	2	100	0	50	0	48	0	52	1.00
46970--47011	17	2.4	17	88	4	57	47	2	28	21	1.63
51275--51313	19	2.1	19	100	0	78	33	15	0	51	1.44
63621--63779	63	2.5	63	95	2	284	27	44	6	22	1.77
71697--71752	25	2.2	26	87	6	87	35	23	28	12	1.91
90261--90294	17	2.0	17	88	0	50	32	2	0	64	1.08
93662--93701	20	2.0	20	90	9	64	25	2	7	65	1.32
99800--99861	29	2.4	27	78	19	69	27	3	6	62	1.35
100156--100181	11	2.4	11	100	0	52	23	0	0	76	0.78
100524--100576	4	12.8	4	80	7	52	69	0	30	0	0.88
102743--102783	21	2.0	20	85	4	55	34	7	9	48	1.64
103616--103717	23	4.4	23	79	9	118	39	25	18	16	1.91
103616--103713	46	2.1	46	85	7	137	39	24	18	17	1.91
108578--108631	24	2.3	23	72	15	56	42	3	22	31	1.71
113758--113829	29	2.5	30	77	8	78	59	2	0	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114386--114443	27	2.2	25	77	11	62	24	0	6	68	1.13
121421--121451	3	10.3	3	100	0	62	32	0	0	67	0.91
123502--123578	38	2.0	38	100	0	154	42	23	7	25	1.81
123815--123852	20	1.9	20	88	0	58	52	18	10	18	1.73
123821--123892	21	3.5	21	76	1	65	37	22	18	22	1.94
127836--127875	18	2.2	18	86	8	55	65	0	0	35	0.93
127932--127990	30	2.0	30	90	6	93	45	6	11	35	1.67
128903--129190	146	2.0	147	83	5	368	35	13	21	28	1.92
132885--132918	16	2.1	16	88	0	50	58	0	2	38	1.13
138012--138038	5	5.4	5	100	0	54	0	62	0	37	0.95
143872--143910	19	2.0	20	90	5	62	66	0	0	33	0.92
146918--146988	31	2.3	31	100	0	142	60	2	19	16	1.48
151149--151204	29	1.9	29	85	0	76	46	8	3	41	1.52
153634--154300	175	3.8	175	92	1	1043	27	12	17	42	1.85
155752--155813	19	3.2	20	79	6	74	56	1	0	41	1.09
158362--158413	27	1.9	27	92	0	86	55	7	11	25	1.61
161662--161740	27	2.9	27	82	0	104	30	17	22	29	1.97
167690--167743	28	1.9	28	88	7	83	46	1	1	50	1.23
168639--168683	22	2.1	21	84	15	58	77	0	11	11	0.99
170936--170989	24	2.2	24	96	0	99	57	22	18	1	1.50
171150--171301	48	3.2	48	89	1	243	35	17	26	20	1.95
171693--171741	9	5.4	9	80	0	53	61	2	30	6	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171695--171741	18	2.6	18	80	12	60	61	2	29	6	1.32
173901--173942	18	2.3	18	83	0	57	42	0	42	14	1.45
177931--177960	14	2.1	14	100	0	60	36	6	10	46	1.64
178096--178145	23	2.2	23	96	3	93	14	18	28	40	1.89
178597--178636	20	2.0	21	85	5	55	32	10	2	55	1.47
183096--183134	17	2.3	17	90	0	60	15	12	25	46	1.81
192237--192288	27	1.9	27	84	7	70	36	3	0	59	1.16
194827--194859	2	16.5	2	100	0	66	48	0	51	0	1.00
209398--209457	29	2.1	29	83	0	75	58	8	0	33	1.28
209462--209499	19	2.1	18	85	14	51	63	0	0	36	0.95
209528--209577	24	2.1	24	81	7	57	52	10	12	26	1.70
214338--214367	15	2.0	15	100	0	60	6	6	40	46	1.56

Tables:   1

The End!