Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015193.1 Kokia drynarioides strain JFW-HI SEQ_130237, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 594178
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 490 characters in sequence are not A, C, G, or T
File 2 of 3
Found at i:249969 original size:19 final size:19
Alignment explanation
Indices: 249947--249990 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
249937 TTAAAGGGAC
249947 TTTTTATACATTT-TATAAA
1 TTTTTAT-CATTTCTATAAA
*
249966 TTTTTATGATTTCTATAAA
1 TTTTTATCATTTCTATAAA
*
249985 ATTTTA
1 TTTTTA
249991 CAATTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (19 bp):
TTTTTATCATTTCTATAAA
Found at i:250064 original size:26 final size:27
Alignment explanation
Indices: 250031--250082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
250021 AAAAAATTTC
*
250031 AATTTTTAATAAATTTTAA-ATTTTTA
1 AATTTTTAATAAAATTTAATATTTTTA
*
250057 AATTTTTATTAAAATTTAATATTTTT
1 AATTTTTAATAAAATTTAATATTTTT
250083 TCTAAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (27 bp):
AATTTTTAATAAAATTTAATATTTTTA
Found at i:250068 original size:19 final size:19
Alignment explanation
Indices: 250053--250106 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
250043 ATTTTAAATT
250053 TTTAA-ATTTTTATTAAAA
1 TTTAATATTTTTATTAAAA
250071 TTTAATATTTTT-TCTAAAA
1 TTTAATATTTTTAT-TAAAA
*
250090 TTTATTATTTATTATTA
1 TTTAATATTT-TTATTA
250107 TTTATAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
18 6 0.19
19 20 0.65
20 4 0.13
21 1 0.03
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTAATATTTTTATTAAAA
Found at i:250304 original size:25 final size:25
Alignment explanation
Indices: 250272--250321 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
250262 TACACTCTTA
250272 AACCTATTATAAATAATCATTTTTT
1 AACCTATTATAAATAATCATTTTTT
250297 AACCTATTATAAATAATCATTTTTT
1 AACCTATTATAAATAATCATTTTTT
250322 TACTTTTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (25 bp):
AACCTATTATAAATAATCATTTTTT
Found at i:254594 original size:9 final size:9
Alignment explanation
Indices: 254582--254613 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
254572 CATAATAAAT
254582 ATAATATTA
1 ATAATATTA
254591 ATAATATTAA
1 ATAATATT-A
254601 ATAATATTA
1 ATAATATTA
254610 ATAA
1 ATAA
254614 AACAAAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
ATAATATTA
Found at i:254605 original size:10 final size:10
Alignment explanation
Indices: 254582--254610 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
254572 CATAATAAAT
254582 ATAATATT-A
1 ATAATATTAA
254591 ATAATATTAA
1 ATAATATTAA
254601 ATAATATTAA
1 ATAATATTAA
254611 TAAAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATAATATTAA
Found at i:254949 original size:29 final size:29
Alignment explanation
Indices: 254896--255075 Score: 132
Period size: 29 Copynumber: 6.2 Consensus size: 29
254886 GATTCGATCA
* * *
254896 ATTTTTACCCTCGAACATTC-AAAAATTAT
1 ATTTTTGCCCCCGAAC-TTCTAAAAATTAC
*
254925 ATTATTGCCCCCGAACTTCTAAAAATTAC
1 ATTTTTGCCCCCGAACTTCTAAAAATTAC
* * * *
254954 ATTTTTACCCTCGAACTACTCAAAAATTAT
1 ATTTTTGCCCCCGAACTTCT-AAAAATTAC
* * *
254984 ATTTTTGCCTCCAAACTT-TCAAAAATCAC
1 ATTTTTGCCCCCGAACTTCT-AAAAATTAC
* * * *
255013 ATTTTAGCCCCCAAACTTTTAAAAATCAC
1 ATTTTTGCCCCCGAACTTCTAAAAATTAC
** * *
255042 ATTTTTAACCCCGAATTTC-CAAAATTACC
1 ATTTTTGCCCCCGAACTTCTAAAAATTA-C
255071 ATTTT
1 ATTTT
255076 GCTTCGAACA
Statistics
Matches: 121, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
28 9 0.07
29 90 0.74
30 22 0.18
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.36
Consensus pattern (29 bp):
ATTTTTGCCCCCGAACTTCTAAAAATTAC
Found at i:254992 original size:59 final size:58
Alignment explanation
Indices: 254892--255017 Score: 175
Period size: 59 Copynumber: 2.2 Consensus size: 58
254882 GTCAGATTCG
* *
254892 ATCA-ATTTTTACCCTCGAACATTCAAAAATTATATTATTGCCCCCGAAC-TTCTAAAA
1 ATCACATTTTTACCCTCGAACACTCAAAAATTATATTATTGCCCCCAAACTTTC-AAAA
* * *
254949 ATTACATTTTTACCCTCGAACTACTCAAAAATTATATTTTTGCCTCCAAACTTTCAAAA
1 ATCACATTTTTACCCTCGAAC-ACTCAAAAATTATATTATTGCCCCCAAACTTTCAAAA
255008 ATCACATTTT
1 ATCACATTTT
255018 AGCCCCCAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
57 3 0.05
58 16 0.27
59 38 0.63
60 3 0.05
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.37
Consensus pattern (58 bp):
ATCACATTTTTACCCTCGAACACTCAAAAATTATATTATTGCCCCCAAACTTTCAAAA
Found at i:255075 original size:28 final size:27
Alignment explanation
Indices: 255050--255133 Score: 105
Period size: 27 Copynumber: 3.0 Consensus size: 27
255040 ACATTTTTAA
**
255050 CCCCGAATTTCCAAAATTACCATTTTG
1 CCCCGAACATCCAAAATTACCATTTTG
** *
255077 CTTCGAACATCCAAAATTACCATTTTAC
1 CCCCGAACATCCAAAATTACCATTTT-G
255105 CCCCGAACATCCAAAAGTTACCATTTTG
1 CCCCGAACATCCAAAA-TTACCATTTTG
255133 C
1 C
255134 TCCCAAATTT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 22 0.47
28 15 0.32
29 10 0.21
ACGTcount: A:0.32, C:0.31, G:0.07, T:0.30
Consensus pattern (27 bp):
CCCCGAACATCCAAAATTACCATTTTG
Found at i:255091 original size:27 final size:27
Alignment explanation
Indices: 255059--255136 Score: 111
Period size: 27 Copynumber: 2.8 Consensus size: 27
255049 ACCCCGAATT
*
255059 TCCAAAATTACCATTTTGCTTCGAACA
1 TCCAAAATTACCATTTTGCTCCGAACA
* *
255086 TCCAAAATTACCATTTTACCCCCGAACA
1 TCCAAAATTACCATTTT-GCTCCGAACA
255114 TCCAAAAGTTACCATTTTGCTCC
1 TCCAAAA-TTACCATTTTGCTCC
255137 CAAATTTCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
27 17 0.39
28 17 0.39
29 10 0.23
ACGTcount: A:0.32, C:0.31, G:0.06, T:0.31
Consensus pattern (27 bp):
TCCAAAATTACCATTTTGCTCCGAACA
Found at i:255151 original size:29 final size:28
Alignment explanation
Indices: 255055--255149 Score: 95
Period size: 29 Copynumber: 3.4 Consensus size: 28
255045 TTTAACCCCG
* *
255055 AATTTCCAAAATTACCATTTTGCTTCGA
1 AATTTCCAAAATTACCATTTTGCTCCCA
* * *
255083 ACA--TCCAAAATTACCATTTTACCCCCG
1 A-ATTTCCAAAATTACCATTTTGCTCCCA
**
255110 AACATCCAAAAGTTACCATTTTGCTCCCA
1 AATTTCCAAAA-TTACCATTTTGCTCCCA
255139 AATTTCCAAAA
1 AATTTCCAAAA
255150 GTCACATTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.02
27 20 0.38
28 8 0.15
29 24 0.45
ACGTcount: A:0.36, C:0.28, G:0.05, T:0.31
Consensus pattern (28 bp):
AATTTCCAAAATTACCATTTTGCTCCCA
Found at i:255342 original size:14 final size:14
Alignment explanation
Indices: 255325--255354 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
255315 CGTATTTCAT
*
255325 TTTTCTTATATTTA
1 TTTTCATATATTTA
255339 TTTTCATATATTTA
1 TTTTCATATATTTA
255353 TT
1 TT
255355 CATTCGTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTCATATATTTA
Found at i:260522 original size:20 final size:20
Alignment explanation
Indices: 260486--260524 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
260476 AGGAAGGAAG
*
260486 ATTAAGACTCACGTTGAGAA
1 ATTAAGACTCACCTTGAGAA
260506 ATTAAGA-TCACCCTTGAGA
1 ATTAAGACTCA-CCTTGAGA
260525 TAGGTATGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (20 bp):
ATTAAGACTCACCTTGAGAA
Found at i:267419 original size:30 final size:30
Alignment explanation
Indices: 267375--267548 Score: 143
Period size: 29 Copynumber: 6.0 Consensus size: 30
267365 AAAGGTCCTT
267375 GAACTGTC-CAAAAATCATATTTTGACCCTC
1 GAACT-TCTCAAAAATCATATTTTGACCCTC
* *
267405 GAACTTCTCTAAAATTATATTTT-ACCCTC
1 GAACTTCTCAAAAATCATATTTTGACCCTC
* * *
267434 AAACTTC-CAAAAATTATATTTTTG-CTC-C
1 GAACTTCTCAAAAATCATA-TTTTGACCCTC
267462 GAACTTCTCAAAAATTACAT-TTTTG--CCTC
1 GAACTTCTCAAAAA-T-CATATTTTGACCCTC
* * *
267491 TAAACTTC-CAAAAATCACATTTTGGCCCTC
1 -GAACTTCTCAAAAATCATATTTTGACCCTC
* *
267521 GAACTTCT-AAAAATCACATTTTTACCCT
1 GAACTTCTCAAAAATCATATTTTGACCCT
267549 TGGATCTCCA
Statistics
Matches: 119, Mismatches: 13, Indels: 25
0.76 0.08 0.16
Matches are distributed among these distances:
27 2 0.02
28 24 0.20
29 62 0.52
30 29 0.24
31 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (30 bp):
GAACTTCTCAAAAATCATATTTTGACCCTC
Found at i:267561 original size:58 final size:59
Alignment explanation
Indices: 267371--267549 Score: 213
Period size: 58 Copynumber: 3.1 Consensus size: 59
267361 CTTAAAAGGT
* * * *
267371 CCTTGAACTGTCCAAAAATCATATTTTGACCCTCGAACTTCTCTAAAATTATA-TTTTAC
1 CCTTAAACT-TCCAAAAATCATATTTTGGCCCTCGAACTTCTCAAAAATTACATTTTTAC
* * * * *
267430 CCTCAAACTTCCAAAAATTATATTTTTGCTC-CGAACTTCTCAAAAATTACATTTTT-G
1 CCTTAAACTTCCAAAAATCATATTTTGGCCCTCGAACTTCTCAAAAATTACATTTTTAC
* *
267487 CCTCTAAACTTCCAAAAATCACATTTTGGCCCTCGAACTTCT-AAAAATCACATTTTTAC
1 CCT-TAAACTTCCAAAAATCATATTTTGGCCCTCGAACTTCTCAAAAATTACATTTTTAC
267546 CCTT
1 CCTT
267550 GGATCTCCAA
Statistics
Matches: 100, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
57 21 0.21
58 60 0.60
59 19 0.19
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (59 bp):
CCTTAAACTTCCAAAAATCATATTTTGGCCCTCGAACTTCTCAAAAATTACATTTTTAC
Found at i:267590 original size:27 final size:27
Alignment explanation
Indices: 267555--267629 Score: 114
Period size: 27 Copynumber: 2.7 Consensus size: 27
267545 CCCTTGGATC
267555 TCCAAAATTACCATTTTGCCCTGAACA
1 TCCAAAATTACCATTTTGCCCTGAACA
*
267582 TCCAAAATTACCATTTTACCCCTGAACA
1 TCCAAAATTACCATTTT-GCCCTGAACA
*
267610 TCCAATAGTTACCATTTTGC
1 TCCAA-AATTACCATTTTGC
267630 TCCCAAATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 17 0.40
28 15 0.35
29 11 0.26
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.32
Consensus pattern (27 bp):
TCCAAAATTACCATTTTGCCCTGAACA
Found at i:276758 original size:51 final size:51
Alignment explanation
Indices: 276699--276797 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
276689 ATGCATGTCA
* * * * *
276699 AAGTCCACTTGAGACTTTATTTTATCTAGTCTCCAAAGAAAGTGAGTGGGC
1 AAGTCCACTTGAAACTTCAATATATCTAGTCTCCAAAGAAAATGAGTGGGC
*
276750 AAGTCCACTTGAAACTTCAATATATCTAGTTTCCAAAGAAAATGAGTG
1 AAGTCCACTTGAAACTTCAATATATCTAGTCTCCAAAGAAAATGAGTG
276798 CATTCAAAGA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.30
Consensus pattern (51 bp):
AAGTCCACTTGAAACTTCAATATATCTAGTCTCCAAAGAAAATGAGTGGGC
Found at i:277023 original size:18 final size:18
Alignment explanation
Indices: 276970--277023 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
276960 CTAATATAAT
*
276970 ATTTGGTATTTGAATTTGA
1 ATTTGGTATTT-AATTTTA
* **
276989 ATTTGATATTTTTTTTTA
1 ATTTGGTATTTAATTTTA
*
277007 ATTTGGTATCTAATTTT
1 ATTTGGTATTTAATTTT
277024 TTTGTGTGTC
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
18 17 0.63
19 10 0.37
ACGTcount: A:0.24, C:0.02, G:0.13, T:0.61
Consensus pattern (18 bp):
ATTTGGTATTTAATTTTA
Found at i:277113 original size:30 final size:31
Alignment explanation
Indices: 277038--277113 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
277028 TGTGTCTAAT
* * *
277038 TTGGTACTCAAACTCAACACTTTTTCTTAAT
1 TTGGTACTTAAACTTAACACTTTTTCTTAAA
* * *
277069 TTGATACCTAAACTTGACACTTTTT-TTAAA
1 TTGGTACTTAAACTTAACACTTTTTCTTAAA
277099 TTGGTACTTAAACTT
1 TTGGTACTTAAACTT
277114 TTTGGGATCC
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
30 17 0.46
31 20 0.54
ACGTcount: A:0.30, C:0.18, G:0.08, T:0.43
Consensus pattern (31 bp):
TTGGTACTTAAACTTAACACTTTTTCTTAAA
Found at i:277443 original size:58 final size:59
Alignment explanation
Indices: 277311--277478 Score: 205
Period size: 61 Copynumber: 2.8 Consensus size: 59
277301 AATATTTAAT
* * * *
277311 AAATTTAGGTACCAAATTAGAAAAAAAATGCCAAGTTTAGGTACCAAATTGGGTTCAAAA
1 AAATTTAGGTACCAAATTAG-AAAAAAATGTCAAATTCAGGTACCAAATTGAGTTCAAAA
* *
277371 AAAGTTTAGGTACCAAATTAGAAAAAAAGTATCAAATTCAGGTGCCAAATTGAG-TC-AAA
1 AAA-TTTAGGTACCAAATTAGAAAAAAA-TGTCAAATTCAGGTACCAAATTGAGTTCAAAA
* * *
277430 AAATTTAGATACCAAATTAAGAAAAAAATGTCAAATTTAGATACCAAAT
1 AAATTTAGGTACCAAATT-AGAAAAAAATGTCAAATTCAGGTACCAAAT
277479 GTTATATTAA
Statistics
Matches: 94, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
58 31 0.33
59 15 0.16
60 12 0.13
61 36 0.38
ACGTcount: A:0.49, C:0.11, G:0.14, T:0.25
Consensus pattern (59 bp):
AAATTTAGGTACCAAATTAGAAAAAAATGTCAAATTCAGGTACCAAATTGAGTTCAAAA
Found at i:279319 original size:17 final size:17
Alignment explanation
Indices: 279297--279329 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
279287 AAAATGAAAA
*
279297 TTTGATTTTTTTTTAAT
1 TTTGATTATTTTTTAAT
279314 TTTGATTATTTTTTAA
1 TTTGATTATTTTTTAA
279330 AGAAAATGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (17 bp):
TTTGATTATTTTTTAAT
Found at i:284495 original size:9 final size:9
Alignment explanation
Indices: 284483--284509 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
284473 TTATTAATTT
284483 AAAATTAAA
1 AAAATTAAA
284492 AAAATTAAA
1 AAAATTAAA
284501 AAAATTAAA
1 AAAATTAAA
284510 TGAAAAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAATTAAA
Found at i:284643 original size:15 final size:15
Alignment explanation
Indices: 284620--284649 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
284610 GAAAATATAT
*
284620 TAACTTAAGAGATAA
1 TAACCTAAGAGATAA
284635 TAACCTAAGAGATAA
1 TAACCTAAGAGATAA
284650 ATAATAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.10, G:0.13, T:0.23
Consensus pattern (15 bp):
TAACCTAAGAGATAA
Found at i:286904 original size:19 final size:18
Alignment explanation
Indices: 286847--286904 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
286837 AAAATTATTT
*
286847 AAATACAAAATATATTATAA
1 AAATA-AAAA-ATATTAAAA
*
286867 AAATTAAAAATATTCAAAA
1 AAATAAAAAATATT-AAAA
*
286886 CAATAAAAAATATTAAAA
1 AAATAAAAAATATTAAAA
286904 A
1 A
286905 TATTATAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
18 9 0.28
19 19 0.59
20 4 0.12
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (18 bp):
AAATAAAAAATATTAAAA
Found at i:286914 original size:19 final size:17
Alignment explanation
Indices: 286853--286917 Score: 67
Period size: 19 Copynumber: 3.5 Consensus size: 17
286843 ATTTAAATAC
286853 AAAATATATTATAAAAATT
1 AAAA-ATATTA-AAAAATT
*
286872 AAAAATATTCAAAACAATA
1 AAAAATATT-AAAA-AATT
286891 AAAAATATTAAAAATATT
1 AAAAATATTAAAAA-ATT
286909 ATAAAATAT
1 A-AAAATAT
286918 AGAAAAGTGC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
17 1 0.03
18 15 0.38
19 24 0.60
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAAATATTAAAAAATT
Found at i:286923 original size:9 final size:9
Alignment explanation
Indices: 286853--286917 Score: 62
Period size: 9 Copynumber: 6.9 Consensus size: 9
286843 ATTTAAATAC
286853 AAAATATATT
1 AAAA-ATATT
286863 ATAAAA-ATT
1 A-AAAATATT
286872 AAAAATATT
1 AAAAATATT
*
286881 CAAAACA-ATA
1 -AAAA-ATATT
286891 AAAAATATT
1 AAAAATATT
286900 AAAAATATT
1 AAAAATATT
286909 ATAAAATAT
1 A-AAAATAT
286918 AGAAAAGTGC
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
8 5 0.11
9 23 0.49
10 15 0.32
11 4 0.09
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (9 bp):
AAAAATATT
Found at i:286944 original size:21 final size:21
Alignment explanation
Indices: 286914--286953 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
286904 ATATTATAAA
*
286914 ATATAGAAAAGTGCAAAAAAT
1 ATATAGAAAAGTCCAAAAAAT
* *
286935 ATATATAAAATTCCAAAAA
1 ATATAGAAAAGTCCAAAAA
286954 GGGTGAGTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.23
Consensus pattern (21 bp):
ATATAGAAAAGTCCAAAAAAT
Found at i:287647 original size:29 final size:29
Alignment explanation
Indices: 287608--287673 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
287598 ATTATAAAAC
* *
287608 TTATAAAAAATCTAATAAAATATTAAAATA
1 TTATAAAAATTCTAA-AAAATATAAAAATA
* *
287638 TTATAAAAATTTTGAAAAATATAAAAATA
1 TTATAAAAATTCTAAAAAATATAAAAATA
287667 TTATAAA
1 TTATAAA
287674 TATTATTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 20 0.62
30 12 0.38
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (29 bp):
TTATAAAAATTCTAAAAAATATAAAAATA
Found at i:287656 original size:39 final size:38
Alignment explanation
Indices: 287591--287686 Score: 115
Period size: 39 Copynumber: 2.5 Consensus size: 38
287581 TATAACAAGT
* *
287591 TTATAAA-ATTATAAAACTTATAAAAAATCTAATAAAATA
1 TTATAAATATTATAAAAATTATAAAAAATAT-A-AAAATA
* *
287630 TTA-AAATATTATAAAAATTTTGAAAAATATAAAAATA
1 TTATAAATATTATAAAAATTATAAAAAATATAAAAATA
287667 TTATAAATATTATTAAAAAT
1 TTATAAATATTA-TAAAAAT
287687 GGTTGAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
37 9 0.18
38 12 0.24
39 29 0.58
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.36
Consensus pattern (38 bp):
TTATAAATATTATAAAAATTATAAAAAATATAAAAATA
Found at i:287664 original size:9 final size:9
Alignment explanation
Indices: 287564--287686 Score: 63
Period size: 9 Copynumber: 12.7 Consensus size: 9
287554 TTCAAAGTCC
287564 AAAAATTACT
1 AAAAATTA-T
*
287574 ACAATATTAT
1 A-AAAATTAT
*
287584 AACAAGTT-T
1 AA-AAATTAT
287593 ATAAAATTAT
1 A-AAAATTAT
*
287603 AAAACTTAT
1 AAAAATTAT
287612 AAAAAATCTAAT
1 -AAAAAT-T-AT
287624 AAAATATTA-
1 AAAA-ATTAT
*
287633 AAATATTAT
1 AAAAATTAT
*
287642 AAAAATTTT
1 AAAAATTAT
287651 GAAAAA-TAT
1 -AAAAATTAT
287660 AAAAATATTAT
1 -AAAA-ATTAT
*
287671 AAATATTATT
1 AAAAATTA-T
287681 AAAAAT
1 AAAAAT
287687 GGTTGAATAT
Statistics
Matches: 87, Mismatches: 13, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
8 4 0.05
9 34 0.39
10 30 0.34
11 15 0.17
12 4 0.05
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (9 bp):
AAAAATTAT
Found at i:287684 original size:29 final size:29
Alignment explanation
Indices: 287624--287686 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
287614 AAAATCTAAT
*
287624 AAAATATTAAAATATTATAAAAATTTTGA
1 AAAATATAAAAATATTATAAAAATTTTGA
*
287653 AAAATATAAAAATATTATAAATATTATT-A
1 AAAATATAAAAATATTATAAAAATT-TTGA
287682 AAAAT
1 AAAAT
287687 GGTTGAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 29 0.94
30 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (29 bp):
AAAATATAAAAATATTATAAAAATTTTGA
Found at i:287739 original size:20 final size:19
Alignment explanation
Indices: 287624--287742 Score: 75
Period size: 20 Copynumber: 6.1 Consensus size: 19
287614 AAAATCTAAT
*
287624 AAAATATTAAAATATTATA
1 AAAATATGAAAATATTATA
*
287643 AAAATTTTGAAAA-A-TATA
1 AAAA-TATGAAAATATTATA
*
287661 AAAATATTATAAATATTATTA
1 AAAATATGA-AAATATTA-TA
*
287682 AAAATGGTTG--AATATTATA
1 AAAAT--ATGAAAATATTATA
* **
287701 AAATACTATTAGTATATTATGA
1 AAA-A-TATGAAAATATTAT-A
287723 AAAATATGAAAATATTATA
1 AAAATATGAAAATATTATA
287742 A
1 A
287743 TAATTAGAAA
Statistics
Matches: 76, Mismatches: 12, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
17 3 0.04
18 11 0.14
19 14 0.18
20 27 0.36
21 16 0.21
22 4 0.05
23 1 0.01
ACGTcount: A:0.56, C:0.01, G:0.06, T:0.37
Consensus pattern (19 bp):
AAAATATGAAAATATTATA
Found at i:291264 original size:29 final size:28
Alignment explanation
Indices: 291194--291266 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 28
291184 GATTCTTATA
291194 TTTTATACATTTAAAATTTAATCTTTTAAT
1 TTTTATA-A-TTAAAATTTAATCTTTTAAT
** *
291224 TTTTATTTTTAAGAATTTAATCTTTTTAT
1 TTTTATAATTAA-AATTTAATCTTTTAAT
291253 TTTT-TAAATTAAAA
1 TTTTAT-AATTAAAA
291267 AATATGCTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
28 7 0.19
29 23 0.64
30 6 0.17
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (28 bp):
TTTTATAATTAAAATTTAATCTTTTAAT
Found at i:292871 original size:16 final size:16
Alignment explanation
Indices: 292833--292884 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
292823 TTTGGGTTTA
292833 TATATTTTATATTTAT-
1 TATATTTTATA-TTATC
* *
292849 TAAATTTTTTATTATC
1 TATATTTTATATTATC
292865 TATA-TTTATATTATTC
1 TATATTTTATATTA-TC
292881 TATA
1 TATA
292885 AAGTTTGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
15 12 0.40
16 18 0.60
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (16 bp):
TATATTTTATATTATC
Found at i:296861 original size:29 final size:29
Alignment explanation
Indices: 296795--296861 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 29
296785 TTGACGAATT
*
296795 TTGTAAATGTTTAGAGTTAAATTTGTTAAAA
1 TTGTAAA--TTTAGAGTTAAATTTGATAAAA
*
296826 TTTTAAATTTAGA-TTCAAA-TTGATAAAA
1 TTGTAAATTTAGAGTT-AAATTTGATAAAA
296854 TGTGTAAA
1 T-TGTAAA
296862 CATTGGAGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
28 11 0.35
29 14 0.45
31 6 0.19
ACGTcount: A:0.42, C:0.01, G:0.13, T:0.43
Consensus pattern (29 bp):
TTGTAAATTTAGAGTTAAATTTGATAAAA
Found at i:298973 original size:113 final size:113
Alignment explanation
Indices: 298831--299064 Score: 378
Period size: 113 Copynumber: 2.1 Consensus size: 113
298821 GAAATCCATT
* * * *
298831 AATCCAAAGAAACTTAATAGGAAGAAGATATTGGAGCCAAAAATATTGAATTTTTTGGTTAATGG
1 AATCAAAAGAAACTTAACAGGAAGAAGATATTGGAACCAAAAATATTGAATCTTTTGGTTAATGG
* *
298896 GTTTTAAAGATTCAAGCTTTCAGACAGATTTATAACTAAATATATTGG
66 GTTTTAAAGATTCAAGCTTTCAAACAGATTTATAACTAAATATATTGA
*
298944 AATCAAAAGAAACTTAACAGGAAGAAGATATTGGAACCAAATATATTGAATCTTTTGGTTAATGG
1 AATCAAAAGAAACTTAACAGGAAGAAGATATTGGAACCAAAAATATTGAATCTTTTGGTTAATGG
* * *
299009 GTTTTAAAGATTTAAGCTTTGAAACAGATTTGTAACTAAATATATTGA
66 GTTTTAAAGATTCAAGCTTTCAAACAGATTTATAACTAAATATATTGA
299057 AATCAAAA
1 AATCAAAA
299065 AAGAAGAAGA
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
113 111 1.00
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.32
Consensus pattern (113 bp):
AATCAAAAGAAACTTAACAGGAAGAAGATATTGGAACCAAAAATATTGAATCTTTTGGTTAATGG
GTTTTAAAGATTCAAGCTTTCAAACAGATTTATAACTAAATATATTGA
Found at i:304290 original size:3 final size:3
Alignment explanation
Indices: 304282--304336 Score: 92
Period size: 3 Copynumber: 18.3 Consensus size: 3
304272 TTTGTTTCCA
* *
304282 ATT ATT ATT ATT ATT GTT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
304330 ATT ATT A
1 ATT ATT A
304337 GTTGAACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:313979 original size:6 final size:6
Alignment explanation
Indices: 313968--313992 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
313958 CAATAATAGT
313968 AGAACA AGAACA AGAACA AGAACA A
1 AGAACA AGAACA AGAACA AGAACA A
313993 AACGAAACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.16, G:0.16, T:0.00
Consensus pattern (6 bp):
AGAACA
Found at i:324186 original size:2 final size:2
Alignment explanation
Indices: 324179--324211 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
324169 AGGTGCACTT
324179 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
324212 TTCATGTTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:325631 original size:2 final size:2
Alignment explanation
Indices: 325614--325650 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
325604 CATACAACCA
* *
325614 AT AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
325651 ACCTACCATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:326241 original size:28 final size:28
Alignment explanation
Indices: 326175--326326 Score: 198
Period size: 28 Copynumber: 5.5 Consensus size: 28
326165 CGCCAAACCT
* * *
326175 AGAGTAATGCTATTTTGAGCCA-AATAC
1 AGAGTAACGCTCTTTCGAGCCAGAATAC
* * * *
326202 AGAATAATGCTCTTTCGAGCTAGAATAA
1 AGAGTAACGCTCTTTCGAGCCAGAATAC
326230 AGAGTAACGCTCTTTCGAGCCAGAATAC
1 AGAGTAACGCTCTTTCGAGCCAGAATAC
326258 AGAGTAACGCTCTTTCGAGCCAGAATAC
1 AGAGTAACGCTCTTTCGAGCCAGAATAC
* *
326286 AAAGTAACGCTCTTTTGAGCCAGAATAC
1 AGAGTAACGCTCTTTCGAGCCAGAATAC
* *
326314 AGAATATCGCTCT
1 AGAGTAACGCTCT
326327 AAAGCCTTCC
Statistics
Matches: 110, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 18 0.16
28 92 0.84
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (28 bp):
AGAGTAACGCTCTTTCGAGCCAGAATAC
Found at i:326270 original size:56 final size:57
Alignment explanation
Indices: 326175--326326 Score: 220
Period size: 56 Copynumber: 2.7 Consensus size: 57
326165 CGCCAAACCT
* * * *
326175 AGAGTAATGCTATTTTGAGCCA-AATACAGAATAATGCTCTTTCGAGCTAGAATA-A
1 AGAGTAACGCTCTTTTGAGCCAGAATACAGAATAACGCTCTTTCGAGCCAGAATACA
* *
326230 AGAGTAACGCTCTTTCGAGCCAGAATACAGAGTAACGCTCTTTCGAGCCAGAATACA
1 AGAGTAACGCTCTTTTGAGCCAGAATACAGAATAACGCTCTTTCGAGCCAGAATACA
*
326287 A-AGTAACGCTCTTTTGAGCCAGAATACAGAATATCGCTCT
1 AGAGTAACGCTCTTTTGAGCCAGAATACAGAATAACGCTCT
326327 AAAGCCTTCC
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
55 19 0.22
56 65 0.76
57 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (57 bp):
AGAGTAACGCTCTTTTGAGCCAGAATACAGAATAACGCTCTTTCGAGCCAGAATACA
Found at i:326790 original size:23 final size:23
Alignment explanation
Indices: 326764--326810 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
326754 TCTAGTCCTT
326764 AAACCCACTTTACAAAATCATCA
1 AAACCCACTTTACAAAATCATCA
326787 AAACCCACTTTACAAAATCATCA
1 AAACCCACTTTACAAAATCATCA
326810 A
1 A
326811 TTCTAACAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (23 bp):
AAACCCACTTTACAAAATCATCA
Found at i:327946 original size:34 final size:34
Alignment explanation
Indices: 327908--327978 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
327898 AAACTTGATC
327908 TCTTACAACAAACTTTATATCCTTTCTCTTGAGA
1 TCTTACAACAAACTTTATATCCTTTCTCTTGAGA
* *
327942 TCTTAGAATAAACTTTATATCCTTTCTCTTGAGA
1 TCTTACAACAAACTTTATATCCTTTCTCTTGAGA
327976 TCT
1 TCT
327979 GCATATGACT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (34 bp):
TCTTACAACAAACTTTATATCCTTTCTCTTGAGA
Found at i:329991 original size:28 final size:28
Alignment explanation
Indices: 329959--330091 Score: 130
Period size: 28 Copynumber: 4.8 Consensus size: 28
329949 AAAATAACAG
* *
329959 TCTTTCGAGTCAAAATATAGAATAATGC
1 TCTTTCGAGTCAAAATACAGAGTAATGC
*
329987 TCTTTCGAGAT-AGAATACAGAGTAACT-C
1 TCTTTCGAG-TCAAAATACAGAGTAA-TGC
**
330015 TCTTTCGAG-CTAAAATACAGAGTAACAC
1 TCTTTCGAGTC-AAAATACAGAGTAATGC
*
330043 TCTTTCG-GGCAAGAATACAGAGTAATGC
1 TCTTTCGAGTCAA-AATACAGAGTAATGC
* *
330071 TCTTTCGAGCCAGAATACAGA
1 TCTTTCGAGTCAAAATACAGA
330092 ATATCGCTCT
Statistics
Matches: 88, Mismatches: 9, Indels: 16
0.78 0.08 0.14
Matches are distributed among these distances:
27 3 0.03
28 80 0.91
29 5 0.06
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (28 bp):
TCTTTCGAGTCAAAATACAGAGTAATGC
Found at i:330030 original size:56 final size:56
Alignment explanation
Indices: 329959--330094 Score: 161
Period size: 56 Copynumber: 2.4 Consensus size: 56
329949 AAAATAACAG
* **
329959 TCTTTCGAG-TCAAAATATAGAATAATGCTCTTTCGAG-ATAGAATACAGAGTAACT-C
1 TCTTTCGAGCT-AAAATACAGAATAACACTCTTTCGAGCA-AGAATACAGAGTAA-TGC
* *
330015 TCTTTCGAGCTAAAATACAGAGTAACACTCTTTCGGGCAAGAATACAGAGTAATGC
1 TCTTTCGAGCTAAAATACAGAATAACACTCTTTCGAGCAAGAATACAGAGTAATGC
* *
330071 TCTTTCGAGCCAGAATACAGAATA
1 TCTTTCGAGCTAAAATACAGAATA
330095 TCGCTCTGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
55 1 0.01
56 66 0.96
57 2 0.03
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (56 bp):
TCTTTCGAGCTAAAATACAGAATAACACTCTTTCGAGCAAGAATACAGAGTAATGC
Found at i:336010 original size:3 final size:3
Alignment explanation
Indices: 335997--336033 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
335987 TTTAAAATAA
* *
335997 AAG AGG AAG AAG AAG AAG AAG AAG AAG AAG AAA AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
336034 GAAAGTTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:338413 original size:100 final size:100
Alignment explanation
Indices: 338303--338538 Score: 280
Period size: 100 Copynumber: 2.4 Consensus size: 100
338293 CATAAAATCA
* * * * * *
338303 TATATCCCTGAAGTTACAG-GGATCAGATTAAAACTACAATAGCAAATCTTGATCTATCTGACGT
1 TATACCCCTGAAGTTACAGTGGGTCAGATTAAAACTACAAAAGCAAATC-TAATCTACCTGAAGT
*
338367 TGCAGTAGAGCAAGAT-GTGTCTACAACATCAGATCT
65 TGCAGTAGAGCAAGATAGAG-CTACAACATCAGATCT
* ** * *
338403 TATACCCCTGAAGTTACAGTGGGTC-GAATTGAAGTTATAAAAGCAAATCTAATCTCCCTGAAGT
1 TATACCCCTGAAGTTACAGTGGGTCAG-ATTAAAACTACAAAAGCAAATCTAATCTACCTGAAGT
* *
338467 TGCAGTGGAGCAAGATAGAGCTACGACATCAGATCT
65 TGCAGTAGAGCAAGATAGAGCTACAACATCAGATCT
* *
338503 TATACCCTTGAAGTTATAGTGGGTCAGATTAAAACT
1 TATACCCCTGAAGTTACAGTGGGTCAGATTAAAACT
338539 TATAGTGGGT
Statistics
Matches: 113, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
100 89 0.79
101 24 0.21
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (100 bp):
TATACCCCTGAAGTTACAGTGGGTCAGATTAAAACTACAAAAGCAAATCTAATCTACCTGAAGTT
GCAGTAGAGCAAGATAGAGCTACAACATCAGATCT
Found at i:338544 original size:22 final size:22
Alignment explanation
Indices: 338516--338560 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
338506 ACCCTTGAAG
338516 TTATAGTGGGTCAGATTAAAAC
1 TTATAGTGGGTCAGATTAAAAC
338538 TTATAGTGGGTCAGATTAAAAC
1 TTATAGTGGGTCAGATTAAAAC
338560 T
1 T
338561 ACATTAGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (22 bp):
TTATAGTGGGTCAGATTAAAAC
Found at i:343060 original size:16 final size:18
Alignment explanation
Indices: 343034--343067 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
343024 ATTTAATTTC
343034 TAAAGTAAAAAA-AGAAA
1 TAAAGTAAAAAAGAGAAA
343051 TAAA-TAAAAAAGAGAAA
1 TAAAGTAAAAAAGAGAAA
343068 AGGGTAGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (18 bp):
TAAAGTAAAAAAGAGAAA
Found at i:344223 original size:96 final size:96
Alignment explanation
Indices: 344046--344230 Score: 241
Period size: 96 Copynumber: 1.9 Consensus size: 96
344036 TTGGGAGATG
* *
344046 TTCGATTATCTTGATTTGAAGAAAGGTTCCACCTAGTAAGTTAAGGCGCAAATTTTCAGAATCGA
1 TTCGATTATCTTGATTTGAAGAAAGATTCCACCTAGTAAGTTAAGGCGCAAATTTTCAAAATCGA
* * * *
344111 AGATAAGGAAACATTGCCTTGATTAAGGGTA
66 AAAAAAAGAAACATTGCCTCGATTAAGGGTA
* *
344142 TTCGATTAT-TTCGATTTGAAGAGAA-ATTGCACCTAGTAAGTTAAGGCGCAAATTTTTAAAACT
1 TTCGATTATCTT-GATTTGAAGA-AAGATTCCACCTAGTAAGTTAAGGCGCAAATTTTCAAAA-T
*
344205 CGAAAAAAAAG-AATATTGCCTCGATT
63 CGAAAAAAAAGAAACATTGCCTCGATT
344231 TTAAAGTTTT
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
95 2 0.03
96 64 0.83
97 11 0.14
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (96 bp):
TTCGATTATCTTGATTTGAAGAAAGATTCCACCTAGTAAGTTAAGGCGCAAATTTTCAAAATCGA
AAAAAAAGAAACATTGCCTCGATTAAGGGTA
Found at i:344793 original size:59 final size:59
Alignment explanation
Indices: 344692--345039 Score: 396
Period size: 59 Copynumber: 5.9 Consensus size: 59
344682 GTTTCAAGGT
* ** * * *
344692 TAAAAATGGAATTTTT-GAAGGCTCGAGGGT-AAAAATGTAATTTTTAGAAGTTCGGGGG
1 TAAAAATGTAATTTTTGGAAGTTTTG-GGGTCAAAAATGGAATTTTTGGAAGTTCGGGGG
* * * **
344750 TAAAAATGTAAATTTTGGAAGTTTTGGGGTCAATAATGAAATTTTTGGAAGTTCGGCAG
1 TAAAAATGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGAATTTTTGGAAGTTCGGGGG
* * * *
344809 TAAAAATGTAATTTTTGGAAGTTTTAGGGTTAAAAATGGAATTTATGGAAGTTCGAGGG
1 TAAAAATGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGAATTTTTGGAAGTTCGGGGG
* * ** * *
344868 TAAAAATATAATTTTTGGAAGTTTCGTAGTCAAAAATGGAATTTTTAGAAGTTCGAGGG
1 TAAAAATGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGAATTTTTGGAAGTTCGGGGG
* *
344927 TAAAAATGGAATTTTTGGAAGTTTTAGGGTCAAAAATGGAATTTTTGGAAGTTCGGGGG
1 TAAAAATGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGAATTTTTGGAAGTTCGGGGG
* * * * *
344986 TAAAAATATAATATCTGGATA-TTTTGAGGTCAAAAATGAAATTTTTGGACAGTT
1 TAAAAATGTAATTTTTGGA-AGTTTTGGGGTCAAAAATGGAATTTTTGGA-AGTT
345040 TAAGGGCCTT
Statistics
Matches: 244, Mismatches: 42, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
58 18 0.07
59 221 0.91
60 5 0.02
ACGTcount: A:0.36, C:0.04, G:0.25, T:0.35
Consensus pattern (59 bp):
TAAAAATGTAATTTTTGGAAGTTTTGGGGTCAAAAATGGAATTTTTGGAAGTTCGGGGG
Found at i:344872 original size:118 final size:118
Alignment explanation
Indices: 344692--345039 Score: 438
Period size: 118 Copynumber: 2.9 Consensus size: 118
344682 GTTTCAAGGT
* ** * *
344692 TAAAAATGGAATTTTT-GAAGGCTCGAGGG-TAAAAATGTAATTTTTAGAAGTTCGGGGGTAAAA
1 TAAAAATGGAATTTTTGGAA-GTTTTAGGGTTAAAAATGGAATTTTTGGAAGTTCGGGGGTAAAA
* * *
344755 ATGTAAATTTTGGAAGTTTTGGGGTCAATAATGAAATTTTTGGAAGTTCG-GCAG
65 ATATAAATTTTGGAAGTTTTGAGGTCAAAAATGAAATTTTTGGAAGTTCGAG-AG
* * *
344809 TAAAAATGTAATTTTTGGAAGTTTTAGGGTTAAAAATGGAATTTATGGAAGTTCGAGGGTAAAAA
1 TAAAAATGGAATTTTTGGAAGTTTTAGGGTTAAAAATGGAATTTTTGGAAGTTCGGGGGTAAAAA
* * * * *
344874 TATAATTTTTGGAAGTTTCGTA-GTCAAAAATGGAATTTTTAGAAGTTCGAGGG
66 TATAAATTTTGGAAGTTTTG-AGGTCAAAAATGAAATTTTTGGAAGTTCGAGAG
*
344927 TAAAAATGGAATTTTTGGAAGTTTTAGGGTCAAAAATGGAATTTTTGGAAGTTCGGGGGTAAAAA
1 TAAAAATGGAATTTTTGGAAGTTTTAGGGTTAAAAATGGAATTTTTGGAAGTTCGGGGGTAAAAA
*
344992 TAT-AATATCTGGATA-TTTTGAGGTCAAAAATGAAATTTTTGGACAGTT
66 TATAAAT-TTTGGA-AGTTTTGAGGTCAAAAATGAAATTTTTGGA-AGTT
345040 TAAGGGCCTT
Statistics
Matches: 198, Mismatches: 25, Indels: 14
0.84 0.11 0.06
Matches are distributed among these distances:
117 24 0.12
118 168 0.85
119 6 0.03
ACGTcount: A:0.36, C:0.04, G:0.25, T:0.35
Consensus pattern (118 bp):
TAAAAATGGAATTTTTGGAAGTTTTAGGGTTAAAAATGGAATTTTTGGAAGTTCGGGGGTAAAAA
TATAAATTTTGGAAGTTTTGAGGTCAAAAATGAAATTTTTGGAAGTTCGAGAG
Found at i:345004 original size:29 final size:29
Alignment explanation
Indices: 344635--344997 Score: 286
Period size: 29 Copynumber: 12.4 Consensus size: 29
344625 AATCGAGATA
* *
344635 AAAAATGAAATTTTTGGACA-TTCGAGGGT
1 AAAAATGTAATTTTTGGA-AGTTCGGGGGT
* * ** *
344664 -GAAATAGTAA-TTTTGAAAGTTTCAAGGTT
1 AAAAAT-GTAATTTTTGGAAG-TTCGGGGGT
* * *
344693 AAAAATGGAATTTTT-GAAGGCTCGAGGGT
1 AAAAATGTAATTTTTGGAA-GTTCGGGGGT
*
344722 AAAAATGTAATTTTTAGAAGTTCGGGGGT
1 AAAAATGTAATTTTTGGAAGTTCGGGGGT
* **
344751 AAAAATGTAAATTTTGGAAGTTTTGGGGT
1 AAAAATGTAATTTTTGGAAGTTCGGGGGT
* * **
344780 CAATAATGAAATTTTTGGAAGTTCGGCAGT
1 -AAAAATGTAATTTTTGGAAGTTCGGGGGT
** *
344810 AAAAATGTAATTTTTGGAAGTTTTAGGGTT
1 AAAAATGTAATTTTTGGAAG-TTCGGGGGT
* * *
344840 AAAAATGGAATTTATGGAAGTTCGAGGGT
1 AAAAATGTAATTTTTGGAAGTTCGGGGGT
* **
344869 AAAAATATAATTTTTGGAAGTTTC-GTAGT
1 AAAAATGTAATTTTTGGAAG-TTCGGGGGT
* * *
344898 CAAAAATGGAATTTTTAGAAGTTCGAGGGT
1 -AAAAATGTAATTTTTGGAAGTTCGGGGGT
* ***
344928 AAAAATGGAATTTTTGGAAGTTTTAGGGT
1 AAAAATGTAATTTTTGGAAGTTCGGGGGT
*
344957 CAAAAATGGAATTTTTGGAAGTTCGGGGGT
1 -AAAAATGTAATTTTTGGAAGTTCGGGGGT
*
344987 AAAAATATAAT
1 AAAAATGTAAT
344998 ATCTGGATAT
Statistics
Matches: 263, Mismatches: 58, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
27 1 0.00
28 10 0.04
29 148 0.56
30 104 0.40
ACGTcount: A:0.36, C:0.04, G:0.25, T:0.34
Consensus pattern (29 bp):
AAAAATGTAATTTTTGGAAGTTCGGGGGT
Found at i:346916 original size:17 final size:16
Alignment explanation
Indices: 346890--346937 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
346880 GTTCTAAATC
**
346890 AATTTGAATTTTAATTA
1 AATTT-AATTTTAAACA
*
346907 AATTTAAATTTAAAACA
1 AATTT-AATTTTAAACA
346924 AATTTAATTTTAAA
1 AATTTAATTTTAAA
346938 AGATAAATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 8 0.31
17 18 0.69
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (16 bp):
AATTTAATTTTAAACA
Found at i:347683 original size:193 final size:194
Alignment explanation
Indices: 347340--348120 Score: 877
Period size: 206 Copynumber: 3.9 Consensus size: 194
347330 TGACTTGACC
* * * ** * *
347340 TTCTTCTTAGTATCTCATCAGGAAGACGATCGCATCACTTGTTTTGATCCA-TTTCTCTGTATTT
1 TTCTTCTTAGTATCTCATCAGGAAGATGACCGCGTCACTTGTTTCAAT-CAGCTTCTCTGTATCT
* * *
347404 CATCAGAAAGACGAATTTGGTTCACTTCTCCGTATCTCATCAGGAAGCTAACCTCTTTATTGCTT
65 CATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCT-TTTATTACTT
*
347469 CACCCTGCTTCTCAGTATCTCATCAGGAAGCTGGGG-TCGAAGATTTGT-TCGCATTGAGTTGGT
129 CAACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGTCTCGCATTGAGTTGGT
347532 A
194 A
* * * *
347533 TACTTCTTTGTATCTCATCAGGAAGATGACTGCCTCACTTGTTTCAATCAGCTTCTCTGTATCTC
1 TTCTTCTTAGTATCTCATCAGGAAGATGACCGCGTCACTTGTTTCAATCAGCTTCTCTGTATCTC
*
347598 ATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATTAGGAAGCTAACCATTTTATTACTTC
66 ATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACC-TTTTATTACTTC
* * *
347663 AACCTGCTTCTCAATATCTCATCAGGAAGCTGGGGTTCGAGGATTTTCTCACATCGAGCATGGGT
130 AACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGA-TTTGT--C-TC--GCA-----
* *
347728 TTGATTTGGTC
184 TTGAGTTGGTA
* * ** *
347739 TTCTTCTCAGTGTCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTC
1 TTCTTCTTAGTATCTCATCAGGAAGATGACCGCGTCACTTGTTTCAATCAGCTTCTCTGTATCTC
* *
347804 AACAGGAAGACGAATTTGGTTCACTTCTCAATATCTCATCAGGAAGCTAACCATTTTATTACTTC
66 ATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACC-TTTTATTACTTC
* *
347869 AACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAGGATTTGCTCACATCGAGCGTGGGT
130 AACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTG-T--C-TC--GC-----A
*
347934 TTGATTTGGTA
184 TTGAGTTGGTA
* * ** *
347945 TTCTTCTCAGTATCTCATAAGGAAGATGACCGCGTCGTTTGTTTCAATTC-GCTTCTCTATATCT
1 TTCTTCTTAGTATCTCATCAGGAAGATGACCGCGTCACTTGTTTCAA-TCAGCTTCTCTGTATCT
* * * *
348009 CATCAGGAAAATGAATTTGGTCCACTTCTCAGTATCTTATCAGGAAGCTAACCTTTTATTACTTC
65 CATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTACTTC
* * * * * *
348074 GACCAGCTTCTCAGTGTCTCATCAAGAAGATGGGGTTCAAAGATTTG
130 AACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTG
348121 CTCACATCGA
Statistics
Matches: 514, Mismatches: 52, Indels: 32
0.86 0.09 0.05
Matches are distributed among these distances:
192 2 0.00
193 144 0.28
194 7 0.01
195 4 0.01
199 2 0.00
201 3 0.01
205 55 0.11
206 295 0.57
207 2 0.00
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.35
Consensus pattern (194 bp):
TTCTTCTTAGTATCTCATCAGGAAGATGACCGCGTCACTTGTTTCAATCAGCTTCTCTGTATCTC
ATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTACTTCA
ACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGTCTCGCATTGAGTTGGTA
Found at i:347899 original size:206 final size:206
Alignment explanation
Indices: 347542--348191 Score: 1032
Period size: 206 Copynumber: 3.2 Consensus size: 206
347532 ATACTTCTTT
* * ** *
347542 GTATCTCATCAGGAAGATGACTGCCTCACTTGTTTCAATCAGCTTCTCTGTATCTCATCAGGAAG
1 GTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAG
*
347607 ACGAATTTGGTTCACTTCTCAGTATCTCATTAGGAAGCTAACCATTTTATTACTTCAACCTGCTT
66 ACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTACTTCAACCTGCTT
* * *
347672 CTCAATATCTCATCAGGAAGCTGGGGTTCGAGGATTTTCTCACATCGAGCATGGGTTTGATTTGG
131 CTCAGTATCTCATCAGGAAGCTGGGGTTCGAGGATTTGCTCACATCGAGCGTGGGTTTGATTTGG
347737 TCTTCTTCTCA
196 TCTTCTTCTCA
* *
347748 GTGTCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTCAACAGGAAG
1 GTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAG
*
347813 ACGAATTTGGTTCACTTCTCAATATCTCATCAGGAAGCTAACCATTTTATTACTTCAACCTGCTT
66 ACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTACTTCAACCTGCTT
347878 CTCAGTATCTCATCAGGAAGCTGGGGTTCGAGGATTTGCTCACATCGAGCGTGGGTTTGATTTGG
131 CTCAGTATCTCATCAGGAAGCTGGGGTTCGAGGATTTGCTCACATCGAGCGTGGGTTTGATTTGG
*
347943 TATTCTTCTCA
196 TCTTCTTCTCA
* * * *
347954 GTATCTCATAAGGAAGATGACCGCGTCGTTTGTTTCAATTCGCTTCTCTATATCTCATCAGGAAA
1 GTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAG
* * * * *
348019 ATGAATTTGGTCCACTTCTCAGTATCTTATCAGGAAGCTAACC-TTTTATTACTTCGACCAGCTT
66 ACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTACTTCAACCTGCTT
* * * * *
348083 CTCAGTGTCTCATCAAGAAGATGGGGTTCAAAGATTTGCTCACATCGAGCGTGGGTTTGATTTGG
131 CTCAGTATCTCATCAGGAAGCTGGGGTTCGAGGATTTGCTCACATCGAGCGTGGGTTTGATTTGG
348148 TCTTCTTCTCA
196 TCTTCTTCTCA
* *
348159 GTATCTCATCAAGAAGATGACCGCGCCGTTTGT
1 GTATCTCATCAGGAAGATGACCGCGTCGTTTGT
348192 GGATAATCGC
Statistics
Matches: 410, Mismatches: 34, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
205 119 0.29
206 291 0.71
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (206 bp):
GTATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAG
ACGAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTACTTCAACCTGCTT
CTCAGTATCTCATCAGGAAGCTGGGGTTCGAGGATTTGCTCACATCGAGCGTGGGTTTGATTTGG
TCTTCTTCTCA
Found at i:358361 original size:96 final size:96
Alignment explanation
Indices: 358184--358368 Score: 268
Period size: 96 Copynumber: 1.9 Consensus size: 96
358174 GAAAAAGATG
* *
358184 TTCGATTATCTCGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGGCGTAAATTTTCAGAATCGA
1 TTCGATTATCTCGATTTGAAGAAAGATTGCACCTAGTAAGTTAAGGCGCAAATTTTCAGAATCGA
**
358249 AGATAAGGAAACATTGCCTCGATTAAGGGTA
66 AGATAAAAAAACATTGCCTCGATTAAGGGTA
*
358280 TTCGATTATTTCGATTTGAAGAGAA-ATTGCACCTAGTAAGTTAAGGCGCAAATTTTC-GAAACT
1 TTCGATTATCTCGATTTGAAGA-AAGATTGCACCTAGTAAGTTAAGGCGCAAATTTTCAG-AA-T
*
358343 CGAA-ATAAAAAAATATTGCCTCGATT
63 CGAAGATAAAAAAACATTGCCTCGATT
358369 TTAAAGTTTT
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
95 1 0.01
96 72 0.90
97 7 0.09
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (96 bp):
TTCGATTATCTCGATTTGAAGAAAGATTGCACCTAGTAAGTTAAGGCGCAAATTTTCAGAATCGA
AGATAAAAAAACATTGCCTCGATTAAGGGTA
Found at i:358613 original size:28 final size:28
Alignment explanation
Indices: 358582--358642 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
358572 AAAATGAGAC
* *
358582 TTTGGA-TACCCGGGGGTAAAATGGTAAT
1 TTTGGACT-CCCGAGGGTAAAATAGTAAT
*
358610 TTTGGACTCTCGAGGGTAAAATAGTAAT
1 TTTGGACTCCCGAGGGTAAAATAGTAAT
358638 TTTGG
1 TTTGG
358643 GAAAGTTTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 28 0.97
29 1 0.03
ACGTcount: A:0.28, C:0.10, G:0.30, T:0.33
Consensus pattern (28 bp):
TTTGGACTCCCGAGGGTAAAATAGTAAT
Found at i:358720 original size:59 final size:59
Alignment explanation
Indices: 358609--358817 Score: 158
Period size: 59 Copynumber: 3.5 Consensus size: 59
358599 AAAATGGTAA
* * * * * * *
358609 TTTTGGACTCTCGAGGGTAAAAT-AGTAATTTTGGGAAAGTTTGGGGTTAAAAATGAAAT
1 TTTTAGACACTCGAGGGTAAAATGA-TAATTTTAGGAAAGATCGGGATCAAAAATGAAAT
* * *
358668 TTTTATACACTCGAGGGTAAAATGATAACTTTT-GAAAAGATCGGGATCAAAAACGAAAT
1 TTTTAGACACTCGAGGGTAAAATGATAA-TTTTAGGAAAGATCGGGATCAAAAATGAAAT
* * * * * *
358727 TTTTGGACA-TCCGAGTGTAAAATGGTAATTTTTAGGAAA-ATCGAGATCTAAAATGGAAT
1 TTTTAGACACT-CGAGGGTAAAATGATAA-TTTTAGGAAAGATCGGGATCAAAAATGAAAT
* * * *
358786 TTTTGGACATTCGGGGGTGAAATTG-TAATTTT
1 TTTTAGACACTCGAGGGT-AAAATGATAATTTT
358818 TGAAAGTTTT
Statistics
Matches: 122, Mismatches: 22, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
58 5 0.04
59 102 0.84
60 15 0.12
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.33
Consensus pattern (59 bp):
TTTTAGACACTCGAGGGTAAAATGATAATTTTAGGAAAGATCGGGATCAAAAATGAAAT
Found at i:358756 original size:29 final size:28
Alignment explanation
Indices: 358724--358819 Score: 86
Period size: 29 Copynumber: 3.3 Consensus size: 28
358714 TCAAAAACGA
358724 AATTTTTGGACATCCGAGTGTAAAATGGT
1 AATTTTTGGACAT-CGAGTGTAAAATGGT
* *
358753 AATTTTTAGGAAAATCGAGATCTAAAATGG-
1 AATTTTT-GG-ACATCGAG-TGTAAAATGGT
* * * *
358783 AATTTTTGGACATTCGGGGGTGAAATTGT
1 AATTTTTGGACA-TCGAGTGTAAAATGGT
358812 AATTTTTG
1 AATTTTTG
358820 AAAGTTTTGA
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
28 8 0.15
29 21 0.39
30 13 0.24
31 12 0.22
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (28 bp):
AATTTTTGGACATCGAGTGTAAAATGGT
Found at i:358839 original size:59 final size:59
Alignment explanation
Indices: 358776--359154 Score: 414
Period size: 59 Copynumber: 6.5 Consensus size: 59
358766 ATCGAGATCT
* * * * *
358776 AAAATGGAATTTTTGGACA-TTCGGGGGTGAAATTGTAATTTTTGAAAGTTTTGAGGTTA
1 AAAATGGAATTTTTGGA-AGTTTGAGGGTAAAAATATAATTTTTGAAAGTTTTGAGGTTA
* * * * *
358835 AAAATGGAATTTTTGGAAGTTTAAGGGTAAAAATGTGATTTTTGGAAGTTTCGAGGTTA
1 AAAATGGAATTTTTGGAAGTTTGAGGGTAAAAATATAATTTTTGAAAGTTTTGAGGTTA
* * * *
358894 AAAATGGAATTTTTGAAAGTTTGAGGGTAAAAATGTAATTTTTGGAAGTTTTGAGGTCA
1 AAAATGGAATTTTTGGAAGTTTGAGGGTAAAAATATAATTTTTGAAAGTTTTGAGGTTA
* * * *
358953 AAAATGGAATTTTTTGAAGTTTGGGGGT-AAAATATAATTTTTGGAAGTTTTGGGGTT-
1 AAAATGGAATTTTTGGAAGTTTGAGGGTAAAAATATAATTTTTGAAAGTTTTGAGGTTA
* * **
359010 AAATTGGAATTTTTTGAAGTTT-AGGGGTAAAAATATAATTTTCAAAAGTTTT-AGGGTTA
1 AAAATGGAATTTTTGGAAGTTTGA-GGGTAAAAATATAATTTTTGAAAGTTTTGA-GGTTA
* * * *
359069 AAAATGGAATTTTTGGAAGTTCGACGGTAAAAATATAATATTTGGAAA-TTTT-AGGGTCA
1 AAAATGGAATTTTTGGAAGTTTGAGGGTAAAAATATAAT-TTTTGAAAGTTTTGA-GGTTA
359128 AAAATGGAATTTTTGGATAGTTT-AGGG
1 AAAATGGAATTTTTGGA-AGTTTGAGGG
359155 GCCTTTAAGG
Statistics
Matches: 278, Mismatches: 34, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
57 25 0.09
58 51 0.18
59 191 0.69
60 11 0.04
ACGTcount: A:0.34, C:0.02, G:0.25, T:0.38
Consensus pattern (59 bp):
AAAATGGAATTTTTGGAAGTTTGAGGGTAAAAATATAATTTTTGAAAGTTTTGAGGTTA
Found at i:358848 original size:30 final size:30
Alignment explanation
Indices: 358812--359150 Score: 297
Period size: 29 Copynumber: 11.5 Consensus size: 30
358802 GTGAAATTGT
*
358812 AATTTTTGAAAGTTTTGAGGTTAAAAATGG
1 AATTTTTGGAAGTTTTGAGGTTAAAAATGG
* *
358842 AATTTTTGGAAG-TTTAAGGGTAAAAATGTG
1 AATTTTTGGAAGTTTTGAGGTTAAAAATG-G
*
358872 -ATTTTTGGAAGTTTCGAGGTTAAAAATGG
1 AATTTTTGGAAGTTTTGAGGTTAAAAATGG
* * *
358901 AATTTTTGAAAG-TTTGAGGGTAAAAATGT
1 AATTTTTGGAAGTTTTGAGGTTAAAAATGG
*
358930 AATTTTTGGAAGTTTTGAGGTCAAAAATGG
1 AATTTTTGGAAGTTTTGAGGTTAAAAATGG
* * *
358960 AATTTTTTGAAG-TTTGGGGGTAAAATAT--
1 AATTTTTGGAAGTTTTGAGGTTAAAA-ATGG
* *
358988 AATTTTTGGAAGTTTTGGGGTT-AAATTGG
1 AATTTTTGGAAGTTTTGAGGTTAAAAATGG
* * * **
359017 AATTTTTTGAAGTTTAG-GGGTAAAAATAT
1 AATTTTTGGAAGTTTTGAGGTTAAAAATGG
***
359046 AATTTTCAAAAGTTTT-AGGGTTAAAAATGG
1 AATTTTTGGAAGTTTTGA-GGTTAAAAATGG
* **
359076 AATTTTTGGAAG-TTCGACGG-TAAAAATAT
1 AATTTTTGGAAGTTTTGA-GGTTAAAAATGG
* * *
359105 AATATTTGGAAATTTT-AGGGTCAAAAATGG
1 AATTTTTGGAAGTTTTGA-GGTTAAAAATGG
359135 AATTTTTGGATAGTTT
1 AATTTTTGGA-AGTTT
359151 AGGGGCCTTT
Statistics
Matches: 244, Mismatches: 50, Indels: 29
0.76 0.15 0.09
Matches are distributed among these distances:
27 1 0.00
28 17 0.07
29 122 0.50
30 100 0.41
31 4 0.02
ACGTcount: A:0.35, C:0.02, G:0.24, T:0.39
Consensus pattern (30 bp):
AATTTTTGGAAGTTTTGAGGTTAAAAATGG
Found at i:359152 original size:30 final size:28
Alignment explanation
Indices: 358776--359154 Score: 289
Period size: 29 Copynumber: 12.9 Consensus size: 28
358766 ATCGAGATCT
** *
358776 AAAATGGAATTTTTGGACA-TTCGGGGGTG
1 AAAATGGAATTTTTGGA-AGTT-TAGGGTA
* * * *
358805 AAATTGTAATTTTTGAAAGTTTTGAGGTTA
1 AAAATGGAATTTTTGGAAG-TTT-AGGGTA
358835 AAAATGGAATTTTTGGAAGTTTAAGGGTA
1 AAAATGGAATTTTTGGAAGTTT-AGGGTA
*
358864 AAAATGTG-ATTTTTGGAAGTTTCGAGGTTA
1 AAAATG-GAATTTTTGGAAGTTT--AGGGTA
*
358894 AAAATGGAATTTTTGAAAGTTTGAGGGTA
1 AAAATGGAATTTTTGGAAGTTT-AGGGTA
* *
358923 AAAATGTAATTTTTGGAAGTTTTGAGGTCA
1 AAAATGGAATTTTTGGAAGTTTAG-GGT-A
* *
358953 AAAATGGAATTTTTTGAAGTTTGGGGGTA
1 AAAATGGAATTTTTGGAAGTTT-AGGGTA
* *
358982 AAATAT--AATTTTTGGAAGTTTTGGGGTT
1 AAA-ATGGAATTTTTGGAAG-TTTAGGGTA
* *
359010 AAATTGGAATTTTTTGAAGTTTAGGGGTA
1 AAAATGGAATTTTTGGAAGTTTA-GGGTA
** ***
359039 AAAATATAATTTTCAAAAGTTTTAGGGTTA
1 AAAATGGAATTTTTGGAAG-TTTAGGG-TA
* *
359069 AAAATGGAATTTTTGGAAGTTCGACGGTA
1 AAAATGGAATTTTTGGAAGTT-TAGGGTA
** * *
359098 AAAATATAATATTTGGAAATTTTAGGGTCA
1 AAAATGGAATTTTTGG-AAGTTTAGGGT-A
359128 AAAATGGAATTTTTGGATAGTTTAGGG
1 AAAATGGAATTTTTGGA-AGTTTAGGG
359155 GCCTTTAAGG
Statistics
Matches: 279, Mismatches: 51, Indels: 39
0.76 0.14 0.11
Matches are distributed among these distances:
27 1 0.00
28 24 0.09
29 132 0.47
30 121 0.43
31 1 0.00
ACGTcount: A:0.34, C:0.02, G:0.25, T:0.38
Consensus pattern (28 bp):
AAAATGGAATTTTTGGAAGTTTAGGGTA
Found at i:360961 original size:6 final size:6
Alignment explanation
Indices: 360946--360993 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
360936 GTTCTAAATC
* **
360946 AATTTA AATTTT AA-TTA AATTTA AATTTA AA-ACA AATTTA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
360992 AA
1 AA
360994 AATAAATTTG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
5 7 0.21
6 27 0.79
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (6 bp):
AATTTA
Found at i:360966 original size:17 final size:17
Alignment explanation
Indices: 360946--360994 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
360936 GTTCTAAATC
* **
360946 AATTTAAATTTTAATTA
1 AATTTAAATTTAAAACA
360963 AATTTAAATTTAAAACA
1 AATTTAAATTTAAAACA
360980 AATTTAAATTTAAAA
1 AATTTAAATTTAAAA
360995 ATAAATTTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
AATTTAAATTTAAAACA
Found at i:360987 original size:34 final size:35
Alignment explanation
Indices: 360919--360990 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
360909 TGTCTTGGAC
* * *
360919 TTTTAATTTAATATTAAGTTCTAAATCAATTTAAA
1 TTTTAATTAAATATTAAATTCTAAAACAATTTAAA
360954 TTTTAATTAAAT-TTAAATT-TAAAACAAATTTAAA
1 TTTTAATTAAATATTAAATTCTAAAAC-AATTTAAA
360988 TTT
1 TTT
360991 AAAAATAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 5 0.15
34 17 0.52
35 11 0.33
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (35 bp):
TTTTAATTAAATATTAAATTCTAAAACAATTTAAA
Found at i:366233 original size:18 final size:18
Alignment explanation
Indices: 366192--366229 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
366182 CCATGTCAGC
366192 AAAA-AAATTAAACTTAA
1 AAAATAAATTAAACTTAA
*
366209 AATATAAATTAAA-TTAA
1 AAAATAAATTAAACTTAA
366226 AAAA
1 AAAA
366230 ATAATATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAATAAATTAAACTTAA
Found at i:366428 original size:11 final size:11
Alignment explanation
Indices: 366412--366436 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
366402 AAAGGAAAAT
366412 TTTGAGGTATG
1 TTTGAGGTATG
366423 TTTGAGGTATG
1 TTTGAGGTATG
366434 TTT
1 TTT
366437 TCAAAAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.52
Consensus pattern (11 bp):
TTTGAGGTATG
Found at i:367060 original size:12 final size:13
Alignment explanation
Indices: 367040--367073 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
367030 TTGGTAATCA
367040 TTTTCATTTTA-C
1 TTTTCATTTTATC
*
367052 TTTTAATTTTATC
1 TTTTCATTTTATC
367065 TTTTCATTT
1 TTTTCATTT
367074 CATTTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTCATTTTATC
Found at i:368683 original size:3 final size:3
Alignment explanation
Indices: 368675--368705 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
368665 AGCTTTAGGG
368675 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
368706 CATCATATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:370681 original size:12 final size:11
Alignment explanation
Indices: 370664--370701 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
370654 TTTACCTTTA
370664 TATTTTATTATT
1 TATTTTATT-TT
370676 TATTTTA-TTT
1 TATTTTATTTT
370686 TATTTTTATTTT
1 TA-TTTTATTTT
370698 TATT
1 TATT
370702 GATTTTCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 4 0.17
11 8 0.33
12 12 0.50
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (11 bp):
TATTTTATTTT
Found at i:370701 original size:17 final size:17
Alignment explanation
Indices: 370664--370697 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
370654 TTTACCTTTA
370664 TATTTTATTATTTATTT
1 TATTTTATTATTTATTT
370681 TATTTTATT-TTTATTT
1 TATTTTATTATTTATTT
370697 T
1 T
370698 TATTGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TATTTTATTATTTATTT
Found at i:371237 original size:20 final size:22
Alignment explanation
Indices: 371200--371242 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
371190 CAATAAATGA
*
371200 TTTTAAAATTAATTAAATTATT
1 TTTTAAAATTAATAAAATTATT
371222 TTTTAAAA-T-ATAAAATTATT
1 TTTTAAAATTAATAAAATTATT
371242 T
1 T
371243 ATGGGTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
21 1 0.05
22 8 0.40
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTTAAAATTAATAAAATTATT
Found at i:371834 original size:34 final size:34
Alignment explanation
Indices: 371784--371848 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
371774 ACTTGGATGA
371784 TGAGAAGAAAAGGTGGTGTTAGATGGAAAAACGG
1 TGAGAAGAAAAGGTGGTGTTAGATGGAAAAACGG
*
371818 TGAGAAGAAGAA-GTGGTGTTGGATGGAAAAA
1 TGAGAAGAA-AAGGTGGTGTTAGATGGAAAAA
371849 TCGGGAAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 27 0.93
35 2 0.07
ACGTcount: A:0.42, C:0.02, G:0.38, T:0.18
Consensus pattern (34 bp):
TGAGAAGAAAAGGTGGTGTTAGATGGAAAAACGG
Found at i:371949 original size:16 final size:16
Alignment explanation
Indices: 371912--371951 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
371902 AAATTAAAGT
371912 TATTT-AATATTTTTA
1 TATTTAAATATTTTTA
*
371927 TATTTTAAATTTTTTTA
1 TA-TTTAAATATTTTTA
371944 TATTTAAA
1 TATTTAAA
371952 AAAATTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 2 0.09
16 9 0.41
17 11 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTAAATATTTTTA
Found at i:382508 original size:18 final size:18
Alignment explanation
Indices: 382485--382527 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
382475 TTTTCAATTG
382485 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTGTT
*
382503 TAATTAATTAAATTTGTT
1 TAATTAATTAAAATTGTT
382521 TAATTAA
1 TAATTAA
382528 AATCTTATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTGTT
Found at i:389899 original size:13 final size:13
Alignment explanation
Indices: 389883--389925 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
389873 CACCTGAAAG
*
389883 AAGAAAAAGAAAA
1 AAGAAAAACAAAA
389896 AAGAAAAGACAAAA
1 AAGAAAA-ACAAAA
*
389910 AAAATAAAACAAAA
1 AAGA-AAAACAAAA
389924 AA
1 AA
389926 AGGAGAGGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 7 0.27
14 16 0.62
15 3 0.12
ACGTcount: A:0.84, C:0.05, G:0.09, T:0.02
Consensus pattern (13 bp):
AAGAAAAACAAAA
Found at i:391004 original size:48 final size:49
Alignment explanation
Indices: 390952--391056 Score: 131
Period size: 49 Copynumber: 2.2 Consensus size: 49
390942 AACGACGAAT
* * * *
390952 CCGGTACCAT-GAAATGTGATGAAAAAGGTTGAGGCCGTAATGGCAAAC
1 CCGGTACCATAAAAATGTGAAGAAAAAGATTGAGACCGTAATGGCAAAC
* **
391000 CCGGTACCATAAAAATTTGAAGGGAAAGATTGAGACCGTAATGGCAAAC
1 CCGGTACCATAAAAATGTGAAGAAAAAGATTGAGACCGTAATGGCAAAC
*
391049 CCGATACC
1 CCGGTACC
391057 TTAGAAGATA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
48 10 0.21
49 38 0.79
ACGTcount: A:0.37, C:0.19, G:0.26, T:0.18
Consensus pattern (49 bp):
CCGGTACCATAAAAATGTGAAGAAAAAGATTGAGACCGTAATGGCAAAC
Found at i:391133 original size:50 final size:49
Alignment explanation
Indices: 390876--391354 Score: 337
Period size: 50 Copynumber: 9.7 Consensus size: 49
390866 AAGATATGAA
* * *
390876 GGGAATGGTTGAGGCCGCAACAGC--ACCCGATACCTTAGAAGATGTGAT
1 GGGAA-GGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTAAT
* * * * * *
390924 GGGGAGGATTGAGGCTGCAACGACGAATCCGGTACCAT-GAA-ATGTGAT
1 GGGAAGG-TTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTAAT
** * * * * * *
390972 GAAAAAGGTTGAGGCCGTAATGGCAAACCCGGTACCATA-AAAATTTGAA-
1 G-GGAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGT-AAT
* * * * * * *
391021 GGGAAAGATTGAGACCGTAATGGCAAACCCGATACCTTAGAAGATAAG-AAA
1 GGG-AAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGAT--GTAAT
* * * ** **
391072 GGAAATGTTGAGGCTGCAGGGGCGAACTTGGTACCTTAGAAGATGTAAT
1 GGGAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTAAT
* * * * *
391121 GGGAAGGATTGAGGCCACAACGGTGAACCCGGTACCAT-GAAGATATTAAA
1 GGGAAGG-TTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGAT-GTAAT
* * * *
391171 GGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTTACAAGATGTGAT
1 GGGAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTAAT
* * * *
391220 GGGAAAGGTTGAGGCCGCAACGGTGAACCCAGTACCAT-GAAGATGTAAA
1 GGG-AAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTAAT
* * *
391269 GGGAAAGGTTGAGGCCACAACGGCGAACTCGGTACCTTAGAAGATGTGAT
1 GGG-AAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTAAT
* * *
391319 GGGAAGGATTGAGGCCGCAACAGTGAATCCGGTACC
1 GGGAAGG-TTGAGGCCGCAACGGCGAACCCGGTACC
391355 ATGGATATAT
Statistics
Matches: 332, Mismatches: 80, Indels: 36
0.74 0.18 0.08
Matches are distributed among these distances:
47 2 0.01
48 52 0.16
49 129 0.39
50 147 0.44
51 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.18
Consensus pattern (49 bp):
GGGAAGGTTGAGGCCGCAACGGCGAACCCGGTACCTTAGAAGATGTAAT
Found at i:391163 original size:99 final size:98
Alignment explanation
Indices: 390864--391410 Score: 475
Period size: 99 Copynumber: 5.6 Consensus size: 98
390854 CCAAGGAACG
* * * * *
390864 TGAAGATATGAAGGGAATGGTTGAGGCCGCAACAGC--ACCCGATACCTTAGAAGATGTGATGGG
1 TGAAGATA-GAAAGGAAAGGTTGAGGCCGCAACGGCGAACTCGGTACCTTAGAAGATGTGATGGG
* * ** *
390927 GAGGATTGAGGCTGCAACGACGAATCCGGTACCA
65 AAGGATTGAGGCCGCAACGGTGAACCCGGTACCA
* * * * * * * * *
390961 TGAA-ATGTGATGAA--AAAGGTTGAGGCCGTAATGGCAAACCCGGTACCATA-AAAATTTGAAG
1 TGAAGAT-AGA--AAGGAAAGGTTGAGGCCGCAACGGCGAACTCGGTACCTTAGAAGATGTGATG
* * * * ** * *
391022 GGAAAGATTGAGACCGTAATGGCAAACCCGATACCT
63 GGAAGGATTGAGGCCGCAACGGTGAACCCGGTACCA
* * ** * *
391058 TAGAAGATAAGAAAGGAAATGTTGAGGCTGCAGGGGCGAACTTGGTACCTTAGAAGATGTAATGG
1 T-GAAGAT-AGAAAGGAAAGGTTGAGGCCGCAACGGCGAACTCGGTACCTTAGAAGATGTGATGG
*
391123 GAAGGATTGAGGCCACAACGGTGAACCCGGTACCA
64 GAAGGATTGAGGCCGCAACGGTGAACCCGGTACCA
* * * *
391158 TGAAGATATTAAAGGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTTACAAGATGTGATGGG
1 TGAAGATA-GAAAGGAAAGGTTGAGGCCGCAACGGCGAACTCGGTACCTTAGAAGATGTGATGGG
*
391223 AAAGG-TTGAGGCCGCAACGGTGAACCCAGTACCA
65 -AAGGATTGAGGCCGCAACGGTGAACCCGGTACCA
*
391257 TGAAGAT-GTAAAGGGAAAGGTTGAGGCCACAACGGCGAACTCGGTACCTTAGAAGATGTGATGG
1 TGAAGATAG-AAA-GGAAAGGTTGAGGCCGCAACGGCGAACTCGGTACCTTAGAAGATGTGATGG
* *
391321 GAAGGATTGAGGCCGCAACAGTGAATCCGGTACCA
64 GAAGGATTGAGGCCGCAACGGTGAACCCGGTACCA
* * * * * *
391356 TGGATATATA-AAAGGAAAGGTTAAGACCGTAACGGCAAAC-CTAGTACCTTAGAAG
1 T-GA-AGATAGAAAGGAAAGGTTGAGGCCGCAACGGCGAACTC-GGTACCTTAGAAG
391411 CACGAGGAGA
Statistics
Matches: 358, Mismatches: 73, Indels: 36
0.77 0.16 0.08
Matches are distributed among these distances:
96 21 0.06
97 40 0.11
98 24 0.07
99 226 0.63
100 44 0.12
101 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.18
Consensus pattern (98 bp):
TGAAGATAGAAAGGAAAGGTTGAGGCCGCAACGGCGAACTCGGTACCTTAGAAGATGTGATGGGA
AGGATTGAGGCCGCAACGGTGAACCCGGTACCA
Found at i:391199 original size:149 final size:147
Alignment explanation
Indices: 390877--391339 Score: 353
Period size: 149 Copynumber: 3.1 Consensus size: 147
390867 AGATATGAAG
* * ** * **
390877 GGAATGGTTGAGGCCGCAAC-AGC--ACCCGATACCTTAGAAGATGTG-ATGGGGAGGATTGAGG
1 GGAAAGGTTGAGGCCGCAACGA-CAAACCCGATACCTTACAAGATAAGAAAGGAAAGG-TTGAGG
* * * * * * ** ** * *
390938 CTGCAACGACGAATCCGGTACCATGAA-ATGTGATGAAAAAGGTTGAGGCCGTAATGGCAAACCC
64 CCGCAACGGCGAACCCAGTACCATGAAGATGTAAAGGGAAAGGTTGAGGCCACAACGGCGAACCC
* * *
391002 GGTACCATAAAAATTTGAAG
129 GGTACCATGAAGATTT-AAA
* * * * * * * *
391022 GGAAAGATTGAGACCGTAATGGCAAACCCGATACCTTAGAAGATAAGAAAGGAAATGTTGAGGCT
1 GGAAAGGTTGAGGCCGCAACGACAAACCCGATACCTTACAAGATAAGAAAGGAAAGGTTGAGGCC
** *** * * *
391087 GCAGGGGCGAACTTGGTACCTTAGAAGATGTAATGGG-AAGGATTGAGGCCACAACGGTGAACCC
66 GCAACGGCGAACCCAGTACCAT-GAAGATGTAAAGGGAAAGG-TTGAGGCCACAACGGCGAACCC
391151 GGTACCATGAAGATATTAAA
129 GGTACCATGAAGAT-TTAAA
* * ** **
391171 GGAAAGGTTGAGGCCGCAACGACGAACCCGGTACCTTACAAGATGTGATGGGAAAGGTTGAGGCC
1 GGAAAGGTTGAGGCCGCAACGACAAACCCGATACCTTACAAGATAAGAAAGGAAAGGTTGAGGCC
* *
391236 GCAACGGTGAACCCAGTACCATGAAGATGTAAAGGGAAAGGTTGAGGCCACAACGGCGAACTCGG
66 GCAACGGCGAACCCAGTACCATGAAGATGTAAAGGGAAAGGTTGAGGCCACAACGGCGAACCCGG
* * * *
391301 TACCTTAGAAGATGTGAT
131 TACCAT-GAAGATTTAAA
*
391319 GGGAAGGATTGAGGCCGCAAC
1 GGAAAGG-TTGAGGCCGCAAC
391340 AGTGAATCCG
Statistics
Matches: 248, Mismatches: 59, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
145 16 0.06
147 43 0.17
148 60 0.24
149 127 0.51
150 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.17
Consensus pattern (147 bp):
GGAAAGGTTGAGGCCGCAACGACAAACCCGATACCTTACAAGATAAGAAAGGAAAGGTTGAGGCC
GCAACGGCGAACCCAGTACCATGAAGATGTAAAGGGAAAGGTTGAGGCCACAACGGCGAACCCGG
TACCATGAAGATTTAAA
Found at i:391296 original size:198 final size:196
Alignment explanation
Indices: 390865--391396 Score: 538
Period size: 198 Copynumber: 2.7 Consensus size: 196
390855 CAAGGAACGT
* * * * * * *
390865 GAAGATATGAAGGGAATGGTTGAGGCCGCAACAGC--ACCCGATACCTTAGAAGATGTGATGGGG
1 GAAGATA-GAAAGGAAAGGTTGAGGCCACAACGGCGAACTCGGTACCTTAGAAGATGTGATGGGA
* ** * * *
390928 AGGATTGAGGCTGCAACGACGAATCCGGTACCATGAAATGTGATGAA--AAAGGTTGAGGCCGTA
65 AGGATTGAGGCCGCAACGGTGAATCCGGTACCATGAAATAT--TAAAGGAAAGGTTGAGGCCGCA
* * * * *
390991 ATGGCAAACCCGGTACCATAAAAATTTGAAGGGAAAGATTGAGACCGTAATGGCAAACCCGATAC
128 ACGACAAACCCGGTACCATAAAAATGTGAAGGGAAAGATTGAGACCGCAACGGCAAACCCGATAC
*
391056 CTTA
193 CATA
* ** ** * *
391060 GAAGATAAGAAAGGAAATGTTGAGGCTGCAGGGGCGAACTTGGTACCTTAGAAGATGTAATGGGA
1 GAAGAT-AGAAAGGAAAGGTTGAGGCCACAACGGCGAACTCGGTACCTTAGAAGATGTGATGGGA
* *
391125 AGGATTGAGGCCACAACGGTGAACCCGGTACCATGAAGATATTAAAGGAAAGGTTGAGGCCGCAA
65 AGGATTGAGGCCGCAACGGTGAATCCGGTACCATGAA-ATATTAAAGGAAAGGTTGAGGCCGCAA
* * * * * * **
391190 CGACGAACCCGGTACCTTACAAGATGTGATGGGAAAGGTTGAGGCCGCAACGGTGAACCC-AGTA
129 CGACAAACCCGGTACCATA-AAAATGTGAAGGGAAAGATTGAGACCGCAACGGCAAACCCGA-TA
391254 CCAT-
192 CCATA
391258 GAAGAT-GTAAAGGGAAAGGTTGAGGCCACAACGGCGAACTCGGTACCTTAGAAGATGTGATGGG
1 GAAGATAG-AAA-GGAAAGGTTGAGGCCACAACGGCGAACTCGGTACCTTAGAAGATGTGATGGG
* * * * * *
391322 AAGGATTGAGGCCGCAACAGTGAATCCGGTACCATGGATATATAAAAGGAAAGGTTAAGACCGTA
64 AAGGATTGAGGCCGCAACGGTGAATCCGGTACCAT-GAAATATTAAAGGAAAGGTTGAGGCCGCA
*
391387 ACGGCAAACC
128 ACGACAAACC
391397 TAGTACCTTA
Statistics
Matches: 275, Mismatches: 51, Indels: 19
0.80 0.15 0.06
Matches are distributed among these distances:
195 26 0.09
196 5 0.02
197 58 0.21
198 148 0.54
199 38 0.14
ACGTcount: A:0.35, C:0.17, G:0.31, T:0.17
Consensus pattern (196 bp):
GAAGATAGAAAGGAAAGGTTGAGGCCACAACGGCGAACTCGGTACCTTAGAAGATGTGATGGGAA
GGATTGAGGCCGCAACGGTGAATCCGGTACCATGAAATATTAAAGGAAAGGTTGAGGCCGCAACG
ACAAACCCGGTACCATAAAAATGTGAAGGGAAAGATTGAGACCGCAACGGCAAACCCGATACCAT
A
Found at i:391846 original size:123 final size:123
Alignment explanation
Indices: 391586--392156 Score: 713
Period size: 123 Copynumber: 4.7 Consensus size: 123
391576 AGCTTCGACA
* * * * * * * *
391586 TCAAATCCCACCTTCCTGGTGAGATACAAAGAAGTAGGTTAAACAATTAAGTGATCATCTTCCTG
1 TCAAACCCCATCTTCCTGATGAGGTACAAAGAAGTAGGTCAAACAATGAAGTGGTCATCTTCCTA
* * *
391651 GTGAGATAT--AG-AGTGTACCAAAATAATGAGGTGAAGCTCACATATGAGAGAAACT
66 GTGAGATATAGAGAAGTGTACCAAAATAATGAGGTGAAGCTCAAATGTGAGTGAAACT
* *
391706 TCAAACCCCATCTTCCTGATGAGGTACAAAGAAATAGCTCAAACAATGAAGTGGTCATCTTCCTA
1 TCAAACCCCATCTTCCTGATGAGGTACAAAGAAGTAGGTCAAACAATGAAGTGGTCATCTTCCTA
391771 GTGAGATATAGAGAAGTGTACCAAAATAATGAGGTGAAGCTCAAATGTGAGTGAAACT
66 GTGAGATATAGAGAAGTGTACCAAAATAATGAGGTGAAGCTCAAATGTGAGTGAAACT
* * * * * * *
391829 TTAGACCCCATCATCCTGGTGAGGTACAGAGAAGTCGGTCAAACAATGAAGTGGTCAACTTCCTA
1 TCAAACCCCATCTTCCTGATGAGGTACAAAGAAGTAGGTCAAACAATGAAGTGGTCATCTTCCTA
* * * *
391894 GTGAGATATAAAGAAGTGTACCAAAATAATAAGGTGAAACTCAAATGTGAGTAAAACT
66 GTGAGATATAGAGAAGTGTACCAAAATAATGAGGTGAAGCTCAAATGTGAGTGAAACT
* * * *
391952 TCAGACCCCATCTTCCT-AGTGAGGTACAGAGAACTAGGTCAAACAATGAAGTGGTCATCTTCAT
1 TCAAACCCCATCTTCCTGA-TGAGGTACAAAGAAGTAGGTCAAACAATGAAGTGGTCATCTTCCT
* *
392016 GGTGAGATACAGAGAAGTGTACCAAAATAATGAGGTGAAGCTCAAATGTGAGTGAAACT
65 AGTGAGATATAGAGAAGTGTACCAAAATAATGAGGTGAAGCTCAAATGTGAGTGAAACT
* * * * * ** **
392075 TCAAACCCCATCTT-CTTACTGAGATATAGAGAAGT-GGGCGAAACAACAAAGCAGTCATCTTCC
1 TCAAACCCCATCTTCCTGA-TGAGGTACAAAGAAGTAGGTC-AAACAATGAAGTGGTCATCTTCC
*
392138 TAGTGAGATACAGAGAAGT
64 TAGTGAGATATAGAGAAGT
392157 AGATCAAAAT
Statistics
Matches: 394, Mismatches: 51, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
120 64 0.16
122 7 0.02
123 323 0.82
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.23
Consensus pattern (123 bp):
TCAAACCCCATCTTCCTGATGAGGTACAAAGAAGTAGGTCAAACAATGAAGTGGTCATCTTCCTA
GTGAGATATAGAGAAGTGTACCAAAATAATGAGGTGAAGCTCAAATGTGAGTGAAACT
Found at i:393675 original size:17 final size:16
Alignment explanation
Indices: 393632--393701 Score: 59
Period size: 17 Copynumber: 4.2 Consensus size: 16
393622 AATTTTAGAT
* *
393632 TTTAAATTTTAATTCA
1 TTTAAATTTAAATTTA
*
393648 TTTTAATTTTAAATTTA
1 -TTTAAATTTAAATTTA
**
393665 TTGTAAATTTAAGCTTA
1 TT-TAAATTTAAATTTA
*
393682 TTTGGAATTTAAATTTA
1 TTT-AAATTTAAATTTA
393699 TTT
1 TTT
393702 TGAAATAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
16 3 0.07
17 39 0.93
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (16 bp):
TTTAAATTTAAATTTA
Found at i:395138 original size:30 final size:30
Alignment explanation
Indices: 395102--395276 Score: 208
Period size: 30 Copynumber: 5.8 Consensus size: 30
395092 CAAAAGGTCA
* *
395102 CTAAACTTTTCTAAAATCATATTTTAACCC
1 CTAAACTTTTCCAAAATCACATTTTAACCC
*
395132 CTAAACTTTTCCAAAATTACATTTTAACCC
1 CTAAACTTTTCCAAAATCACATTTTAACCC
* *
395162 CTAAACTTTTCCAAAATTACATTTTAAACC
1 CTAAACTTTTCCAAAATCACATTTTAACCC
* * *
395192 CTAAACATTTCCAAAATCATATTTTAA-CT
1 CTAAACTTTTCCAAAATCACATTTTAACCC
* * *
395221 CTCAAACTTTTCTAAAATTACATTTTGACCC
1 CT-AAACTTTTCCAAAATCACATTTTAACCC
* *
395252 CTCAAAATTTTCTAAAATCACATTT
1 CT-AAACTTTTCCAAAATCACATTT
395277 CGACCCTCGA
Statistics
Matches: 127, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
29 3 0.02
30 100 0.79
31 24 0.19
ACGTcount: A:0.38, C:0.23, G:0.01, T:0.38
Consensus pattern (30 bp):
CTAAACTTTTCCAAAATCACATTTTAACCC
Found at i:395178 original size:60 final size:59
Alignment explanation
Indices: 395102--395307 Score: 225
Period size: 60 Copynumber: 3.4 Consensus size: 59
395092 CAAAAGGTCA
* * *
395102 CTAAACTTTTCTAAAATCATATTTTAACCCCTAAACTTTTCCAAAATTACATTTTAACCC
1 CTAAACTTTTCTAAAATTACATTTTAACCCCTAAACTTTTCCAAAATCACATTTTAA-CC
* * * * *
395162 CTAAACTTTTCCAAAATTACATTTTAAACCCTAAACATTTCCAAAATCATATTTTAACT
1 CTAAACTTTTCTAAAATTACATTTTAACCCCTAAACTTTTCCAAAATCACATTTTAACC
* * * **
395221 CTCAAACTTTTCTAAAATTACATTTTGACCCCTCAAAATTTTCTAAAATCACATTTCGACC
1 CT-AAACTTTTCTAAAATTACATTTTAACCCCT-AAACTTTTCCAAAATCACATTTTAACC
* *
395282 CTCGAACTTCTT-TAAAATTTCATTTT
1 CT-AAACTT-TTCTAAAATTACATTTT
395308 CATCCCGAGT
Statistics
Matches: 123, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
59 3 0.02
60 77 0.63
61 41 0.33
62 2 0.02
ACGTcount: A:0.36, C:0.24, G:0.01, T:0.39
Consensus pattern (59 bp):
CTAAACTTTTCTAAAATTACATTTTAACCCCTAAACTTTTCCAAAATCACATTTTAACC
Found at i:395210 original size:90 final size:91
Alignment explanation
Indices: 395102--395276 Score: 255
Period size: 90 Copynumber: 1.9 Consensus size: 91
395092 CAAAAGGTCA
* *
395102 CTAAACTTTTCTAAAATCATATTTTAACCC-CTAAACTTTTCCAAAATTACATTTTAACCCCT-A
1 CTAAACATTTCCAAAATCATATTTTAACCCTC-AAACTTTTCCAAAATTACATTTTAACCCCTCA
* *
395165 AACTTTTCCAAAATTACATTTTAAACC
65 AAATTTTCCAAAATCACATTTTAAACC
* * *
395192 CTAAACATTTCCAAAATCATATTTTAACTCTCAAACTTTTCTAAAATTACATTTTGACCCCTCAA
1 CTAAACATTTCCAAAATCATATTTTAACCCTCAAACTTTTCCAAAATTACATTTTAACCCCTCAA
*
395257 AATTTTCTAAAATCACATTT
66 AATTTTCCAAAATCACATTT
395277 CGACCCTCGA
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
90 55 0.73
91 20 0.27
ACGTcount: A:0.38, C:0.23, G:0.01, T:0.38
Consensus pattern (91 bp):
CTAAACATTTCCAAAATCATATTTTAACCCTCAAACTTTTCCAAAATTACATTTTAACCCCTCAA
AATTTTCCAAAATCACATTTTAAACC
Found at i:395298 original size:30 final size:31
Alignment explanation
Indices: 395104--395299 Score: 143
Period size: 30 Copynumber: 6.5 Consensus size: 31
395094 AAAGGTCACT
* **
395104 AAACTTTTCTAAAATCATATTTTAACCCCT-
1 AAACTTTTCTAAAATCACATTTCGACCCCTC
* * **
395134 AAACTTTTCCAAAATTACATTTTAACCCCT-
1 AAACTTTTCTAAAATCACATTTCGACCCCTC
* * ** *
395164 AAACTTTTCCAAAATTACATTTTAAACCCT-
1 AAACTTTTCTAAAATCACATTTCGACCCCTC
* * * * * *
395194 AAACATTTCCAAAATCATATTT-TAACTCTC
1 AAACTTTTCTAAAATCACATTTCGACCCCTC
* *
395224 AAACTTTTCTAAAATTACATTTTGACCCCTC
1 AAACTTTTCTAAAATCACATTTCGACCCCTC
*
395255 AAAATTTTCTAAAATCACATTTCGA-CCCTC
1 AAACTTTTCTAAAATCACATTTCGACCCCTC
*
395285 GAACTTCTT-TAAAAT
1 AAACTT-TTCTAAAAT
395300 TTCATTTTCA
Statistics
Matches: 142, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
29 5 0.04
30 108 0.76
31 29 0.20
ACGTcount: A:0.37, C:0.24, G:0.02, T:0.37
Consensus pattern (31 bp):
AAACTTTTCTAAAATCACATTTCGACCCCTC
Found at i:397217 original size:20 final size:19
Alignment explanation
Indices: 397177--397227 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
397167 CTTTTTTCGA
*
397177 TTTTTCAAAATAACGAGCT
1 TTTTTCAAAATAACGACCT
397196 TTTTTCAAAA-AATTCGACC-
1 TTTTTCAAAATAA--CGACCT
*
397215 TTTTACAAAATAA
1 TTTTTCAAAATAA
397228 TTTTAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.07
19 19 0.70
20 6 0.22
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.37
Consensus pattern (19 bp):
TTTTTCAAAATAACGACCT
Found at i:397641 original size:29 final size:26
Alignment explanation
Indices: 397575--397649 Score: 105
Period size: 26 Copynumber: 2.8 Consensus size: 26
397565 AATTTATATA
* *
397575 TTTTTAAATTATCTTCAATGATTTTT
1 TTTTTAAATTATCTTTAATTATTTTT
397601 TTTTTAAATTATCTTTAATTATTTTTT
1 TTTTTAAATTATCTTTAATTA-TTTTT
397628 CTTATTTAAATTATCTTTAATT
1 -TT-TTTAAATTATCTTTAATT
397650 TGAATGGTCT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 19 0.43
27 5 0.11
28 2 0.05
29 18 0.41
ACGTcount: A:0.28, C:0.07, G:0.01, T:0.64
Consensus pattern (26 bp):
TTTTTAAATTATCTTTAATTATTTTT
Found at i:402079 original size:14 final size:14
Alignment explanation
Indices: 402060--402093 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
402050 TTATTTGACT
*
402060 GAAAATGGTTTCCG
1 GAAAATGATTTCCG
*
402074 GAAAATGATTTCTG
1 GAAAATGATTTCCG
402088 GAAAAT
1 GAAAAT
402094 AAATTACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (14 bp):
GAAAATGATTTCCG
Found at i:402438 original size:46 final size:46
Alignment explanation
Indices: 402385--402472 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 46
402375 AAGCAAATTG
* ** *
402385 ATGATAACTACAATATTTTCCAAGTGCATAACTAGTATTACACCAC
1 ATGATAACTACAACATCGTCCAAGTGCATAACTAATATTACACCAC
402431 ATGATAACTACAACATCGTCCAAGTGCATAACTAATATTACA
1 ATGATAACTACAACATCGTCCAAGTGCATAACTAATATTACA
402473 AATTAGTAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (46 bp):
ATGATAACTACAACATCGTCCAAGTGCATAACTAATATTACACCAC
Found at i:407024 original size:15 final size:15
Alignment explanation
Indices: 407004--407041 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
406994 TTAAGCTTAT
407004 TTCAAATTTTTATGC
1 TTCAAATTTTTATGC
*
407019 TTCAAATCTTTATGC
1 TTCAAATTTTTATGC
*
407034 TTTAAATT
1 TTCAAATT
407042 GAAAATGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.13, G:0.05, T:0.53
Consensus pattern (15 bp):
TTCAAATTTTTATGC
Found at i:409612 original size:16 final size:16
Alignment explanation
Indices: 409557--409617 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
409547 GACATGATCC
* *
409557 TTTTAAAATGATAAAA
1 TTTTAAATTTATAAAA
**
409573 -TTTAAATTTA-AATT
1 TTTTAAATTTATAAAA
409587 TTTTATAATTTATAAAA
1 TTTTA-AATTTATAAAA
*
409604 TTTTAAATTAATAA
1 TTTTAAATTTATAA
409618 TTGTAAAATT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
14 2 0.06
15 12 0.34
16 14 0.40
17 7 0.20
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (16 bp):
TTTTAAATTTATAAAA
Found at i:409659 original size:78 final size:79
Alignment explanation
Indices: 409564--409713 Score: 189
Period size: 77 Copynumber: 1.9 Consensus size: 79
409554 TCCTTTTAAA
* * * * *
409564 ATGATAAAATTTAAATTTAAATTTTTTATAATTTATAAA-ATTTTAAATTAAT-AATTG-TAAAA
1 ATGATAAAATTTAAATTT-AATCTTTTAAAAATTATAAAGA-TATAAATTAATAAAATGATAAAA
409626 TTATATTTTGCCTTCG
64 TTATATTTTGCCTTCG
* * *
409642 ATGATGAAATTTTAATTTAATCTTTTAAAAATTATAAAGATATAAATTATTAAAATGATAAAATT
1 ATGATAAAATTTAAATTTAATCTTTTAAAAATTATAAAGATATAAATTAATAAAATGATAAAATT
409707 ATATTTT
66 ATATTTT
409714 ATTATCATAA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
77 26 0.43
78 21 0.34
79 14 0.23
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (79 bp):
ATGATAAAATTTAAATTTAATCTTTTAAAAATTATAAAGATATAAATTAATAAAATGATAAAATT
ATATTTTGCCTTCG
Found at i:411477 original size:10 final size:9
Alignment explanation
Indices: 411458--411482 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
411448 CCAACTGTGC
411458 TTTTTATTT
1 TTTTTATTT
411467 TTTTTATTT
1 TTTTTATTT
411476 TTTTTAT
1 TTTTTAT
411483 AAAAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTATTT
Found at i:411849 original size:32 final size:32
Alignment explanation
Indices: 411813--411878 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
411803 CAAGAGTTAG
411813 ATTGTATCAATCATTCCACGTTAGAACAAAGA
1 ATTGTATCAATCATTCCACGTTAGAACAAAGA
*
411845 ATTGTATTAATCATTCCACGTTAGAACAAAGA
1 ATTGTATCAATCATTCCACGTTAGAACAAAGA
411877 AT
1 AT
411879 GAATTGATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (32 bp):
ATTGTATCAATCATTCCACGTTAGAACAAAGA
Found at i:417064 original size:3 final size:3
Alignment explanation
Indices: 417056--417085 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
417046 GCTACATGAC
417056 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
417086 AATAATGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:418588 original size:33 final size:31
Alignment explanation
Indices: 418551--418616 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
418541 ATTTTTTTTT
*
418551 TTTTTAAATATTATAATTTAGAGTTTTTATATA
1 TTTTTAAATATT-T-ATTTAGAATTTTTATATA
* * *
418584 TTTTTTAATATTTTTTTTGAATTTTTATATA
1 TTTTTAAATATTTATTTAGAATTTTTATATA
418615 TT
1 TT
418617 CATAAAATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 17 0.59
32 1 0.03
33 11 0.38
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (31 bp):
TTTTTAAATATTTATTTAGAATTTTTATATA
Found at i:420681 original size:6 final size:6
Alignment explanation
Indices: 420672--420712 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
420662 AATCATGGTG
* *
420672 TTTTTG TTTTTG TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
420713 TGAAAAAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.10, C:0.00, G:0.05, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:422754 original size:80 final size:80
Alignment explanation
Indices: 422621--422777 Score: 260
Period size: 80 Copynumber: 2.0 Consensus size: 80
422611 GGGCGCAAAC
* * * * *
422621 CGTTGGTTAATCCAACTAGAGTTGGGCTCATTTATCGCGGTTTATCCGCTAGGCACTGGGTGCTA
1 CGTTGGTTAATCCAACTAAAGCTGGGCTCACTTATCGCGGTTTATCCGCTAGGCACCGGGTGCCA
422686 TGAATTGACGGAATT
66 TGAATTGACGGAATT
*
422701 CGTTGGTTAATCCAACTAAAGCTGGGCTCACTTATTGCGGTTTATCCGCTAGGCACCGGGTGCCA
1 CGTTGGTTAATCCAACTAAAGCTGGGCTCACTTATCGCGGTTTATCCGCTAGGCACCGGGTGCCA
422766 TGAATTGACGGA
66 TGAATTGACGGA
422778 TTTGGTTGAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (80 bp):
CGTTGGTTAATCCAACTAAAGCTGGGCTCACTTATCGCGGTTTATCCGCTAGGCACCGGGTGCCA
TGAATTGACGGAATT
Found at i:423663 original size:22 final size:26
Alignment explanation
Indices: 423624--423670 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 26
423614 GTGTTTCATT
423624 ATTATTTTTTTCATAAATTT-AAAAC
1 ATTATTTTTTTCATAAATTTCAAAAC
423649 ATTA-TTTTTT-A-AAATTTCAAAA
1 ATTATTTTTTTCATAAATTTCAAAA
423671 TCCATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 6 0.29
23 5 0.24
24 6 0.29
25 4 0.19
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (26 bp):
ATTATTTTTTTCATAAATTTCAAAAC
Found at i:424278 original size:105 final size:105
Alignment explanation
Indices: 424198--424431 Score: 405
Period size: 105 Copynumber: 2.2 Consensus size: 105
424188 ATATATATTG
*
424198 AATATTTAGATTTTTTTTATTTTTAATTCTTAATTTTAAAAATATTTTTACATAATTGTTAATAA
1 AATATTAAGATTTTTTTTATTTTTAATTCTTAATTTTAAAAATATTTTTACATAATTGTTAATAA
*
424263 TTGATATTTATTTTTAAGATTTTTTAAAAAAATTAGAATT
66 TTGACATTTATTTTTAAGATTTTTTAAAAAAATTAGAATT
* *
424303 ATTGTTAAGATTTTTTTTATTTTTAATTCTTAATTTTAAAAATATTTTTACATAATTGTTAATAA
1 AATATTAAGATTTTTTTTATTTTTAATTCTTAATTTTAAAAATATTTTTACATAATTGTTAATAA
424368 TTGACATTTATTTTTAAGATTTTTTAAAAAAATTAGAATT
66 TTGACATTTATTTTTAAGATTTTTTAAAAAAATTAGAATT
* * *
424408 ATTGTTAAGATTTTTTTTTTTTTT
1 AATATTAAGATTTTTTTTATTTTT
424432 TTTAAAGTAA
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
105 124 1.00
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (105 bp):
AATATTAAGATTTTTTTTATTTTTAATTCTTAATTTTAAAAATATTTTTACATAATTGTTAATAA
TTGACATTTATTTTTAAGATTTTTTAAAAAAATTAGAATT
Found at i:424308 original size:51 final size:51
Alignment explanation
Indices: 424252--424415 Score: 179
Period size: 51 Copynumber: 3.2 Consensus size: 51
424242 TTTTTACATA
424252 ATTGTTAATAATTGATATTTATTTTTAAGATTTTTTAAAAAAATTAGAATT
1 ATTGTTAATAATTGATATTTATTTTTAAGATTTTTTAAAAAAATTAGAATT
* * * ** * ** *
424303 ATTGTTAA-GATT-TTTTTTATTTTTAATTCTTAATTTTAAAAATATTTTTACATA
1 ATTGTTAATAATTGATATTTATTTTTAA-GATT--TTTTAAAAA-AATTAGA-ATT
*
424357 ATTGTTAATAATTGACATTTATTTTTAAGATTTTTTAAAAAAATTAGAATT
1 ATTGTTAATAATTGATATTTATTTTTAAGATTTTTTAAAAAAATTAGAATT
424408 ATTGTTAA
1 ATTGTTAA
424416 GATTTTTTTT
Statistics
Matches: 87, Mismatches: 19, Indels: 14
0.73 0.16 0.12
Matches are distributed among these distances:
49 12 0.14
50 5 0.06
51 18 0.21
52 13 0.15
53 13 0.15
54 10 0.11
55 5 0.06
56 11 0.13
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.53
Consensus pattern (51 bp):
ATTGTTAATAATTGATATTTATTTTTAAGATTTTTTAAAAAAATTAGAATT
Found at i:430642 original size:28 final size:29
Alignment explanation
Indices: 430589--430647 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
430579 TAAATTTGAA
*
430589 TATTTGATAACTTATAAAAATAT-AAATT
1 TATTTGATAAATTATAAAAATATAAAATT
* * *
430617 TATTTGATAAATTATAAGATTTTAAAATT
1 TATTTGATAAATTATAAAAATATAAAATT
430646 TA
1 TA
430648 AATCTAAACA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 19 0.73
29 7 0.27
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (29 bp):
TATTTGATAAATTATAAAAATATAAAATT
Found at i:437458 original size:19 final size:19
Alignment explanation
Indices: 437434--437471 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
437424 AAAGAAAATC
437434 TATAATTTCT-GAAAAATGA
1 TATAATTT-TAGAAAAATGA
437453 TATAATTTTAGAAAAATGA
1 TATAATTTTAGAAAAATGA
437472 GGGCTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.06
19 17 0.94
ACGTcount: A:0.50, C:0.03, G:0.11, T:0.37
Consensus pattern (19 bp):
TATAATTTTAGAAAAATGA
Found at i:437609 original size:15 final size:15
Alignment explanation
Indices: 437578--437622 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
437568 AATTTATGTC
437578 TTATTATTATTAT-TT
1 TTATTATTATT-TGTT
437593 TTATTATTATTTGTT
1 TTATTATTATTTGTT
*
437608 TTA-TAATATTTGTT
1 TTATTATTATTTGTT
437622 T
1 T
437623 CGCTTTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (15 bp):
TTATTATTATTTGTT
Found at i:438470 original size:14 final size:14
Alignment explanation
Indices: 438441--438480 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
438431 AATGAGTTAT
438441 TTTTATAATTAATTAA
1 TTTTATAA--AATTAA
*
438457 TTTTTTAAAATTAA
1 TTTTATAAAATTAA
438471 TTTTATAAAA
1 TTTTATAAAA
438481 AAACCTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 15 0.68
16 7 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTTATAAAATTAA
Found at i:440831 original size:2 final size:2
Alignment explanation
Indices: 440826--440855 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
440816 CCAACGTTAA
440826 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
440856 TATTTTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:441765 original size:1 final size:1
Alignment explanation
Indices: 441761--441790 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
441751 NNNNNNNNNN
*
441761 TTTTTTTTTTTTTTTTTTTTTTTTTATTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
441791 AAATACGCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.03, C:0.00, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:442436 original size:20 final size:21
Alignment explanation
Indices: 442413--442454 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
442403 GCTTATGAGT
442413 TTTTTATTTCTT-ATATTTTA
1 TTTTTATTTCTTAATATTTTA
*
442433 TTTTTATTTTTTAATATTTTA
1 TTTTTATTTCTTAATATTTTA
442454 T
1 T
442455 AATTTTTAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTTATTTCTTAATATTTTA
Found at i:452123 original size:20 final size:20
Alignment explanation
Indices: 452100--452145 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
452090 TTTTTAATTT
452100 TTTTTTATA-AATATTTTGAA
1 TTTTTTA-AGAATATTTTGAA
* *
452120 TTTTTGAAGATTATTTTGAA
1 TTTTTTAAGAATATTTTGAA
452140 TTTTTT
1 TTTTTT
452146 TTTTTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (20 bp):
TTTTTTAAGAATATTTTGAA
Found at i:459314 original size:120 final size:120
Alignment explanation
Indices: 459101--459346 Score: 467
Period size: 120 Copynumber: 2.1 Consensus size: 120
459091 AAACGTTTCC
*
459101 ACACAAGGCACCATTTTAATTACAAATTCCAAAAACAATGGATTCAAAAGAAATAAGCCATTCAG
1 ACACAAGGCACCATTTTAATTACAAATTCCAAAAACAACGGATTCAAAAGAAATAAGCCATTCAG
*
459166 TTTTTTCTCTGTACATATAGAGAATTAAATTCAAGTTTCTCATCTAGAGATGTCA
66 TTTTTTCTCTGTACATATAGAGAATTAAATTCAAGTTTCTAATCTAGAGATGTCA
459221 ACACAAGGCACCATTTTAATTACAAATTCCAAAAACAACGGATTCAAAAGAAATAAGCCATTCAG
1 ACACAAGGCACCATTTTAATTACAAATTCCAAAAACAACGGATTCAAAAGAAATAAGCCATTCAG
459286 TTTTTTCTCTGTACATATAGAGAATTAAATTCAAGTTTCTAATCTAGAGATGTCA
66 TTTTTTCTCTGTACATATAGAGAATTAAATTCAAGTTTCTAATCTAGAGATGTCA
459341 AC-CAAG
1 ACACAAG
459347 AATTCATATT
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
119 4 0.03
120 120 0.97
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.30
Consensus pattern (120 bp):
ACACAAGGCACCATTTTAATTACAAATTCCAAAAACAACGGATTCAAAAGAAATAAGCCATTCAG
TTTTTTCTCTGTACATATAGAGAATTAAATTCAAGTTTCTAATCTAGAGATGTCA
Found at i:466809 original size:91 final size:90
Alignment explanation
Indices: 466709--466882 Score: 219
Period size: 91 Copynumber: 1.9 Consensus size: 90
466699 ACTAGGTACT
*
466709 AAATTAGGAAAAAGAGTCAAGTTCAT-G-TACCAAATTGGACTC-CAAAAAGTTTAAGTACCAAC
1 AAATTAGGAAAAAGAGTCAAGTT--TGGATACCAAATTGGAC-CAAAAAAAGTTTAAGTACCAA-
*
466771 TTTAAAAAAAAGTATCAAGTTTATGTATC
62 ATTAAAAAAAAGTATCAAGTTTATGTATC
* * *
466800 AAATTAGGAAAAAGTGTCAAGTTTGGATACCAAATTGGACCAAAAAAAAGTTTAGGTATCAAATT
1 AAATTAGGAAAAAGAGTCAAGTTTGGATACCAAATTGGACC-AAAAAAAGTTTAAGTACCAAATT
* *
466865 AAGAAAAAGTGTCAAGTT
65 AAAAAAAAGTATCAAGTT
466883 CAGGTGGCAA
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
89 1 0.01
90 2 0.03
91 53 0.74
92 16 0.22
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (90 bp):
AAATTAGGAAAAAGAGTCAAGTTTGGATACCAAATTGGACCAAAAAAAGTTTAAGTACCAAATTA
AAAAAAAGTATCAAGTTTATGTATC
Found at i:466820 original size:31 final size:31
Alignment explanation
Indices: 466777--466887 Score: 97
Period size: 31 Copynumber: 3.6 Consensus size: 31
466767 CAACTTTAAA
* *
466777 AAAAAGTATCAAGTTTATGTATCAAATTAGG
1 AAAAAGTGTCAAGTTTAGGTATCAAATTAGG
*
466808 AAAAAGTGTCAAGTTT-GGATACCAAATT-GG
1 AAAAAGTGTCAAGTTTAGG-TATCAAATTAGG
** *
466838 ACCAAAA---AAAAGTTTAGGTATCAAATTAAG
1 A--AAAAGTGTCAAGTTTAGGTATCAAATTAGG
*
466868 AAAAAGTGTCAAGTTCAGGT
1 AAAAAGTGTCAAGTTTAGGT
466888 GGCAAATGTT
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
28 4 0.06
29 14 0.23
30 8 0.13
31 32 0.52
32 4 0.06
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.27
Consensus pattern (31 bp):
AAAAAGTGTCAAGTTTAGGTATCAAATTAGG
Found at i:469716 original size:21 final size:21
Alignment explanation
Indices: 469670--469741 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
469660 ATAGTGCAGA
* * *
469670 CTTCTACCAATACAAGTAACA
1 CTTCTACCGATACAAGTGACT
* *
469691 GTTCTACCGATACAAGTGATT
1 CTTCTACCGATACAAGTGACT
*
469712 CTTCTATCGATACAAGTGACT
1 CTTCTACCGATACAAGTGACT
469733 CTTCTACCG
1 CTTCTACCG
469742 CTACTAAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (21 bp):
CTTCTACCGATACAAGTGACT
Found at i:469815 original size:21 final size:21
Alignment explanation
Indices: 469791--469830 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
469781 ACTTCTACTA
469791 ATACAAGTATGCAAACTACCT
1 ATACAAGTATGCAAACTACCT
469812 ATACAAGTATGCAAACTAC
1 ATACAAGTATGCAAACTAC
469831 TGATACTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.23, G:0.10, T:0.23
Consensus pattern (21 bp):
ATACAAGTATGCAAACTACCT
Found at i:469836 original size:21 final size:20
Alignment explanation
Indices: 469785--469836 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
469775 CTTGCTACTT
469785 CTACTAATACAAGTATGCAAA
1 CTACT-ATACAAGTATGCAAA
469806 CTACCTATACAAGTATGCAAA
1 CTA-CTATACAAGTATGCAAA
469827 CTACTGATAC
1 CTACT-ATAC
469837 TTCTAAACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 2 0.07
21 25 0.86
22 2 0.07
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.25
Consensus pattern (20 bp):
CTACTATACAAGTATGCAAA
Found at i:477574 original size:18 final size:18
Alignment explanation
Indices: 477551--477586 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
477541 ATTATATAAT
477551 ATTTAAATATATAATTTA
1 ATTTAAATATATAATTTA
*
477569 ATTTAAATATATATTTTA
1 ATTTAAATATATAATTTA
477587 TTTTTGATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTAAATATATAATTTA
Done.