Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01015194.1 Kokia drynarioides strain JFW-HI SEQ_130238, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 139465
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Warning! 33 characters in sequence are not A, C, G, or T
Found at i:186 original size:23 final size:21
Alignment explanation
Indices: 153--201 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 21
143 TAAATTATGA
** *
153 TTAAATTATTTATTATTATTT
1 TTAAATTATTTAAGAATATTT
174 TTAAATTACATTTAAGAATATTT
1 TTAAATT--ATTTAAGAATATTT
197 TTAAA
1 TTAAA
202 AAAATTTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 7 0.30
23 16 0.70
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
TTAAATTATTTAAGAATATTT
Found at i:1693 original size:41 final size:41
Alignment explanation
Indices: 1646--1723 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
1636 ATGGGAGGGG
* *
1646 AATGGAAAATGGTTGTTTAGTTAAGTCTGTAACGGAACTGT
1 AATGGAAAATGGTAGCTTAGTTAAGTCTGTAACGGAACTGT
* *
1687 AATGGAAAATGGTAGCTTCGTTACGTCTGTAACGGAA
1 AATGGAAAATGGTAGCTTAGTTAAGTCTGTAACGGAA
1724 AATGGTTAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.32, C:0.10, G:0.27, T:0.31
Consensus pattern (41 bp):
AATGGAAAATGGTAGCTTAGTTAAGTCTGTAACGGAACTGT
Found at i:4384 original size:19 final size:18
Alignment explanation
Indices: 4362--4431 Score: 52
Period size: 21 Copynumber: 3.7 Consensus size: 18
4352 AAAATATAAC
4362 AAAAACTAAAAAATAATT
1 AAAAACTAAAAAATAATT
* *
4380 GAAAA-TAAAAAAAAATCT
1 AAAAACTAAAAAATAAT-T
* * *
4398 TAAAACTCAGAAAACTATTT
1 AAAAACT-A-AAAAATAATT
4418 AAAAAACTAAAAAA
1 -AAAAACTAAAAAA
4432 AAATCATAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
17 10 0.26
18 9 0.23
19 5 0.13
20 3 0.08
21 12 0.31
ACGTcount: A:0.69, C:0.09, G:0.03, T:0.20
Consensus pattern (18 bp):
AAAAACTAAAAAATAATT
Found at i:4599 original size:16 final size:17
Alignment explanation
Indices: 4580--4612 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4570 TTTTTGGTAA
*
4580 TTTTAAA-TTTTTTTAT
1 TTTTAAAGTATTTTTAT
4596 TTTTAAAGTATTTTTAT
1 TTTTAAAGTATTTTTAT
4613 AGTTGTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTTAAAGTATTTTTAT
Found at i:17201 original size:124 final size:124
Alignment explanation
Indices: 16981--17230 Score: 482
Period size: 124 Copynumber: 2.0 Consensus size: 124
16971 CCTTCCAATG
16981 TTATCTAAAGGGATATTAGATAGTGCTAAATAATATATATATTAGTAATACCTTTCTGCTTGGCG
1 TTATCTAAAGGGATATTAGATAGTGCTAAATAATATATATATTAGTAATACCTTTCTGCTTGGCG
17046 CAAGTTTTGGAGGATCAAGAATAACTATATCCCATGATTCATTTCTAGAAAGAGCACCC
66 CAAGTTTTGGAGGATCAAGAATAACTATATCCCATGATTCATTTCTAGAAAGAGCACCC
* *
17105 TTATCTAAAGGGATATTAGATAGTTCTAAATAATATATATATTAGTAATACCTTTCTGCTTGGTG
1 TTATCTAAAGGGATATTAGATAGTGCTAAATAATATATATATTAGTAATACCTTTCTGCTTGGCG
17170 CAAGTTTTGGAGGATCAAGAATAACTATATCCCATGATTCATTTCTAGAAAGAGCACCC
66 CAAGTTTTGGAGGATCAAGAATAACTATATCCCATGATTCATTTCTAGAAAGAGCACCC
17229 TT
1 TT
17231 CATAAATACA
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 124 1.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (124 bp):
TTATCTAAAGGGATATTAGATAGTGCTAAATAATATATATATTAGTAATACCTTTCTGCTTGGCG
CAAGTTTTGGAGGATCAAGAATAACTATATCCCATGATTCATTTCTAGAAAGAGCACCC
Found at i:22981 original size:2 final size:2
Alignment explanation
Indices: 22974--23009 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
22964 TCACTCAAAA
22974 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
23010 TGTGTACTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:28088 original size:2 final size:2
Alignment explanation
Indices: 28081--28112 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
28071 TCACTCAAAA
28081 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
28113 TGTGTTCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:28659 original size:32 final size:29
Alignment explanation
Indices: 28622--28686 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 29
28612 TAATAACTAA
28622 AATATTACAACATGATAAAATGATTAAAAAAT
1 AATATTACAA-AT-AT-AAATGATTAAAAAAT
* * *
28654 AATATTTCAAATATAAATTATTAAAATAT
1 AATATTACAAATATAAATGATTAAAAAAT
28683 AATA
1 AATA
28687 AAAAAATAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 17 0.57
30 2 0.07
31 2 0.07
32 9 0.30
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (29 bp):
AATATTACAAATATAAATGATTAAAAAAT
Found at i:31672 original size:26 final size:26
Alignment explanation
Indices: 31628--31677 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
31618 AGTGTACTGG
* *
31628 TTTAAGTTTTAATATTTTCCAGTTAT
1 TTTAAATTTTAATATTTTCAAGTTAT
31654 TTTAAATTTGTAATA-TTTCAAGTT
1 TTTAAATTT-TAATATTTTCAAGTT
31678 TAGATTATGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.30, C:0.06, G:0.08, T:0.56
Consensus pattern (26 bp):
TTTAAATTTTAATATTTTCAAGTTAT
Found at i:35949 original size:151 final size:150
Alignment explanation
Indices: 35636--37677 Score: 2602
Period size: 151 Copynumber: 13.5 Consensus size: 150
35626 CACATTTTGT
* ** *
35636 AATCATAAATTCCTAAAATTTTGAAATTCATGCATTTCT-ATACATTTCAAATACATAATCAAAG
1 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTAATACATTTCAAATACATAATCAAAG
* *
35700 TTCAACCTTAACTAATTTGTCTTTTCATAGCTCATAGAA--AATATAACAAATAAAAAATCCAAA
66 TTCAACCTTAACTAATTTGGCTTTTCATAGCTCA-A-AATCAATATAACAAATGAAAAATCCAAA
35763 TTCAGCTTTTCATAGCTTATAA
129 TTCAGCTTTTCATAGCTTATAA
* * * *
35785 AATCATAACTTCTTAAGATTTTGAAATTAATGTTTCTTTTAATACATTTCAAATACATAATAAAA
1 AATCATAAATTCCTAAGATTTTGAAATTCATGTTT-TTTTAATACATTTCAAATACATAATCAAA
* * * * *
35850 GTTCAACCTTAACTAATTTGTCTTTTCATAGCTCATAGTAAATATAACAAATAAAAAATCCAAAT
65 GTTCAACCTTAACTAATTTGGCTTTTCATAGCTCAAAATCAATATAACAAATGAAAAATCCAAAT
35915 TCAGCTTTTCATAGCTTATAA
130 TCAGCTTTTCATAGCTTATAA
** * *
35936 AATCATTCATTCTTAAGATTTTGAAATTAATGTTTCTTTTAATACATTTCAAATACATAATCAAA
1 AATCATAAATTCCTAAGATTTTGAAATTCATGTTT-TTTTAATACATTTCAAATACATAATCAAA
* *
36001 GTTCAACCTTAACTAATTTGGTCTTTTCATAGCTC-AAATTAATAAAACAAATGAAAAATCCAAA
65 GTTCAACCTTAACTAATTTGG-CTTTTCATAGCTCAAAATCAATATAACAAATGAAAAATCCAAA
36065 TTCAGCTTTTCATAGCTTAT-A
129 TTCAGCTTTTCATAGCTTATAA
* *
36086 AATCATAAATTCCTAAGATTTTGAAATTCTTGTTTTCTTATATACATTTCAAATACATAATCAAA
1 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTA-ATACATTTCAAATACATAATCAAA
* * *
36151 GTTCAACCTTAACTAATTTGGCCTTTTCATAGATC-AAATTAATAAAACAAATGAAAAATCCAAA
65 GTTCAACCTTAACTAATTTGG-CTTTTCATAGCTCAAAATCAATATAACAAATGAAAAATCCAAA
36215 TTCAGCTTTTCATAGCTTATAA
129 TTCAGCTTTTCATAGCTTATAA
*
36237 AATCATAAATTCCTAAGATTTTGAAA-T--T-TTTTCTTATATACATTTCAAATACATAATCAAA
1 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTA-ATACATTTCAAATACATAATCAAA
* * *
36298 GTTAAACCTTAACGAATTTGGCTTTTTCA-AGCTCAAAATCAATATAACAAATGAAAATTCCAAA
65 GTTCAACCTTAACTAATTTGGC-TTTTCATAGCTCAAAATCAATATAACAAATGAAAAATCCAAA
* * *
36362 TTTAGCTTCTCATACCTTATAA
129 TTCAGCTTTTCATAGCTTATAA
36384 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTCTAATATGTTTTTTTAATACATTTCAAA
1 AATCATAAATTCCTAAGATTTTG-AA---A-----TTC----ATGTTTTTTTAATACATTTCAAA
* * *
36449 TACATAGTCAGAGTTCAACCTTAACTAATTTGGCTTTTCATAACTCAAAATCAAT-TCAACAAAT
53 TACATAATCAAAGTTCAACCTTAACTAATTTGGCTTTTCATAGCTCAAAATCAATAT-AACAAAT
*
36513 GAAAAATCCAAATTCATCTTTTTCATAGCTTATAA
117 GAAAAATCCAAATTCAGC-TTTTCATAGCTTATAA
* *
36548 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTCTT-CTACATTTCAAATACATAATCAAAG
1 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTAATACATTTCAAATACATAATCAAAG
*
36612 TTCAACCTTAACTAATTTGGCTTTTTCA-AGCTCAAAATCAATATAACAAATGAAATATCCAAAT
66 TTCAACCTTAACTAATTTGGC-TTTTCATAGCTCAAAATCAATATAACAAATGAAAAATCCAAAT
* * *
36676 TTAGCTTCTCATACCTTATAA
130 TCAGCTTTTCATAGCTTATAA
*
36697 AATAATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTAAATACATTTCAAATACATAATCAAA
1 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTTT-AATACATTTCAAATACATAATCAAA
* * **
36762 GTTCAATCTTAACTAATTTAGCTTTTCATAGCTCAAAATCAATATAACAAATGAAAAAAACAAAT
65 GTTCAACCTTAACTAATTTGGCTTTTCATAGCTCAAAATCAATATAACAAATGAAAAATCCAAAT
*
36827 TCAG-TTTCTCATACCTTATAA
130 TCAGCTTT-TCATAGCTTATAA
** * *
36848 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTGTTATATTTCAAATACATAATGAAAG
1 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTAATACATTTCAAATACATAATCAAAG
* * * *
36913 TTCGACCTTAACTAATTTGGCTTTTCATAACTCAAAATCAATACAACAAATGAAAAATCCAAACT
66 TTCAACCTTAACTAATTTGGCTTTTCATAGCTCAAAATCAATATAACAAATGAAAAATCCAAATT
36978 CAGCTTTTCATAGCTTATAA
131 CAGCTTTTCATAGCTTATAA
*
36998 AATCATAAATTCCTAAGATTTTGAAATTCA--TTTTTCTAATACATTTCAAATACATAATCAAAG
1 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTAATACATTTCAAATACATAATCAAAG
* *
37061 TTCAACCTTAACTAATTTGGCATTTCATAGCTCAAAATCAATATAACAAATGAAAATTTCCAAAT
66 TTCAACCTTAACTAATTTGGCTTTTCATAGCTCAAAATCAATATAACAAATGAAAA-ATCCAAAT
* * * *
37126 TTAACTTCTCATACCTTATAA
130 TCAGCTTTTCATAGCTTATAA
* * * ** * *
37147 AACCATAAAATCCTAAGATTTCGAAATTTGTGTTTTCTTAATACATTTCAAATACATGATCAAAG
1 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTAATACATTTCAAATACATAATCAAAG
* * * * * * * *
37212 TTCAACCTTAGCTAACTTGGCCTTTCATATCTCAAAATTAATATGACAAATGAAAATTCCAAAGT
66 TTCAACCTTAACTAATTTGGCTTTTCATAGCTCAAAATCAATATAACAAATGAAAAATCCAAATT
37277 CAGCTTTTCATAGCTTATAA
131 CAGCTTTTCATAGCTTATAA
* ** * * *
37297 AAT-ACTAAAATCGACCTAAGATTTTGACGTTCATGCTTTCTT-ATACATTTCAAATACAGAATC
1 AATCA-T-AAAT--TCCTAAGATTTTGAAATTCATGTTTTTTTAATACATTTCAAATACATAATC
* * *
37360 AAAGTTAAACCTTAACAAATTTGGCTTTTTCATAGCTCAAAATCAATATAACAAATGAAATATCC
62 AAAGTTCAACCTTAACTAATTTGGC-TTTTCATAGCTCAAAATCAATATAACAAATGAAAAATCC
* *
37425 AAATTCAGCTTCTCATACCTTATAA
126 AAATTCAGCTTTTCATAGCTTATAA
* * ** * *
37450 AATCATAAATTCCTAAGCTTTCGAAATTTGTGTTCTCTT-ATACATTTCAAAATACATAATCAAA
1 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTAATACATTTC-AAATACATAATCAAA
* *
37514 GTTCAACCTTAACAAATTT-GCTTTTCATAGCTCAAAATTAATATAACAAATGAAAAATCCAAA-
65 GTTCAACCTTAACTAATTTGGCTTTTCATAGCTCAAAATCAATATAACAAATGAAAAATCCAAAT
* **
37577 TCTAGCTTCTCATTCCTTATAA
130 TC-AGCTTTTCATAGCTTATAA
* * * ** * *
37599 AATCATAAATTCCTAAGCTTTCGAAATTTAT-TGATTTT-ATACTTTTTCAAATGCATAATCAAA
1 AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTAATAC-ATTTCAAATACATAATCAAA
* *
37662 ATTCAAACTTAACTAA
65 GTTCAACCTTAACTAA
37678 ATTAAACTTT
Statistics
Matches: 1682, Mismatches: 163, Indels: 97
0.87 0.08 0.05
Matches are distributed among these distances:
146 5 0.00
147 126 0.07
148 120 0.07
149 226 0.13
150 409 0.24
151 521 0.31
152 57 0.03
153 81 0.05
154 1 0.00
155 3 0.00
157 1 0.00
160 1 0.00
162 7 0.00
163 80 0.05
164 44 0.03
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.37
Consensus pattern (150 bp):
AATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTAATACATTTCAAATACATAATCAAAG
TTCAACCTTAACTAATTTGGCTTTTCATAGCTCAAAATCAATATAACAAATGAAAAATCCAAATT
CAGCTTTTCATAGCTTATAA
Found at i:37203 original size:761 final size:755
Alignment explanation
Indices: 35667--37677 Score: 2725
Period size: 761 Copynumber: 2.7 Consensus size: 755
35657 TGAAATTCAT
* * *
35667 GCATTTC-TATACATTTCAAATACATAATCAAAGTTCAACCTTAACTAATTTGTCTTTTCATAGC
1 GCATTTCAAATACATTTCAAATACAT-ATC-AAGTTCAACCTTAACTAATTTGGCTTTTCATAAC
* *
35731 TCATAGAA-AATATAACAAATAAAAAATCCAAATTCAGCTTTTCATAGCTTATAAAATCATAACT
64 TCA-A-AATAATATAACAAATGAAAAATCCAAATTCAGCTTTTCATAGCTTATAAAATCATAAAT
* * * *
35795 TCTTAAGATTTTGAAATTAATGTTTCTTTTAATACATTTCAAATACATAATAAAAGTTCAACCTT
127 TCCTAAGATTTTGAAATTCATGTTT-TCTT-ATACATTTCAAATACATAATCAAAGTTCAACCTT
* * * * * * *
35860 AACTAATTTGTC-TTTTCATAGCTCATAGTAAATATAACAAATAAAAAATCCAAATTCAGCTTTT
190 AACTAATTTGGCTTTTTCATAGCTCAAAATCAATATAACAAATGAAATATCCAAATTCAGCTTCT
* ** *
35924 CATAGCTTATAAAATCATTCATTCTTAAGATTTTGAAATTAATGTTTCTTTTAATACATTTCAAA
255 CATACCTTATAAAATCATAAATTCCTAAGATTTTGAAATTAATGTTT-TTTTAATACATTTCAAA
*
35989 TACATAATCAAAGTTCAACCTTAACTAATTTGGTCTTTTCATAGCTC-AAATTAATAAAACAAAT
319 TACATAATCAAAGTTCAACCTTAACTAATTT-G-CTTTTCATAGCTCAAAATTAATATAACAAAT
* *
36053 GAAAAATCCAAATTCAGCTTT-TCATAGCTTAT-AAATCATAAATTCCTAAGATTTTGAAATTCT
382 GAAAAATCCAAATTCAG-TTTCTCATACCTTATAAAATCATAAATTCCTAAGATTTTGAAATTCA
36116 TGTTTTCTTATATACATTTCAAATACATAATCAAAGTTCAACCTTAACTAATTTGGCCTTTTCAT
446 TGTTTTCTTATATACATTTCAAATACATAATCAAAGTTCAACCTTAACTAATTTGGCCTTTTCAT
* *
36181 AGATCAAATTAATAAAACAAATGAAAAATCCAAATTCAGCTTTTCATAGCTTATAAAATCATAAA
511 AGATCAAATCAATAAAACAAATGAAAAATCCAAACTCAGCTTTTCATAGCTTATAAAATCATAAA
36246 TTCCTAAGATTTTGAAATTTTTTCTTATATACATTTCAAATACATAATCAAAGTTAAACCTTAAC
576 TTCCTAAGATTTTGAAATTTTTTCTTATATACATTTCAAATACATAATCAAAGTTAAACCTTAAC
* *
36311 GAATTTGGCTTTTTCAAGCTCAAAATCAATATAACAAATGAAAATTCCAAATTTAGCTTCTCATA
641 GAATTTGGCTATTTCAAGCTCAAAATCAATATAACAAATGAAAATTCCAAATTTAACTTCTCATA
* * *
36376 CCTTATAAAATCATAAATTCCTAAGATTTTGAAATTCATGTTTTTCTAATA
706 CCTTATAAAACCATAAAATCCTAAGATTTCGAAATT-ATGTTTTTCTAATA
** **
36427 TGTTTTTTTAATACATTTCAAATACATAGTCAGAGTTCAACCTTAACTAATTTGGCTTTTCATAA
1 -GCATTTCAAATACATTTCAAATACATA-TCA-AGTTCAACCTTAACTAATTTGGCTTTTCATAA
*
36492 CTCAAAATCAAT-TCAACAAATGAAAAATCCAAATTCATCTTTTTCATAGCTTATAAAATCATAA
63 CTCAAAAT-AATAT-AACAAATGAAAAATCCAAATTCAGC-TTTTCATAGCTTATAAAATCATAA
*
36556 ATTCCTAAGATTTTGAAATTCATGTTTTCTTCTACATTTCAAATACATAATCAAAGTTCAACCTT
125 ATTCCTAAGATTTTGAAATTCATGTTTTCTTATACATTTCAAATACATAATCAAAGTTCAACCTT
*
36621 AACTAATTTGGCTTTTTCA-AGCTCAAAATCAATATAACAAATGAAATATCCAAATTTAGCTTCT
190 AACTAATTTGGCTTTTTCATAGCTCAAAATCAATATAACAAATGAAATATCCAAATTCAGCTTCT
* *
36685 CATACCTTATAAAATAATAAATTCCTAAGATTTTGAAATTCATGTTTTTTTAAATACATTTCAAA
255 CATACCTTATAAAATCATAAATTCCTAAGATTTTGAAATTAATGTTTTTTT-AATACATTTCAAA
* *
36750 TACATAATCAAAGTTCAATCTTAACTAATTTAGCTTTTCATAGCTCAAAATCAATATAACAAATG
319 TACATAATCAAAGTTCAACCTTAACTAATTT-GCTTTTCATAGCTCAAAATTAATATAACAAATG
**
36815 AAAAAAACAAATTCAGTTTCTCATACCTTATAAAATCATAAATTCCTAAGATTTTGAAATTCATG
383 AAAAATCCAAATTCAGTTTCTCATACCTTATAAAATCATAAATTCCTAAGATTTTGAAATTCATG
* * * * *
36880 TTTTTTTGT-TATATTTCAAATACATAATGAAAGTTCGACCTTAACTAATTTGG-CTTTTCATA-
448 TTTTCTTATATACATTTCAAATACATAATCAAAGTTCAACCTTAACTAATTTGGCCTTTTCATAG
*
36942 ACTCAAAATCAATACAACAAATGAAAAATCCAAACTCAGCTTTTCATAGCTTATAAAATCATAAA
513 A-TC-AAATCAATAAAACAAATGAAAAATCCAAACTCAGCTTTTCATAGCTTATAAAATCATAAA
*
37007 TTCCTAAGATTTTGAAATTCATTTT-TCTA-ATACATTTCAAATACATAATCAAAGTTCAACCTT
576 TTCCTAAGATTTTGAAATT--TTTTCT-TATATACATTTCAAATACATAATCAAAGTTAAACCTT
*
37070 AACTAATTTGGC-ATTTCATAGCTCAAAATCAATATAACAAATGAAAATTTCCAAATTTAACTTC
638 AACGAATTTGGCTATTTCA-AGCTCAAAATCAATATAACAAATGAAAA-TTCCAAATTTAACTTC
*
37134 TCATACCTTATAAAACCATAAAATCCTAAGATTTCGAAATT-TG-TGTT-T--T-
701 TCATACCTTATAAAACCATAAAATCCTAAGATTTCGAAATTATGTTTTTCTAATA
* * * *
37183 -C--TT--AATACATTTCAAATACATGATCAAAGTTCAACCTTAGCTAACTTGGCCTTTCATATC
1 GCATTTCAAATACATTTCAAATACAT-ATC-AAGTTCAACCTTAACTAATTTGGCTTTTCATAAC
* * *
37243 TCAAAATTAATATGACAAATGAAAATTCCAAAGTCAGCTTTTCATAGCTTATAAAAT-ACTAAAA
64 TCAAAA-TAATATAACAAATGAAAAATCCAAATTCAGCTTTTCATAGCTTATAAAATCA-T-AAA
* ** * * *
37307 TCGACCTAAGATTTTGACGTTCATGCTTTCTTATACATTTCAAATACAGAATCAAAGTTAAACCT
126 T--TCCTAAGATTTTGAAATTCATGTTTTCTTATACATTTCAAATACATAATCAAAGTTCAACCT
*
37372 TAACAAATTTGGCTTTTTCATAGCTCAAAATCAATATAACAAATGAAATATCCAAATTCAGCTTC
189 TAACTAATTTGGCTTTTTCATAGCTCAAAATCAATATAACAAATGAAATATCCAAATTCAGCTTC
* * ** * *
37437 TCATACCTTATAAAATCATAAATTCCTAAGCTTTCGAAATTTGTGTTCTCTT-ATACATTTCAAA
254 TCATACCTTATAAAATCATAAATTCCTAAGATTTTGAAATTAATGTTTTTTTAATACATTTC-AA
*
37501 ATACATAATCAAAGTTCAACCTTAACAAATTTGCTTTTCATAGCTCAAAATTAATATAACAAATG
318 ATACATAATCAAAGTTCAACCTTAACTAATTTGCTTTTCATAGCTCAAAATTAATATAACAAATG
* * * * *
37566 AAAAATCCAAA-TCTAGCTTCTCATTCCTTATAAAATCATAAATTCCTAAGCTTTCGAAATTTAT
383 AAAAATCCAAATTC-AGTTTCTCATACCTTATAAAATCATAAATTCCTAAGATTTTGAAATTCAT
** * * * *
37630 -TGAT-TT-TATACTTTTTCAAATGCATAATCAAAATTCAAACTTAACTAA
447 GTTTTCTTATATAC-ATTTCAAATACATAATCAAAGTTCAACCTTAACTAA
37678 ATTAAACTTT
Statistics
Matches: 1122, Mismatches: 96, Indels: 75
0.87 0.07 0.06
Matches are distributed among these distances:
748 2 0.00
749 24 0.02
750 117 0.10
751 99 0.09
752 108 0.10
753 88 0.08
757 1 0.00
759 2 0.00
760 36 0.03
761 338 0.30
762 200 0.18
763 107 0.10
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.37
Consensus pattern (755 bp):
GCATTTCAAATACATTTCAAATACATATCAAGTTCAACCTTAACTAATTTGGCTTTTCATAACTC
AAAATAATATAACAAATGAAAAATCCAAATTCAGCTTTTCATAGCTTATAAAATCATAAATTCCT
AAGATTTTGAAATTCATGTTTTCTTATACATTTCAAATACATAATCAAAGTTCAACCTTAACTAA
TTTGGCTTTTTCATAGCTCAAAATCAATATAACAAATGAAATATCCAAATTCAGCTTCTCATACC
TTATAAAATCATAAATTCCTAAGATTTTGAAATTAATGTTTTTTTAATACATTTCAAATACATAA
TCAAAGTTCAACCTTAACTAATTTGCTTTTCATAGCTCAAAATTAATATAACAAATGAAAAATCC
AAATTCAGTTTCTCATACCTTATAAAATCATAAATTCCTAAGATTTTGAAATTCATGTTTTCTTA
TATACATTTCAAATACATAATCAAAGTTCAACCTTAACTAATTTGGCCTTTTCATAGATCAAATC
AATAAAACAAATGAAAAATCCAAACTCAGCTTTTCATAGCTTATAAAATCATAAATTCCTAAGAT
TTTGAAATTTTTTCTTATATACATTTCAAATACATAATCAAAGTTAAACCTTAACGAATTTGGCT
ATTTCAAGCTCAAAATCAATATAACAAATGAAAATTCCAAATTTAACTTCTCATACCTTATAAAA
CCATAAAATCCTAAGATTTCGAAATTATGTTTTTCTAATA
Found at i:54102 original size:20 final size:20
Alignment explanation
Indices: 54064--54102 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
54054 TTTTGACACG
* * *
54064 TATTTTTTTTATTTTTTTAT
1 TATTATTTTTATATATTTAT
54084 TATTATTTTTATATATTTA
1 TATTATTTTTATATATTTA
54103 AAAATAAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (20 bp):
TATTATTTTTATATATTTAT
Found at i:54245 original size:27 final size:27
Alignment explanation
Indices: 54209--54263 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
54199 TACCTGACAC
54209 CCAATGGAGGAACA-CGAAGTGGCGGCA
1 CCAATGGAGGAACATC-AAGTGGCGGCA
*
54236 CCAATGGAGGAATATCAAGTGGCGGCA
1 CCAATGGAGGAACATCAAGTGGCGGCA
54263 C
1 C
54264 TAAGGGGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.33, C:0.22, G:0.35, T:0.11
Consensus pattern (27 bp):
CCAATGGAGGAACATCAAGTGGCGGCA
Found at i:54443 original size:4 final size:4
Alignment explanation
Indices: 54434--54499 Score: 62
Period size: 4 Copynumber: 16.2 Consensus size: 4
54424 AAATAAACGG
* * *
54434 GAAA GAAA GAAA GGAAA GAAA GAAA GAAA GGAA GAAG GAGAG GAAA GAAA
1 GAAA GAAA GAAA -GAAA GAAA GAAA GAAA GAAA GAAA GA-AA GAAA GAAA
* *
54484 G-AA TAAT GAAA GAAA G
1 GAAA GAAA GAAA GAAA G
54500 GTAATGTGTT
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
3 2 0.04
4 41 0.80
5 8 0.16
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (4 bp):
GAAA
Found at i:54456 original size:17 final size:17
Alignment explanation
Indices: 54434--54466 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
54424 AAATAAACGG
54434 GAAAGAAAGAAAGGAAA
1 GAAAGAAAGAAAGGAAA
54451 GAAAGAAAGAAAGGAA
1 GAAAGAAAGAAAGGAA
54467 GAAGGAGAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (17 bp):
GAAAGAAAGAAAGGAAA
Found at i:54500 original size:29 final size:30
Alignment explanation
Indices: 54434--54500 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
54424 AAATAAACGG
54434 GAAAGAAA-GAAAGGAAAGAAAGAAAGAAA
1 GAAAGAAAGGAAAGGAAAGAAAGAAAGAAA
* * * *
54463 GGAAG-AAGGAGAGGAAAGAAAG-AATAAT
1 GAAAGAAAGGAAAGGAAAGAAAGAAAGAAA
54491 GAAAGAAAGG
1 GAAAGAAAGG
54501 TAATGTGTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.64, C:0.00, G:0.33, T:0.03
Consensus pattern (30 bp):
GAAAGAAAGGAAAGGAAAGAAAGAAAGAAA
Found at i:55997 original size:45 final size:43
Alignment explanation
Indices: 55907--55988 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
55897 CACCCACGTG
55907 CATGCCACATTAAGAAAGTTAAAAAAAAGTTAATTTTTTCATC
1 CATGCCACATTAAGAAAGTTAAAAAAAAGTTAATTTTTTCATC
*
55950 CATGCCACATT-AGAAAAGTTAAAAAAACGTTAATTTTTT
1 CATGCCACATTAAG-AAAGTTAAAAAAAAGTTAATTTTTT
55989 TTTATCCATT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
42 2 0.05
43 35 0.95
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (43 bp):
CATGCCACATTAAGAAAGTTAAAAAAAAGTTAATTTTTTCATC
Found at i:57274 original size:28 final size:29
Alignment explanation
Indices: 57216--57282 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
57206 ACAAATGCCC
* *
57216 TTTTCTATAATTAATTTATTCTTCACCTTA
1 TTTT-TATAATTAATTTATTCTTAACATTA
* *
57246 TTTTTATAATTAA-TTATTTTTAATATTA
1 TTTTTATAATTAATTTATTCTTAACATTA
57274 TTTTTATAA
1 TTTTTATAA
57283 AAAGAATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 20 0.61
29 9 0.27
30 4 0.12
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.61
Consensus pattern (29 bp):
TTTTTATAATTAATTTATTCTTAACATTA
Found at i:64888 original size:13 final size:13
Alignment explanation
Indices: 64870--64895 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64860 GTTGTTCTGA
64870 AGTTCCAAATGAT
1 AGTTCCAAATGAT
64883 AGTTCCAAATGAT
1 AGTTCCAAATGAT
64896 GGTTTAGTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
AGTTCCAAATGAT
Found at i:68570 original size:16 final size:16
Alignment explanation
Indices: 68539--68576 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
68529 GGTATATGAT
68539 ATTTTTCTTTTATTAC
1 ATTTTTCTTTTATTAC
*
68555 -TTTTTCTTTTCTTTAC
1 ATTTTTCTTTT-ATTAC
68571 ATTTTT
1 ATTTTT
68577 TCCGTTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 10 0.53
16 4 0.21
17 5 0.26
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (16 bp):
ATTTTTCTTTTATTAC
Found at i:68964 original size:65 final size:64
Alignment explanation
Indices: 68868--68999 Score: 255
Period size: 65 Copynumber: 2.0 Consensus size: 64
68858 CTAACAACAA
68868 TTTTTTATATCAACTAACTAAAATTTAGTCAACCCTATTTTTAAAGATTTAAATACTCAATTTT
1 TTTTTTATATCAACTAACTAAAATTTAGTCAACCCTATTTTTAAAGATTTAAATACTCAATTTT
68932 TTTTTATATATCAACTAACTAAAATTTAGTCAACCCTATTTTTAAAGATTTAAATACTCAATTTT
1 TTTTT-TATATCAACTAACTAAAATTTAGTCAACCCTATTTTTAAAGATTTAAATACTCAATTTT
68997 TTT
1 TTT
69000 AATTTGATTT
Statistics
Matches: 67, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
64 5 0.07
65 62 0.93
ACGTcount: A:0.37, C:0.14, G:0.03, T:0.46
Consensus pattern (64 bp):
TTTTTTATATCAACTAACTAAAATTTAGTCAACCCTATTTTTAAAGATTTAAATACTCAATTTT
Found at i:77704 original size:2 final size:2
Alignment explanation
Indices: 77699--77723 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
77689 CTTTTGTTGT
77699 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
77724 TAAAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:83596 original size:19 final size:19
Alignment explanation
Indices: 83533--83596 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 19
83523 TCAATAGATA
83533 CCTTTTGAAGAGTCACAA-
1 CCTTTTGAAGAGTCACAAC
* * * *
83551 CCTTTTCAA-ATTGGATGAAC
1 CCTTTTGAAGAGT-CA-CAAC
83571 ACCTTTTGAAGAGTCACAAC
1 -CCTTTTGAAGAGTCACAAC
83591 CCTTTT
1 CCTTTT
83597 CATATTGGAC
Statistics
Matches: 33, Mismatches: 8, Indels: 9
0.66 0.16 0.18
Matches are distributed among these distances:
17 2 0.06
18 9 0.27
19 8 0.24
20 3 0.09
21 9 0.27
22 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (19 bp):
CCTTTTGAAGAGTCACAAC
Found at i:83621 original size:39 final size:38
Alignment explanation
Indices: 83530--83622 Score: 116
Period size: 39 Copynumber: 2.4 Consensus size: 38
83520 CACTCAATAG
83530 ATACCTTTTGAAGAGTCACAACCTTTTCAAATTGGATGA
1 ATACCTTTTGAAGAGTCACAACCTTTTCAAATTGGA-GA
* * *
83569 ACACCTTTTGAAGAGTCACAACCCTTTTCATATTGGA-C
1 ATACCTTTTGAAGAGTCACAA-CCTTTTCAAATTGGAGA
*
83607 ATACCTCTTGGAAGAG
1 ATACCT-TTTGAAGAG
83623 ACTTGTCCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 5 0.11
39 28 0.60
40 14 0.30
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (38 bp):
ATACCTTTTGAAGAGTCACAACCTTTTCAAATTGGAGA
Found at i:84629 original size:26 final size:26
Alignment explanation
Indices: 84593--84643 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
84583 TCGAACTATC
84593 TCAATTGCTGTATTTATGAATTGCAA
1 TCAATTGCTGTATTTATGAATTGCAA
84619 TCAATTGCTGTATTTATGAATTGCA
1 TCAATTGCTGTATTTATGAATTGCA
84644 TTGTATAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (26 bp):
TCAATTGCTGTATTTATGAATTGCAA
Found at i:92725 original size:119 final size:116
Alignment explanation
Indices: 92581--92801 Score: 363
Period size: 119 Copynumber: 1.9 Consensus size: 116
92571 AATAGTTAAA
*
92581 AAAAATCAAAACTTTGTTTAAAAATTTAAATTTTT-TTTAAAAAATAACTAAAAAACAAATTTTT
1 AAAAATCAAAACTTTATTTAAAAATTTAAATTTTTCTTT-AAAAATAACTAAAAAACAAATTTTT
92645 ATTTTTTAAAATATAAACTTTTTTTTCTTTTTTAATGAAAATCAGTACTTTACTT
65 A-TTTTTAAAA-AT-AACTTTTTTTTCTTTTTTAATGAAAATCAGTACTTTACTT
* *
92700 AAAAATCAAAACTTTATTTAAAAATTTTAATTTTTCTTTAAAAATAACTAAAAAACATATTTTTA
1 AAAAATCAAAACTTTATTTAAAAATTTAAATTTTTCTTTAAAAATAACTAAAAAACAAATTTTTA
*
92765 TTTTTAAAAATAATTTTTTTTTCTTTTTTAATGAAAA
66 TTTTTAAAAATAACTTTTTTTTCTTTTTTAATGAAAA
92802 CTTTACTTAA
Statistics
Matches: 97, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
116 25 0.26
117 2 0.02
118 9 0.09
119 58 0.60
120 3 0.03
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (116 bp):
AAAAATCAAAACTTTATTTAAAAATTTAAATTTTTCTTTAAAAATAACTAAAAAACAAATTTTTA
TTTTTAAAAATAACTTTTTTTTCTTTTTTAATGAAAATCAGTACTTTACTT
Found at i:92936 original size:143 final size:144
Alignment explanation
Indices: 92700--93020 Score: 382
Period size: 143 Copynumber: 2.2 Consensus size: 144
92690 TACTTTACTT
* * *
92700 AAAAATCAAAACTTTATTTAAAAATTTTAA-TTTTTCTTTAAAAATAACTAAAAAACATATTTTT
1 AAAAATCAAAACTTTATTTAAAAATTTAAACTTTTTCTTTAAAAAAAACTAAAAAACAGATTTTT
** * * *
92764 ATTTTTAAAAATAATTTTTTTTTCTTTTTTAATG-AAA-ACT-TTACTTAAAAACCCAAACTTTT
66 ATTTTTAAAAATAATACTTTCTCCCTTTTTAATGAAAACACTATTACTTAAAAACCCAAA-TTTT
92826 ATTTCGAAATAGTTAA
130 -TTTCGAAATAGTTAA
* * **
92842 TAAAATCAAAACTTTTTTTAAAAATTTAAACTTTTTCTTTAAAAAAAACTAAAAAGTAGATTTTT
1 AAAAATCAAAACTTTATTTAAAAATTTAAACTTTTTCTTTAAAAAAAACTAAAAAACAGATTTTT
** ****
92907 ATTTTTAAAATATAA-ACTTTCTCCCTTTTTAATGAAAATCACTACTTTTTTAAAAATTTTAATT
66 ATTTTTAAAA-ATAATACTTTCTCCCTTTTTAATGAAAA-CACTA-TTACTTAAAAACCCAAATT
*
92971 TTTTTTGAAATAGTTAA
128 TTTTTCGAAATAGTTAA
*
92988 AAAAAGCAAAACTTTATTTAAAAATTTAAACTT
1 AAAAATCAAAACTTTATTTAAAAATTTAAACTT
93021 CTCTAAAAAA
Statistics
Matches: 150, Mismatches: 22, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
142 27 0.18
143 54 0.36
144 7 0.05
146 47 0.31
147 4 0.03
148 11 0.07
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (144 bp):
AAAAATCAAAACTTTATTTAAAAATTTAAACTTTTTCTTTAAAAAAAACTAAAAAACAGATTTTT
ATTTTTAAAAATAATACTTTCTCCCTTTTTAATGAAAACACTATTACTTAAAAACCCAAATTTTT
TTCGAAATAGTTAA
Found at i:93390 original size:42 final size:42
Alignment explanation
Indices: 93329--93537 Score: 244
Period size: 42 Copynumber: 5.0 Consensus size: 42
93319 AGAGAAGAAG
* * *
93329 AAAGTAAATAGGCCCCCACACTTGGGCCTCTGAATGCGATGA
1 AAAGTAAATAGACCTCCACACTTGGGCCTCTAAATGCGATGA
* *
93371 AAAGTAAATAGACCTCCACACTTGGGCTTTTAAATGCGATGA
1 AAAGTAAATAGACCTCCACACTTGGGCCTCTAAATGCGATGA
** * *
93413 AAAGTAAAGGGACCTCCACAATTGGGCCTCTAAATGCAAT-A
1 AAAGTAAATAGACCTCCACACTTGGGCCTCTAAATGCGATGA
* * * *
93454 AAAATAAAT-GAGCCTCCACACCTAGGCCTCTGAATGCGATG-
1 AAAGTAAATAGA-CCTCCACACTTGGGCCTCTAAATGCGATGA
* * *
93495 AAAGTAAATGGACCTCCATACTTGGGCCTCTAAATGCAATGA
1 AAAGTAAATAGACCTCCACACTTGGGCCTCTAAATGCGATGA
93537 A
1 A
93538 TGCTTTCCTT
Statistics
Matches: 139, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
40 2 0.01
41 63 0.45
42 74 0.53
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (42 bp):
AAAGTAAATAGACCTCCACACTTGGGCCTCTAAATGCGATGA
Found at i:93524 original size:82 final size:83
Alignment explanation
Indices: 93328--93537 Score: 264
Period size: 82 Copynumber: 2.5 Consensus size: 83
93318 AAGAGAAGAA
* * * *
93328 GAAAGTAAATAGG-CCCCCACACTTGGGCCTCTGAATGCGATGAAAAGTAAATAGACCTCCACAC
1 GAAAGTAAAT-GGACCTCCACACTTGGGCCTCTAAATGCAATGAAAAATAAATAGACCTCCACAC
* * * *
93392 TTGGGCTTTTAAATGCGAT
65 CTAGGCCTCTAAATGCGAT
* *
93411 GAAAAGTAAAGGGACCTCCACAATTGGGCCTCTAAATGCAAT-AAAAATAAAT-GAGCCTCCACA
1 G-AAAGTAAATGGACCTCCACACTTGGGCCTCTAAATGCAATGAAAAATAAATAGA-CCTCCACA
*
93474 CCTAGGCCTCTGAATGCGAT
64 CCTAGGCCTCTAAATGCGAT
*
93494 GAAAGTAAATGGACCTCCATACTTGGGCCTCTAAATGCAATGAA
1 GAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATGCAATGAA
93538 TGCTTTCCTT
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
82 39 0.36
83 38 0.35
84 32 0.29
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.21
Consensus pattern (83 bp):
GAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATGCAATGAAAAATAAATAGACCTCCACACC
TAGGCCTCTAAATGCGAT
Found at i:93994 original size:12 final size:12
Alignment explanation
Indices: 93957--93994 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 12
93947 TTTTTTTTTC
93957 TTTTTTCTT-AT
1 TTTTTTCTTGAT
*
93968 TTTTTTTTTGTAT
1 TTTTTTCTTG-AT
93981 TTTTTTCTTGAT
1 TTTTTTCTTGAT
93993 TT
1 TT
93995 AAACAAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 8 0.35
12 4 0.17
13 11 0.48
ACGTcount: A:0.08, C:0.05, G:0.05, T:0.82
Consensus pattern (12 bp):
TTTTTTCTTGAT
Found at i:94242 original size:15 final size:15
Alignment explanation
Indices: 94214--94249 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
94204 CTCCAAGGCA
*
94214 TCTTGTACCTTTTTTT
1 TCTT-TACCCTTTTTT
94230 TCTTTACCCTTTTTT
1 TCTTTACCCTTTTTT
94245 TCTTT
1 TCTTT
94250 CTTTTTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.06, C:0.22, G:0.03, T:0.69
Consensus pattern (15 bp):
TCTTTACCCTTTTTT
Found at i:96001 original size:19 final size:18
Alignment explanation
Indices: 95979--96022 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
95969 TAAGTAACAT
*
95979 TAATAGTAATATTAATTAA
1 TAATAATAATATT-ATTAA
*
95998 TAATAATAATATTTTTAA
1 TAATAATAATATTATTAA
96016 TAATAAT
1 TAATAAT
96023 TAAAAAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
TAATAATAATATTATTAA
Found at i:97045 original size:29 final size:30
Alignment explanation
Indices: 97013--97469 Score: 188
Period size: 29 Copynumber: 15.6 Consensus size: 30
97003 CGAATTTCCT
97013 AAAAATTACATTTTT-CCCTCGAACTTTTC
1 AAAAATTACATTTTTACCCTCGAACTTTTC
* *
97042 -AAAATTTCATTTTTGACCC-C-AAATTTTCC
1 AAAAATTACATTTTT-ACCCTCGAACTTTT-C
97071 AAAAATTACATTTTTACTCC-CGAACTTTT-
1 AAAAATTACATTTTTAC-CCTCGAACTTTTC
* * * * *
97100 TAAAATTCCAATTTGACCCT--AA-ATTTC
1 AAAAATTACATTTTTACCCTCGAACTTTTC
* *
97127 AAAAAAATACATTTTTACCCTCAAAC-TTTC
1 -AAAAATTACATTTTTACCCTCGAACTTTTC
* * *
97157 CAAAATT-CTATTTTTAACCTCG-AGTTTTCC
1 AAAAATTAC-ATTTTTACCCTCGAACTTTT-C
* *
97187 AAAAATTACATTTTTACCCTCAAACTTTGC
1 AAAAATTACATTTTTACCCTCGAACTTTTC
* *
97217 -TAAATTTCATTTTTGA-CCTCGAA-TTTTCC
1 AAAAATTACATTTTT-ACCCTCGAACTTTT-C
* ** *
97246 AAAAATTACATATTTA-CCTTTAA-TCTTC
1 AAAAATTACATTTTTACCCTCGAACTTTTC
*
97274 -AAAATTAC-TATTTTACCCTCGAA--TATC
1 AAAAATTACAT-TTTTACCCTCGAACTTTTC
* * *
97301 TAAAAA-TACCATTTTTTTATCC-CGAACCTTCC
1 -AAAAATTA-CA--TTTTTACCCTCGAACTTTTC
* * *
97333 AAAAATTACCA-TTTTACCC-CGGA-TGTCC
1 AAAAATTA-CATTTTTACCCTCGAACTTTTC
*
97361 AAAAATTACATTTTTTACCC-C-AAATTTTCC
1 AAAAATTACA-TTTTTACCCTCGAACTTTT-C
* * *
97391 AAAAAAATTACCA-TTTTACCCTCAAACATCT-
1 --AAAAATTA-CATTTTTACCCTCGAACTTTTC
* * *
97422 AAAAATTACCA-TTATACCCCCGAAC-ATTC
1 AAAAATTA-CATTTTTACCCTCGAACTTTTC
97451 AAAAATTACCA-TTTTACCC
1 AAAAATTA-CATTTTTACCC
97470 CCGAGTATCC
Statistics
Matches: 329, Mismatches: 58, Indels: 82
0.70 0.12 0.17
Matches are distributed among these distances:
26 4 0.01
27 18 0.05
28 62 0.19
29 130 0.40
30 61 0.19
31 31 0.09
32 17 0.05
33 6 0.02
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.37
Consensus pattern (30 bp):
AAAAATTACATTTTTACCCTCGAACTTTTC
Found at i:97099 original size:59 final size:59
Alignment explanation
Indices: 97007--97263 Score: 290
Period size: 59 Copynumber: 4.4 Consensus size: 59
96997 TGAACACGAA
*
97007 TTTCCTAAAAATTACATTTTT-CCCTCGAACTTTTCAAAATTTCATTTTTGACCCCAAAT
1 TTTCC-AAAAATTACATTTTTACCCTCAAACTTTTCAAAATTTCATTTTTGACCCCAAAT
* * * * *
97066 TTTCCAAAAATTACATTTTTACTCC-CGAACTTTTTAAAATTCCA-ATTTGACCCTAAA-
1 TTTCCAAAAATTACATTTTTAC-CCTCAAACTTTTCAAAATTTCATTTTTGACCCCAAAT
* * * * * * *
97123 TTTCAAAAAAATACATTTTTACCCTCAAACTTTCCAAAA-TTCTATTTTTAACCTCGAGT
1 TTTCCAAAAATTACATTTTTACCCTCAAACTTTTCAAAATTTC-ATTTTTGACCCCAAAT
* * * *
97182 TTTCCAAAAATTACATTTTTACCCTCAAACTTTGCTAAATTTCATTTTTGACCTCGAAT
1 TTTCCAAAAATTACATTTTTACCCTCAAACTTTTCAAAATTTCATTTTTGACCCCAAAT
*
97241 TTTCCAAAAATTACATATTTACC
1 TTTCCAAAAATTACATTTTTACC
97264 TTTAATCTTC
Statistics
Matches: 168, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
56 4 0.02
57 32 0.19
58 33 0.20
59 94 0.56
60 5 0.03
ACGTcount: A:0.33, C:0.23, G:0.04, T:0.40
Consensus pattern (59 bp):
TTTCCAAAAATTACATTTTTACCCTCAAACTTTTCAAAATTTCATTTTTGACCCCAAAT
Found at i:97222 original size:116 final size:118
Alignment explanation
Indices: 97013--97263 Score: 298
Period size: 116 Copynumber: 2.2 Consensus size: 118
97003 CGAATTTCCT
* * *
97013 AAAAATTACATTTTT-CCCTCGAACTTTTCAAAATTTCATTTTTGACCCCAAATTTTCCAAAAAT
1 AAAAATTACATTTTTACCCTCAAACTTTCCAAAATTTCATTTTTAACCCCAAATTTTCCAAAAAT
* * *
97077 TACATTTTTACTCCCGAACTTTTTAAAATTCCA-ATTTGACC-CTAAATTTCA
66 TACATTTTTACTCCCAAACTTTCTAAAATTCCATATTTGACCTCGAAATTTCA
* * * *
97128 AAAAAATACATTTTTACCCTCAAACTTTCCAAAA-TTCTATTTTTAACCTCGAGTTTTCCAAAAA
1 AAAAATTACATTTTTACCCTCAAACTTTCCAAAATTTC-ATTTTTAACCCCAAATTTTCCAAAAA
* * * *
97192 TTACATTTTTAC-CCTCAAACTTTGCT-AAATTTCATTTTTGACCTCGAATTTTCC
65 TTACATTTTTACTCC-CAAACTTT-CTAAAATTCCATATTTGACCTCGAAATTTCA
*
97246 AAAAATTACATATTTACC
1 AAAAATTACATTTTTACC
97264 TTTAATCTTC
Statistics
Matches: 114, Mismatches: 16, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
115 19 0.17
116 64 0.56
117 8 0.07
118 23 0.20
ACGTcount: A:0.34, C:0.22, G:0.04, T:0.40
Consensus pattern (118 bp):
AAAAATTACATTTTTACCCTCAAACTTTCCAAAATTTCATTTTTAACCCCAAATTTTCCAAAAAT
TACATTTTTACTCCCAAACTTTCTAAAATTCCATATTTGACCTCGAAATTTCA
Found at i:97277 original size:116 final size:113
Alignment explanation
Indices: 96973--97297 Score: 291
Period size: 116 Copynumber: 2.8 Consensus size: 113
96963 CCAAAAAGTC
* ** * *
96973 CCCAAACTTTCCAAATTTTTTTTTTGAACACGAATTTCCTAAAAATTACATTTTT-CCCTCGAAC
1 CCCAAACTTTCTAAATTTCATTTTTG-ACCCGAATTTCC-AAAAATTACATTTTTACCTTC-AA-
* * * *
97037 TTTTCAAAATT-TCATTTTTGACCCCAAATTTTCCAAAAATTACATTTTTACT
62 TCTTCAAAATTCT-ATTTTTAACCTCGAATTTTCCAAAAATTACATTTTTACT
* * * * * * * * *
97089 CCCGAACTTTTTAAAATTCCA-ATTTGACCCTAAATTTCAAAAAAATACATTTTTACCCTCAAAC
1 CCCAAACTTTCT-AAATTTCATTTTTGACCC-GAATTTCCAAAAATTACATTTTTACCTTCAATC
*
97153 TTTCCAAAATTCTATTTTTAACCTCGAGTTTTCCAAAAATTACATTTTTAC-
64 -TT-CAAAATTCTATTTTTAACCTCGAATTTTCCAAAAATTACATTTTTACT
* *
97204 CCTCAAACTTTGCTAAATTTCATTTTTGACCTCGAATTTTCCAAAAATTACATATTTACCTTTAA
1 CC-CAAACTTT-CTAAATTTCATTTTTGACC-CGAA-TTTCCAAAAATTACATTTTTACCTTCAA
*
97269 TCTTCAAAATTACTA-TTTTACCCTCGAAT
62 TCTTCAAAATT-CTATTTTTAACCTCGAAT
97298 ATCTAAAAAT
Statistics
Matches: 167, Mismatches: 30, Indels: 24
0.76 0.14 0.11
Matches are distributed among these distances:
115 23 0.14
116 98 0.59
117 21 0.13
118 25 0.15
ACGTcount: A:0.33, C:0.22, G:0.04, T:0.41
Consensus pattern (113 bp):
CCCAAACTTTCTAAATTTCATTTTTGACCCGAATTTCCAAAAATTACATTTTTACCTTCAATCTT
CAAAATTCTATTTTTAACCTCGAATTTTCCAAAAATTACATTTTTACT
Found at i:97341 original size:60 final size:62
Alignment explanation
Indices: 97274--97494 Score: 192
Period size: 58 Copynumber: 3.7 Consensus size: 62
97264 TTTAATCTTC
* * *
97274 AAAATTACTATTTTACCCTCGAATATCTAAAAA-TACCATTTTTTTATCCCGAACCTTCC-A
1 AAAATTACCATTTTACCCTCGAATATCTAAAAATTACCATTTTTTTACCCCAAACCTTCCAA
* * * **
97334 AAAATTACCATTTTACCC-CGGATGTCCAAAAATTA-CA-TTTTTTACCCCAAATTTTCCAAA
1 AAAATTACCATTTTACCCTCGAATATCTAAAAATTACCATTTTTTTACCCCAAACCTTCC-AA
* * * * *
97394 AAAATTACCATTTTACCCTCAAACATCTAAAAATTACCA---TTATACCCCCGAACATT-C-A
1 AAAATTACCATTTTACCCTCGAATATCTAAAAATTACCATTTTTTTA-CCCCAAACCTTCCAA
* * * * *
97452 AAAATTACCATTTTACCCCCGAGTATCCAAAATTTATCATTTT
1 AAAATTACCATTTTACCCTCGAATATCTAAAAATTACCATTTT
97495 GCCTCGAGTG
Statistics
Matches: 128, Mismatches: 24, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
58 49 0.38
59 13 0.10
60 43 0.34
61 21 0.16
62 2 0.02
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (62 bp):
AAAATTACCATTTTACCCTCGAATATCTAAAAATTACCATTTTTTTACCCCAAACCTTCCAA
Found at i:97482 original size:29 final size:29
Alignment explanation
Indices: 97330--97556 Score: 147
Period size: 29 Copynumber: 7.8 Consensus size: 29
97320 TCCCGAACCT
* *
97330 TCCAAAAATTACCATTTTACCCCGGA-TG
1 TCCAAAAATTACCATTTTACCCCCGAGTA
** * *
97358 TCCAAAAATTA-CATTTTTTACCCCAAATTT
1 TCCAAAAATTACCA--TTTTACCCCCGAGTA
* * **
97388 TCCAAAAAAATTACCATTTTACCCTCAAACA
1 TCC--AAAAATTACCATTTTACCCCCGAGTA
* * **
97419 TCTAAAAATTACCATTATACCCCCGAACA
1 TCCAAAAATTACCATTTTACCCCCGAGTA
*
97448 TTCAAAAATTACCATTTTACCCCCGAGTA
1 TCCAAAAATTACCATTTTACCCCCGAGTA
* * * * *
97477 TCCAAAATTTATCATTTT-GCCTCGAGTG
1 TCCAAAAATTACCATTTTACCCCCGAGTA
* ** *
97505 TCCAAAAATTACCACTTTACCATCGAAGTG
1 TCCAAAAATTACCATTTTACCCCCG-AGTA
* *
97535 TCC-AAAATTACCGTATTACCCC
1 TCCAAAAATTACCATTTTACCCC
97557 TGAACATCAA
Statistics
Matches: 158, Mismatches: 33, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
27 2 0.01
28 33 0.21
29 90 0.57
30 11 0.07
31 12 0.08
32 8 0.05
33 2 0.01
ACGTcount: A:0.36, C:0.28, G:0.06, T:0.30
Consensus pattern (29 bp):
TCCAAAAATTACCATTTTACCCCCGAGTA
Found at i:108275 original size:78 final size:78
Alignment explanation
Indices: 108143--108298 Score: 258
Period size: 78 Copynumber: 2.0 Consensus size: 78
108133 TGTATAGGTT
*
108143 ACACTTCTATTTCGGATCCTACTTTGAACATGGCAGCGAGAGTAGCTAAAGCATCTGCTAATTGG
1 ACACTTCTATTTCGGATCCTACTTTGAACATGGCAGCGAGAGTAGCTAAAGCATCTGCTAACTGG
108208 TTTTCTTCTCTTG
66 TTTTCTTCTCTTG
* ** *
108221 ACACTTCTATTTCGGATCCTACTTTGAACATGGTAGTTAGAGTAGCTAATGCATCTGCTAACTGG
1 ACACTTCTATTTCGGATCCTACTTTGAACATGGCAGCGAGAGTAGCTAAAGCATCTGCTAACTGG
*
108286 TTTTTTTCTCTTG
66 TTTTCTTCTCTTG
108299 GAAAATGACA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (78 bp):
ACACTTCTATTTCGGATCCTACTTTGAACATGGCAGCGAGAGTAGCTAAAGCATCTGCTAACTGG
TTTTCTTCTCTTG
Found at i:115440 original size:27 final size:27
Alignment explanation
Indices: 115402--115456 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
115392 TTCAATCTGA
115402 AACAGAAAATCAGCTAGCTCCACACTT
1 AACAGAAAATCAGCTAGCTCCACACTT
115429 AACAGAAAATCAGCTAGCTCCACACTT
1 AACAGAAAATCAGCTAGCTCCACACTT
115456 A
1 A
115457 CATATCTCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.29, G:0.11, T:0.18
Consensus pattern (27 bp):
AACAGAAAATCAGCTAGCTCCACACTT
Found at i:117663 original size:239 final size:236
Alignment explanation
Indices: 117242--117700 Score: 665
Period size: 238 Copynumber: 1.9 Consensus size: 236
117232 AATTTTCTTG
* * * *
117242 TAACTTGATTAAGACGTGTTCCTCAAACTTATTTAATTTAAAACTTAAATTAGATATTTTTACTC
1 TAACTTGACTAAGACATGTTCCTCAAACTTATCTAATTTAAAACTTAAATTAGAAATTTTTACTC
*
117307 CTAATAAGAACCCTAAAGAATACCTAATAATTCTAGTAAAATACTTTCAATTCTTAAAATTAATT
66 CTAACAAGAACCCTAAAGAATACCTAATAATTCTAGTAAAATACTTTCAATTCTTAAAATTAATT
* * *
117372 TTATTTTAGAATCCTAAAAAATCCTAAAAAAATTACTAATGAATTCAGAGAAATATTAAAATTCA
131 CTATTTTAGAATCCTAAAAAACCCT-AAAAAATTACTAATGAATTAAGAGAAATATTAAAATTCA
117437 CCTACAACTTATTCGATCTTTTATCATTACTCCGATTTACCTA
195 CCTACAA-TTATTCGATCTTTTATCATTACTCCGATTTACCTA
117480 TAACTTGACTAAGACATGTTCAC-CAAACTTATCTAATTTAAAACTTAAATTAGAAATTTTTACT
1 TAACTTGACTAAGACATGTTC-CTCAAACTTATCTAATTTAAAACTTAAATTAGAAATTTTTACT
* * * *
117544 TCTAACGAGAATCCTAAA-ATATACTTAAATAATTCTAGTAAAATACATTT-AATTCTTAAAATT
65 CCTAACAAGAACCCTAAAGA-ATACCT-AATAATTCTAGTAAAATAC-TTTCAATTCTTAAAATT
* *
117607 AATTCTATTTTAGAATCCTAAAAAAAACCCT-AAAAGTTACTCATGAATTAAGAGAAATATTAAA
127 AATTCTATTTTAGAATCCT--AAAAAACCCTAAAAAATTACTAATGAATTAAGAGAAATATTAAA
* * *
117671 ATTCATCTGCAATTATTTGATCTTTTATCA
190 ATTCACCTACAATTATTCGATCTTTTATCA
117701 ATATTATGAT
Statistics
Matches: 198, Mismatches: 17, Indels: 12
0.87 0.07 0.05
Matches are distributed among these distances:
237 1 0.01
238 94 0.47
239 91 0.46
240 3 0.02
241 9 0.05
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.37
Consensus pattern (236 bp):
TAACTTGACTAAGACATGTTCCTCAAACTTATCTAATTTAAAACTTAAATTAGAAATTTTTACTC
CTAACAAGAACCCTAAAGAATACCTAATAATTCTAGTAAAATACTTTCAATTCTTAAAATTAATT
CTATTTTAGAATCCTAAAAAACCCTAAAAAATTACTAATGAATTAAGAGAAATATTAAAATTCAC
CTACAATTATTCGATCTTTTATCATTACTCCGATTTACCTA
Found at i:118879 original size:151 final size:147
Alignment explanation
Indices: 118724--119260 Score: 629
Period size: 152 Copynumber: 3.6 Consensus size: 147
118714 TTTTAAAAAA
* * *
118724 AAAAATCAAAAGTTT-TCCTTTGATTAAAACAAAATCACTATTTTACTTCAAAATTAAAACTTTT
1 AAAAATCAAAACTTTCT-CTTT--TTAAAA-AAAATCACTATTTTACTTAAAAATCAAAACTTTT
* *
118788 ATTTTGAAATAGTT-AAAAAAATCAAAACTTTGTTTAAAAATTTAAACTTTTTCTTTTAAAAATA
62 ATTTCGAAATAGTTAAAAAAAATCAAAACTTTATTTAAAAATTTAAACTTTTTC-TTTAAAAATA
118852 ACTAAAAACAGATTTTTATTTTT
126 ACTAAAAA-AGATTTTTATTTTT
* * *
118875 AAAAAT-ATAAAATTTCTTTCCTTTTTAATAAAAATCACTACTTTACTTAAAAATCAAAACTTTT
1 AAAAATCA-AAACTTTC--T-CTTTTTAAAAAAAATCACTATTTTACTTAAAAATCAAAACTTTT
*
118939 ATTTCGAAATAGTTAAAAAAAATCAAAACTTTATTTAAAAATTTAAACTTTTTCTTCAAAAATAA
62 ATTTCGAAATAGTTAAAAAAAATCAAAACTTTATTTAAAAATTTAAACTTTTTCTTTAAAAATAA
119004 CTAAAAAATAGATTTTTATTTTT
127 CT-AAAAA-AGATTTTTATTTTT
** * *
119027 AAAAAT-ATAAACTTTCTCTTTTTTAATGAAAATCACTATTTT-CTTAAAAATCTAAATTTTTAT
1 AAAAATCA-AAACTTTCTC-TTTTTAAAAAAAATCACTATTTTACTTAAAAATCAAAACTTTTAT
119090 TTCGAAATAGTTAAAAAAAATCAAAACTTTATTTAAAAATTTAAAC-TTTTC--TAAAAA-AA-T
64 TTCGAAATAGTTAAAAAAAATCAAAACTTTATTTAAAAATTTAAACTTTTTCTTTAAAAATAACT
*
119150 -----AGATTTTAATTTTT
129 AAAAAAGATTTTTATTTTT
* *
119164 AAAAACTC-AAACTTTCTCTTTTTAAAAAAAAATTACTATTTTACTTAAAAATCAAAGCTTTTAT
1 AAAAA-TCAAAACTTTCTCTTTTT-AAAAAAAATCACTATTTTACTTAAAAATCAAAACTTTTAT
* *
119228 TTTGAAATTGTTTAAAAAAAAAATCAAAACTTT
64 TTCGAAATAG-TT--AAAAAAAATCAAAACTTT
119261 TCCCAAATTC
Statistics
Matches: 348, Mismatches: 24, Indels: 38
0.85 0.06 0.09
Matches are distributed among these distances:
136 5 0.01
137 43 0.12
138 27 0.08
139 2 0.01
141 18 0.05
144 1 0.00
145 2 0.01
146 5 0.01
148 5 0.01
149 66 0.19
150 23 0.07
151 68 0.20
152 77 0.22
154 6 0.02
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.41
Consensus pattern (147 bp):
AAAAATCAAAACTTTCTCTTTTTAAAAAAAATCACTATTTTACTTAAAAATCAAAACTTTTATTT
CGAAATAGTTAAAAAAAATCAAAACTTTATTTAAAAATTTAAACTTTTTCTTTAAAAATAACTAA
AAAAGATTTTTATTTTT
Found at i:118963 original size:52 final size:52
Alignment explanation
Indices: 118899--119139 Score: 155
Period size: 52 Copynumber: 4.8 Consensus size: 52
118889 TCTTTCCTTT
* * *
118899 TTAATAAAAATCACTACTTTACTTAAAAATCAAAACTTTTATTTCGAAATAG
1 TTAAAAAAAATCAATACTTTACTTAAAAATCTAAACTTTTATTTCGAAATAG
* * * * *
118951 TTAAAAAAAATCAAAACTTTATTTAAAAATTTAAACTTTT-TCTTCAAAAATAA
1 TTAAAAAAAATCAATACTTTACTTAAAAATCTAAACTTTTAT-TTC-GAAATAG
* *** * *
119004 CTAAAAAATAGATTTTTA-TTT--TTAAAAATATAAACTTTCTCTTT-----T--
1 TTAAAAAA-A-ATCAATACTTTACTTAAAAATCTAAACTTT-TATTTCGAAATAG
** * * *
119049 TTAATGAAAATCACTA-TTTTCTTAAAAATCTAAATTTTTATTTCGAAATAG
1 TTAAAAAAAATCAATACTTTACTTAAAAATCTAAACTTTTATTTCGAAATAG
* * *
119100 TTAAAAAAAATCAAAACTTTATTTAAAAATTTAAACTTTT
1 TTAAAAAAAATCAATACTTTACTTAAAAATCTAAACTTTT
119140 CTAAAAAAAT
Statistics
Matches: 142, Mismatches: 31, Indels: 32
0.69 0.15 0.16
Matches are distributed among these distances:
43 7 0.05
44 5 0.04
45 20 0.14
47 1 0.01
49 1 0.01
51 13 0.09
52 72 0.51
53 15 0.11
54 5 0.04
55 3 0.02
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.41
Consensus pattern (52 bp):
TTAAAAAAAATCAATACTTTACTTAAAAATCTAAACTTTTATTTCGAAATAG
Found at i:119162 original size:137 final size:140
Alignment explanation
Indices: 119006--119260 Score: 367
Period size: 137 Copynumber: 1.8 Consensus size: 140
118996 AAAAATAACT
* * * **
119006 AAAAAATAGATTTTTATTTTTAAAAA-TATAAACTTTCTCTTTTTTAATGAAAATCACTATTTT-
1 AAAAAATAGATTTTAATTTTTAAAAACT-CAAACTTTCTCTTTTTAAAAAAAAATCACTATTTTA
*
119069 CTTAAAAATCTAAA-TTTTTATTTCGAAATAG-TT-AAAAAAAATCAAAACTTTATTTAAAAATT
65 CTTAAAAATC-AAAGCTTTTATTTCGAAATAGTTTAAAAAAAAATCAAAACTTTATTTAAAAATT
119131 TAAACTTTTCTA
129 TAAACTTTTCTA
*
119143 AAAAAATAGATTTTAATTTTTAAAAACTCAAACTTTCTCTTTTTAAAAAAAAATTACTATTTTAC
1 AAAAAATAGATTTTAATTTTTAAAAACTCAAACTTTCTCTTTTTAAAAAAAAATCACTATTTTAC
* *
119208 TTAAAAATCAAAGCTTTTATTTTGAAATTGTTTAAAAAAAAAATCAAAACTTT
66 TTAAAAATCAAAGCTTTTATTTCGAAATAGTTT-AAAAAAAAATCAAAACTTT
119261 TCCCAAATTC
Statistics
Matches: 103, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
137 58 0.56
138 25 0.24
139 2 0.02
141 18 0.17
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.42
Consensus pattern (140 bp):
AAAAAATAGATTTTAATTTTTAAAAACTCAAACTTTCTCTTTTTAAAAAAAAATCACTATTTTAC
TTAAAAATCAAAGCTTTTATTTCGAAATAGTTTAAAAAAAAATCAAAACTTTATTTAAAAATTTA
AACTTTTCTA
Found at i:119690 original size:10 final size:11
Alignment explanation
Indices: 119675--119743 Score: 59
Period size: 12 Copynumber: 6.0 Consensus size: 11
119665 GAAACCCTAC
119675 AAATAAAA-AA
1 AAATAAAATAA
119685 AAATAAAATAA
1 AAATAAAATAA
*
119696 AAATGATAATAA
1 AAAT-AAAATAA
*
119708 TAATAATAATAA
1 AAATAA-AATAA
*
119720 TAATAATAATAA
1 AAATAA-AATAA
*
119732 TAATAATAATAA
1 AAATAA-AATAA
119744 TAATGATGAT
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
10 8 0.15
11 7 0.13
12 38 0.72
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.26
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:119709 original size:3 final size:3
Alignment explanation
Indices: 119686--119747 Score: 99
Period size: 3 Copynumber: 21.0 Consensus size: 3
119676 AATAAAAAAA
* *
119686 AAT AA- AAT AAA AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
119733 AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT
119748 GATGATGATG
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
2 2 0.04
3 52 0.96
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:119752 original size:3 final size:3
Alignment explanation
Indices: 119746--119771 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
119736 AATAATAATA
119746 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
119772 AATTTGGGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:121502 original size:27 final size:25
Alignment explanation
Indices: 121456--121505 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 25
121446 TAACTTTCTT
*
121456 AAAATTTTTTTATTTTTTTAAAATA
1 AAAATTTTTTTAGTTTTTTAAAATA
121481 AAAATTTTTATTTAGTTTTTTAAAA
1 AAAA-TTTT-TTTAGTTTTTTAAAA
121506 AATTTAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.18
26 4 0.18
27 14 0.64
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
AAAATTTTTTTAGTTTTTTAAAATA
Found at i:122200 original size:11 final size:11
Alignment explanation
Indices: 122184--122213 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
122174 TTTAATATAT
122184 TAATTAAGTGA
1 TAATTAAGTGA
122195 TAATTAAGTGA
1 TAATTAAGTGA
122206 TAATTAAG
1 TAATTAAG
122214 ATGCTTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.37
Consensus pattern (11 bp):
TAATTAAGTGA
Found at i:125308 original size:31 final size:31
Alignment explanation
Indices: 125270--125350 Score: 108
Period size: 31 Copynumber: 2.6 Consensus size: 31
125260 TTCGGTCACT
* * *
125270 AAAGTTTTCATTGAAGTCACTGAACAATTCA
1 AAAGTTTTTATTTAAGTCACTGAACAATCCA
* *
125301 AAAGTTTTTATTTAAGTCACTGAGCTATCCA
1 AAAGTTTTTATTTAAGTCACTGAACAATCCA
*
125332 GAAGTTTTTATTTAAGTCA
1 AAAGTTTTTATTTAAGTCA
125351 TTGGGTTGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (31 bp):
AAAGTTTTTATTTAAGTCACTGAACAATCCA
Found at i:127154 original size:29 final size:29
Alignment explanation
Indices: 127112--127216 Score: 115
Period size: 29 Copynumber: 3.5 Consensus size: 29
127102 ATTTAATAAA
*
127112 TTTAGGTACCAAATTGAATCTAAAAAAAG
1 TTTAGGTACCAAATTGAATCAAAAAAAAG
127141 TTTAGGTACCAAATTAGAA--AAAAAATGCCAAG
1 TTTAGGTACCAAATT-GAATCAAAAAA----AAG
* * *
127173 TTCAGGTACCAAATTGGATCCAAAAAAAG
1 TTTAGGTACCAAATTGAATCAAAAAAAAG
127202 TTTAGGTACCAAATT
1 TTTAGGTACCAAATT
127217 AGGAAAAAGT
Statistics
Matches: 64, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
28 5 0.08
29 32 0.50
30 3 0.05
31 2 0.03
32 17 0.27
33 5 0.08
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (29 bp):
TTTAGGTACCAAATTGAATCAAAAAAAAG
Found at i:127210 original size:61 final size:60
Alignment explanation
Indices: 127115--127305 Score: 221
Period size: 59 Copynumber: 3.2 Consensus size: 60
127105 TAATAAATTT
* * *
127115 AGGTACCAAATTGAATCTAAAAAAAGTTTAGGTACCAAATTAGAAAAAAAATGCCAAGTTC
1 AGGTACCAAATTGGATC-AAAAAAAGTTTAGGTACCAAATTAGAGAAAAAATGTCAAGTTC
* *
127176 AGGTACCAAATTGGATCCAAAAAAAGTTTAGGTACCAAATTAG-GAAAAAGTGTCAAGTTT
1 AGGTACCAAATTGGAT-CAAAAAAAGTTTAGGTACCAAATTAGAGAAAAAATGTCAAGTTC
* * * *
127236 AGATATCAAATT-GAGT-AAAAAATTGTTTAAGTACCAAATTA-AGAAAAAATGTCAAGTTC
1 AGGTACCAAATTGGA-TCAAAAAA-AGTTTAGGTACCAAATTAGAGAAAAAATGTCAAGTTC
127295 -GAGTACCAAAT
1 AG-GTACCAAAT
127306 ATTATATTAA
Statistics
Matches: 112, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
58 7 0.06
59 40 0.36
60 24 0.21
61 40 0.36
62 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.25
Consensus pattern (60 bp):
AGGTACCAAATTGGATCAAAAAAAGTTTAGGTACCAAATTAGAGAAAAAATGTCAAGTTC
Found at i:127246 original size:60 final size:59
Alignment explanation
Indices: 127112--127293 Score: 215
Period size: 61 Copynumber: 3.0 Consensus size: 59
127102 ATTTAATAAA
* * *
127112 TTTAGGTACCAAATTGAATCTAAAAAAAGTTTAGGTACCAAATTAGAAAAAAAATGCCAAG
1 TTTAGGTACCAAATTGGATC-AAAAAAAGTTTAGGTACCAAATTAG-GAAAAAATGTCAAG
* *
127173 TTCAGGTACCAAATTGGATCCAAAAAAAGTTTAGGTACCAAATTAGGAAAAAGTGTCAAG
1 TTTAGGTACCAAATTGGAT-CAAAAAAAGTTTAGGTACCAAATTAGGAAAAAATGTCAAG
* * * * *
127233 TTTAGATATCAAATT-GAGT-AAAAAATTGTTTAAGTACCAAATTAAGAAAAAATGTCAAG
1 TTTAGGTACCAAATTGGA-TCAAAAAA-AGTTTAGGTACCAAATTAGGAAAAAATGTCAAG
127292 TT
1 TT
127294 CGAGTACCAA
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
58 6 0.06
59 33 0.31
60 24 0.23
61 42 0.40
62 1 0.01
ACGTcount: A:0.47, C:0.10, G:0.16, T:0.27
Consensus pattern (59 bp):
TTTAGGTACCAAATTGGATCAAAAAAAGTTTAGGTACCAAATTAGGAAAAAATGTCAAG
Found at i:127303 original size:31 final size:30
Alignment explanation
Indices: 127207--127305 Score: 80
Period size: 31 Copynumber: 3.3 Consensus size: 30
127197 AAAAGTTTAG
* * *
127207 GTACCAAATTAGGAAAAAGTGTCAAGTTTA
1 GTACCAAATTAAGAAAAAATGTCAAGTTAA
* *
127237 GATATCAAATTGAGTAAAAAAT-T---GTTTAA
1 G-TACCAAATTAAG-AAAAAATGTCAAG-TTAA
*
127266 GTACCAAATTAAGAAAAAATGTCAAGTTCGA
1 GTACCAAATTAAGAAAAAATGTCAAGTT-AA
127297 GTACCAAAT
1 GTACCAAAT
127306 ATTATATTAA
Statistics
Matches: 53, Mismatches: 8, Indels: 15
0.70 0.11 0.20
Matches are distributed among these distances:
27 7 0.13
28 12 0.23
29 4 0.08
30 3 0.06
31 21 0.40
32 6 0.11
ACGTcount: A:0.46, C:0.10, G:0.16, T:0.27
Consensus pattern (30 bp):
GTACCAAATTAAGAAAAAATGTCAAGTTAA
Found at i:127354 original size:2 final size:2
Alignment explanation
Indices: 127347--127383 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
127337 TTTATTTTAA
127347 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
127384 AGTTATGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:128991 original size:21 final size:20
Alignment explanation
Indices: 128956--128998 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
128946 AAAAATATAT
128956 TTATTTTACAAAATAATTTGTA
1 TTATTTTACAAAAT-ATTT-TA
*
128978 TTATTTT-GAAAATATTTTA
1 TTATTTTACAAAATATTTTA
128997 TT
1 TT
128999 GAATTCATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 4 0.20
21 5 0.25
22 7 0.35
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (20 bp):
TTATTTTACAAAATATTTTA
Found at i:130529 original size:21 final size:21
Alignment explanation
Indices: 130482--130537 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
130472 AATAGTGCAG
*
130482 ACTTCTACAGATACAAGTGAC
1 ACTTCTACCGATACAAGTGAC
* *
130503 AGTTCTACCGATACAAGT-ATT
1 ACTTCTACCGATACAAGTGA-C
*
130524 ACTTCTACCAATAC
1 ACTTCTACCGATAC
130538 TAAAAACTCC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 1 0.03
21 28 0.97
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.29
Consensus pattern (21 bp):
ACTTCTACCGATACAAGTGAC
Found at i:131338 original size:53 final size:53
Alignment explanation
Indices: 131208--131401 Score: 228
Period size: 53 Copynumber: 3.7 Consensus size: 53
131198 ATTCACATTT
* **
131208 AATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATAGGATTTG
1 AATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATTGGATTCA
* * * * * * *
131261 TATGACTTATGAAGACACAAAGTCATCGGACCTTTAATCCATAATTGGATTCA
1 AATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATTGGATTCA
* * *
131314 AATAACTCACGATGATACAGAGTCATCGGACCTTTAGTCCGT-GTTAGGATTCA
1 AATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATT-GGATTCA
* * *
131367 TATAACTCACGATGACCCAGAGTCATCGAACCTTT
1 AATAACTCACGATGACACAGAGTCATCGGACCTTT
131402 TTGCATTTAC
Statistics
Matches: 116, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
52 2 0.02
53 114 0.98
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (53 bp):
AATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATTGGATTCA
Found at i:131393 original size:106 final size:106
Alignment explanation
Indices: 131208--131401 Score: 271
Period size: 106 Copynumber: 1.8 Consensus size: 106
131198 ATTCACATTT
** * * *
131208 AATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATAGGATTTGTATGACTTATGA
1 AATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATAGGATTCATATAACTCACGA
*
131273 AGACACAAAGTCATCGGACCTTTAATCCATAATTGGATTCA
66 AGACACAAAGTCATCGAACCTTTAATCCATAATTGGATTCA
* * **
131314 AATAACTCACGATGATACAGAGTCATCGGACCTTTAGTCCGTGTTAGGATTCATATAACTCACGA
1 AATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATAGGATTCATATAACTCACGA
* * *
131379 TGACCCAGAGTCATCGAACCTTT
66 AGACACAAAGTCATCGAACCTTT
131402 TTGCATTTAC
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
106 75 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (106 bp):
AATAACTCACGATGACACAGAGTCATCGGACCTTTAATCCGTAATAGGATTCATATAACTCACGA
AGACACAAAGTCATCGAACCTTTAATCCATAATTGGATTCA
Found at i:132339 original size:17 final size:17
Alignment explanation
Indices: 132319--132353 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
132309 CTCATGCATA
132319 TATTTGGTTAATTTATT
1 TATTTGGTTAATTTATT
132336 TATTTGGTTAATTTATT
1 TATTTGGTTAATTTATT
132353 T
1 T
132354 TATCATACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (17 bp):
TATTTGGTTAATTTATT
Found at i:133247 original size:112 final size:112
Alignment explanation
Indices: 133050--133385 Score: 584
Period size: 112 Copynumber: 3.0 Consensus size: 112
133040 TCTTTGAATA
** *
133050 TACCGTAAAATCCACTTGTTTTCTTAAGATAAGATATGTTGAATTCACCTAATCAAGATTGATAT
1 TACCGTAAAATCCACAAGTTTTCTTGAGATAAGATATGTTGAATTCACCTAATCAAGATTGATAT
133115 CGAACTAGTGTTTGGTGTGAAATTACTCCCAAAATGGAATTATATAT
66 CGAACTAGTGTTTGGTGTGAAATTACTCCCAAAATGGAATTATATAT
133162 TACCGTAAAATCCACAAGTTTTCTTGAGATAAGATATGTTGAATTCACCTAATCAAGATTGATAT
1 TACCGTAAAATCCACAAGTTTTCTTGAGATAAGATATGTTGAATTCACCTAATCAAGATTGATAT
133227 CGAACTAGTGTTTGGTGTGAAATTACTCCCAAAATGGAATTATATAT
66 CGAACTAGTGTTTGGTGTGAAATTACTCCCAAAATGGAATTATATAT
**
133274 TACCGTAAAATCCACTAA-TTTTCTTGAGATAAGATATGTTGAATTCACCTAATCAAGGCTGATA
1 TACCGTAAAATCCAC-AAGTTTTCTTGAGATAAGATATGTTGAATTCACCTAATCAAGATTGATA
* **
133338 TCAAACTAGTGTTTGGTGTGAAATTACTCAAAAAATGGAATTATATAT
65 TCGAACTAGTGTTTGGTGTGAAATTACTCCCAAAATGGAATTATATAT
133386 GATTCTTTTG
Statistics
Matches: 215, Mismatches: 8, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
112 213 0.99
113 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (112 bp):
TACCGTAAAATCCACAAGTTTTCTTGAGATAAGATATGTTGAATTCACCTAATCAAGATTGATAT
CGAACTAGTGTTTGGTGTGAAATTACTCCCAAAATGGAATTATATAT
Found at i:134359 original size:23 final size:22
Alignment explanation
Indices: 134319--134370 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
134309 CTCGTTCAGT
* *
134319 TCATTTAATCCTTGTTTAATAAA
1 TCATTTAAACCTTATTTAA-AAA
* *
134342 TCATTTAAAGCTTATTTAAAAT
1 TCATTTAAACCTTATTTAAAAA
134364 TCATTTA
1 TCATTTA
134371 TTATTTTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 9 0.36
23 16 0.64
ACGTcount: A:0.37, C:0.12, G:0.04, T:0.48
Consensus pattern (22 bp):
TCATTTAAACCTTATTTAAAAA
Found at i:136075 original size:157 final size:152
Alignment explanation
Indices: 135768--136077 Score: 512
Period size: 157 Copynumber: 2.0 Consensus size: 152
135758 CACACCAGTA
* *
135768 TATTTTTAAAAAAATTATGAATTACGATCTAAATATATAAACGTTTTAGAAATTAAAAAAAATAA
1 TATTTTAAAAAAAATTATGAATTACGATATAAATATATAAACGTTTTAGAAATTAAAAAAAATAA
135833 ATACATGCCAACAAAAAGCATGGATAGGTGAAAAAGTGAGAGATAAGAGGGAGTTGAAATGTGAA
66 ATACATGCCAACAAAAAGCATGGATAGGTGAAAAAGTGAGAGATAAGAGGGAGTTGAAATGTGAA
*
135898 AAGAAAATGAACTTTGAATGTG
131 AAGAAAATGAACTTTAAATGTG
*
135920 TATTTTAAAAAAAATTTGTGAATTACGATATAAATATATAAACGTTTTAGAAATTTAAAAAAAAA
1 TATTTTAAAAAAAA-TTATGAATTACGATATAAATATATAAACGTTTTAGAAA-TT--AAAAAAA
* * *
135985 ATAAATACATGCTAACAAAAAGCATGGATAGGTGACAAAGTGAAGAGATTAGAGGGAGTTGAAAT
62 ATAAATACATGCCAACAAAAAGCATGGATAGGTGAAAAAGTG-AGAGATAAGAGGGAGTTGAAAT
136050 GTGAAAAGAAAATGAACTTTAAATGTG
126 GTGAAAAGAAAATGAACTTTAAATGTG
136077 T
1 T
136078 TTAGTTGGGA
Statistics
Matches: 146, Mismatches: 7, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
152 13 0.09
153 36 0.25
154 2 0.01
156 47 0.32
157 48 0.33
ACGTcount: A:0.49, C:0.05, G:0.18, T:0.27
Consensus pattern (152 bp):
TATTTTAAAAAAAATTATGAATTACGATATAAATATATAAACGTTTTAGAAATTAAAAAAAATAA
ATACATGCCAACAAAAAGCATGGATAGGTGAAAAAGTGAGAGATAAGAGGGAGTTGAAATGTGAA
AAGAAAATGAACTTTAAATGTG
Done.