genome.fa.s15195.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015195.1 Kokia drynarioides strain JFW-HI SEQ_130239, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163993

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2407--2477	17	3.9	17	72	16	63	78	2	14	4	1.01
3491--3536	25	1.9	23	86	8	65	34	4	6	54	1.46
4751--4782	6	5.3	6	92	0	55	12	0	3	84	0.74
6502--6535	16	2.1	16	88	0	50	44	0	2	52	1.16
18652--18682	16	1.9	16	93	0	53	38	6	41	12	1.69
22240--22269	15	2.0	15	93	0	51	50	0	13	36	1.42
25526--25570	19	2.4	19	81	7	56	37	0	4	57	1.19
26340--26372	16	2.0	17	94	5	59	15	12	0	72	1.12
28950--28975	12	2.2	12	100	0	52	34	0	15	50	1.45
29163--29198	6	5.8	6	87	6	54	16	2	0	80	0.83
30693--30737	19	2.4	19	81	7	56	35	0	6	57	1.25
31498--31552	22	2.4	21	77	14	56	14	12	3	69	1.33
32103--32174	29	2.5	29	88	0	108	43	19	8	29	1.80
32289--32349	22	2.8	20	74	13	59	63	0	0	36	0.94
41826--41856	15	2.0	16	93	6	55	29	0	0	70	0.87
46031--46075	14	3.0	15	77	9	56	28	2	15	53	1.54
46032--46088	30	1.9	30	85	0	78	35	1	12	50	1.50
47623--48338	60	12.0	59	74	13	508	27	18	18	36	1.94
47623--48338	62	12.0	62	75	14	388	27	18	18	36	1.94
47615--48314	118	5.9	114	81	9	632	26	19	18	36	1.94
57487--57622	45	3.0	45	95	0	245	32	13	4	49	1.63
62880--62939	28	2.2	27	82	5	75	35	0	6	58	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64683--64738	25	2.2	26	83	3	69	35	3	1	58	1.26
67412--67551	43	3.3	43	86	0	190	27	32	19	20	1.97
70156--70290	41	3.3	41	81	1	146	22	28	16	31	1.96
74097--74130	17	2.0	17	88	0	50	52	0	0	47	1.00
78146--78207	26	2.4	26	83	2	81	43	11	12	32	1.79
79098--79140	14	3.2	13	87	9	59	18	6	2	72	1.19
79604--79836	116	2.0	116	100	0	466	39	6	11	43	1.65
80062--80136	37	2.1	36	82	12	91	37	4	1	57	1.26
80072--80162	34	2.6	33	77	17	87	35	3	0	61	1.12
81528--81624	48	2.0	48	100	0	194	58	12	4	24	1.51
85237--85304	6	11.8	6	84	9	70	33	51	0	14	1.43
85246--85304	9	6.6	9	82	0	64	33	54	0	11	1.37
85249--85298	21	2.4	21	93	0	82	34	56	0	10	1.33
85243--85298	27	2.1	27	96	0	103	33	53	0	12	1.39
85252--85301	3	16.7	3	82	0	64	34	58	0	8	1.28
85288--85333	24	1.9	24	100	0	92	43	43	6	6	1.56
88729--88768	2	20.0	2	94	0	71	47	0	2	50	1.14
101279--101423	52	2.8	52	90	1	227	31	22	17	28	1.96
102275--102318	20	2.1	21	83	4	54	36	13	2	47	1.56
103257--103292	18	2.0	18	100	0	72	50	22	0	27	1.50
106133--106167	17	2.1	17	100	0	70	37	11	17	34	1.85
113630--113656	6	4.5	6	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116118--116169	4	12.5	4	84	8	59	69	0	30	0	0.89
116119--116183	21	3.1	21	86	6	62	64	0	35	0	0.94
116118--116169	25	2.1	25	85	0	68	69	0	30	0	0.89
116121--116183	20	3.2	20	87	10	87	63	0	36	0	0.95
130277--130302	5	5.2	5	100	0	52	19	19	19	42	1.90
132492--132532	21	2.0	21	85	9	57	51	7	4	36	1.51
139617--139666	20	2.5	20	87	3	75	38	14	8	40	1.75
144225--144255	16	1.9	16	93	0	53	38	0	6	54	1.26
144786--144835	26	1.9	25	84	15	66	44	6	0	50	1.26
145491--145532	3	14.0	3	100	0	84	33	0	0	66	0.92
146872--146903	12	2.7	12	95	0	55	43	25	6	25	1.77
150212--150255	23	1.9	23	90	0	70	36	0	2	61	1.09
156679--156729	14	3.6	14	78	10	50	35	1	0	62	1.06
162725--162801	34	2.3	34	84	6	102	41	1	3	53	1.27
162725--162801	17	4.5	17	81	12	86	41	1	3	53	1.27

Tables:   1

The End!