genome.fa.s15197.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015197.1 Kokia drynarioides strain JFW-HI SEQ_130241, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  258806

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576--611	4	8.8	4	87	6	54	0	30	0	69	0.89
579--611	17	1.9	17	100	0	66	0	30	0	69	0.88
6371--6401	15	2.1	15	93	0	53	41	0	12	45	1.42
23706--23753	23	2.2	21	81	7	51	45	0	2	52	1.12
24817--24860	23	1.9	23	86	9	63	25	6	0	68	1.14
27485--27591	53	2.1	51	82	7	126	31	16	28	23	1.96
27593--27716	59	2.2	56	86	4	167	33	15	23	28	1.95
32770--32999	58	3.9	58	80	9	243	31	2	30	36	1.70
32794--32990	29	6.7	30	79	11	187	30	1	32	35	1.67
32770--32999	30	7.8	29	79	10	211	31	2	30	36	1.70
34132--34177	16	2.8	17	75	18	53	34	2	2	60	1.21
34825--34870	23	2.0	22	91	4	74	52	0	2	45	1.13
34842--34900	17	3.5	17	83	0	82	50	1	0	47	1.11
50316--50973	88	7.5	88	79	7	656	22	18	25	33	1.97
50316--50977	177	3.8	176	82	4	717	22	18	25	33	1.97
54283--54319	6	6.2	6	90	0	56	0	18	2	78	0.87
67261--67305	17	2.6	17	85	3	54	44	2	0	53	1.13
68805--68848	22	2.0	22	95	0	79	47	4	11	36	1.60
69499--69561	31	2.0	31	88	11	94	46	9	9	34	1.69
74952--74988	14	2.8	13	87	4	56	56	2	0	40	1.13
79001--79040	3	13.3	3	94	0	71	0	32	32	35	1.58
79113--79217	51	2.1	51	100	0	210	11	22	29	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79570--79627	30	1.9	30	82	0	71	13	15	43	27	1.85
88829--88858	2	15.0	2	100	0	60	50	0	0	50	1.00
93772--93805	4	8.5	4	86	0	50	47	20	2	29	1.65
98924--98949	3	8.7	3	100	0	52	30	0	0	69	0.89
101054--101659	299	2.0	299	100	0	1212	35	20	11	33	1.88
111282--111326	22	2.0	22	87	8	65	37	0	0	62	0.96
117047--117073	2	13.5	2	100	0	54	0	48	0	51	1.00
128748--128959	108	2.0	108	98	0	406	39	15	17	27	1.90
133879--133980	48	2.1	49	85	8	147	50	0	4	44	1.30
139727--139763	6	6.2	6	96	0	56	51	10	0	37	1.37
149619--149646	5	5.6	5	100	0	56	17	0	42	39	1.50
154548--154590	20	2.2	20	91	0	68	34	9	0	55	1.32
163573--163686	29	3.9	29	76	0	120	42	17	13	26	1.86
163774--163924	40	3.8	40	93	0	230	25	15	21	37	1.93
165555--165638	41	2.0	41	90	0	132	44	26	5	23	1.76
165581--165673	41	2.3	41	80	9	93	43	27	3	25	1.70
165693--165744	21	2.5	21	76	14	54	26	15	21	36	1.93
169624--169667	14	3.1	14	77	9	54	65	2	0	31	1.05
171068--171139	29	2.4	29	84	6	83	20	19	19	40	1.92
172685--173139	234	1.9	234	94	0	802	24	9	24	40	1.85
175994--176033	20	2.0	20	100	0	80	30	10	10	50	1.69
178305--178348	17	2.5	17	85	3	52	36	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179276--179317	21	2.1	21	86	8	61	42	16	4	35	1.69
198287--198333	17	2.8	17	96	3	87	76	0	0	23	0.78
198476--198558	42	2.0	43	92	2	141	59	4	3	32	1.36
200792--200819	14	2.0	14	100	0	56	28	28	21	21	1.99
201102--201144	2	22.0	2	88	4	61	51	0	0	48	1.00
201106--201149	21	2.1	21	95	0	79	50	0	0	50	1.00
222589--223071	61	8.1	59	77	12	425	26	15	15	41	1.87
222588--223042	118	3.8	120	80	9	498	26	14	15	42	1.86
226852--226886	17	2.1	16	89	5	52	54	0	8	37	1.31
226964--227016	12	4.7	11	81	9	63	56	1	1	39	1.21
226998--227671	95	7.0	95	80	12	778	45	5	4	44	1.48
227156--227198	21	2.0	21	90	0	68	32	9	9	48	1.67
227299--227353	16	3.2	17	75	12	51	52	3	0	43	1.18
228574--228614	18	2.3	18	100	0	82	21	34	34	9	1.87
229051--229170	30	4.1	30	84	4	154	28	6	4	60	1.40
230046--230182	57	2.3	56	81	9	150	45	10	11	32	1.76
230046--230740	118	5.9	118	77	7	623	42	13	15	28	1.85
230103--230418	61	5.3	60	69	15	151	44	12	13	29	1.80
230046--230714	235	2.9	235	78	6	719	42	13	14	29	1.84
230230--230667	120	3.7	116	76	7	344	43	13	15	27	1.84
230088--230760	57	11.6	56	72	14	352	42	14	14	28	1.84
230571--230762	54	3.5	54	83	8	219	38	15	16	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230675--230804	54	2.4	54	80	5	145	34	16	15	33	1.90

Tables:   1

The End!